Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung02300 Brassica carinata HOM05D005879 ORTHO05D007432 6.4e-83 310.8 174 100.0
BolC7t46692H Brassica oleracea HOM05D005879 ORTHO05D007432 6.1e-57 224.6 171 83.6
A03p65800 Brassica napus HOM05D005879 ORTHO05D007432 3.0e-56 222.2 169 82.8
BraA03t15633Z Brassica rapa HOM05D005879 ORTHO05D007432 3.0e-56 222.2 169 82.8
C07p62780 Brassica napus HOM05D005879 ORTHO05D007432 4.4e-55 218.4 171 81.9
C03p78540 Brassica napus HOM05D005879 ORTHO05D007432 8.2e-46 187.6 169 72.2
Carub.0007s0187 Capsella rubella HOM05D005879 ORTHO05D007432 5.3e-45 184.9 174 67.2
AL7G12180 Arabidopsis lyrata HOM05D005879 ORTHO05D007432 1.2e-44 183.7 171 67.8
CARHR246770 Cardamine hirsuta HOM05D005879 ORTHO05D007432 1.6e-44 183.3 172 65.7
Sp7g35960 Schrenkiella parvula HOM05D005879 ORTHO05D007432 1.6e-44 183.3 178 68.5
THA.LOC104807688 Tarenaya hassleriana HOM05D005879 ORTHO05D007432 3.8e-43 178.7 170 67.1
Thhalv10025595m.g Eutrema salsugineum HOM05D005879 ORTHO05D007432 8.5e-43 177.6 154 71.4
Aa31LG6G15340 Aethionema arabicum HOM05D005879 ORTHO05D007432 1.9e-42 176.4 169 65.7
AT4G39920 Arabidopsis thaliana HOM05D005879 ORTHO05D007432 1.2e-39 167.2 154 66.9
BolC3t20106H Brassica oleracea HOM05D005879 ORTHO05D007432 6.3e-38 161.4 132 77.3
Cpa.g.sc615.1 Carica papaya HOM05D005879 ORTHO05D007432 2.5e-34 149.4 147 64.6
TWI77G0137 Tripterygium wilfordii HOM05D005879 ORTHO05D007432 4.0e-32 142.1 138 60.9
TWI81G0999 Tripterygium wilfordii HOM05D005879 ORTHO05D007432 3.4e-31 139.0 143 59.4
Manes.12G134100 Manihot esculenta HOM05D005879 ORTHO05D007432 1.7e-30 136.7 180 53.9
Gohir.A11G202400 Gossypium hirsutum HOM05D005879 ORTHO05D007432 2.2e-30 136.3 140 60.7
Cfa017077 Carpinus fangiana HOM05D005879 ORTHO05D007432 3.7e-30 135.6 159 54.7
Eucgr.B03900 Eucalyptus grandis HOM05D005879 ORTHO05D007432 2.4e-29 132.9 156 58.3
MD05G1043000 Malus domestica HOM05D005879 ORTHO05D007432 2.4e-29 132.9 146 58.9
Gorai.007G237000 Gossypium raimondii HOM05D005879 ORTHO05D007432 4.1e-29 132.1 153 57.5
Lj4g0026645 Lotus japonicus HOM05D005879 ORTHO05D007432 1.2e-28 130.6 168 50.6
Prupe.6G188100 Prunus persica HOM05D005879 ORTHO05D007432 1.6e-28 130.2 167 53.3
Gohir.D11G220800 Gossypium hirsutum HOM05D005879 ORTHO05D007432 2.0e-28 129.8 153 56.9
RcHm_v2.0_Chr2g0113151 Rosa chinensis HOM05D005879 ORTHO05D007432 2.7e-28 129.4 166 50.0
Dinv21896 Davidia involucrata HOM05D005879 ORTHO05D007432 3.5e-28 129.0 153 54.2
Haze_24910 Corylus avellana HOM05D005879 ORTHO05D007432 4.5e-28 128.6 137 56.2
Haze_24914 Corylus avellana HOM05D005879 ORTHO05D007432 4.5e-28 128.6 137 56.2
COL.COLO4_27255 Corchorus olitorius HOM05D005879 ORTHO05D007432 1.3e-27 127.1 125 61.6
Potri.005G074700 Populus trichocarpa HOM05D005879 ORTHO05D007432 5.0e-27 125.2 131 59.5
TPR.G6200 Trifolium pratense HOM05D005879 ORTHO05D007432 5.0e-27 125.2 167 49.7
Ca_17743_v3 Cicer arietinum L. HOM05D005879 ORTHO05D007432 2.5e-26 122.9 142 57.0
FAN26G1261 Fragaria x ananassa HOM05D005879 ORTHO05D007432 3.3e-26 122.5 165 50.3
Sabra05G0061500 Salix brachista HOM05D005879 ORTHO05D007432 3.3e-26 122.5 149 53.7
ClCG07G017360 Citrullus lanatus HOM05D005879 ORTHO05D007432 4.2e-26 122.1 167 49.7
CsaV3_4G004590 Cucumis sativus L. HOM05D005879 ORTHO05D007432 5.5e-26 121.7 148 52.7
CsaV3_UNG120970 Cucumis sativus L. HOM05D005879 ORTHO05D007432 5.5e-26 121.7 148 52.7
CsaV3_UNG160200 Cucumis sativus L. HOM05D005879 ORTHO05D007432 5.5e-26 121.7 148 52.7
CsaV3_UNG223580 Cucumis sativus L. HOM05D005879 ORTHO05D007432 5.5e-26 121.7 148 52.7
MELO3C017607.2 Cucumis melo HOM05D005879 ORTHO05D007432 7.2e-26 121.3 148 52.7
PSO170G2230 Papaver somniferum HOM05D005879 ORTHO05D007432 7.2e-26 121.3 144 52.8
Lalb_Chr06g0163471 Lupinus albus HOM05D005879 ORTHO05D007432 9.5e-26 120.9 168 52.4
BcaC01g00330 Brassica carinata HOM05D005879 ORTHO05D007432 1.2e-25 120.6 131 65.6
GSVIVG01004856001 Vitis vinifera HOM05D005879 ORTHO05D007432 1.6e-25 120.2 134 58.2
FvH4_1g20700 Fragaria vesca HOM05D005879 ORTHO05D007432 2.8e-25 119.4 163 49.7
arahy.Tifrunner.gnm1.ann1.Y76I0L Arachis hypogaea HOM05D005879 ORTHO05D007432 3.6e-25 119.0 166 48.8
arahy.Tifrunner.gnm1.ann1.F9QSZL Arachis hypogaea HOM05D005879 ORTHO05D007432 6.1e-25 118.2 149 51.7
TAR381G0927 Trochodendron aralioides HOM05D005879 ORTHO05D007432 8.0e-25 117.9 157 50.3
QL06p049237 Quercus lobata HOM05D005879 ORTHO05D007432 1.8e-24 116.7 172 48.3
CiPaw.03G142700 Carya illinoinensis HOM05D005879 ORTHO05D007432 2.3e-24 116.3 149 51.0
PSO339G2019 Papaver somniferum HOM05D005879 ORTHO05D007432 2.3e-24 116.3 153 50.3
Ciclev10020973m.g Citrus clementina HOM05D005879 ORTHO05D007432 3.0e-24 115.9 157 51.6
Nn2g14007 Nelumbo nucifera HOM05D005879 ORTHO05D007432 5.2e-24 115.2 141 49.6
Medtr8g090180 Medicago truncatula HOM05D005879 ORTHO05D007432 6.8e-24 114.8 150 52.7
PSO801G0022 Papaver somniferum HOM05D005879 ORTHO05D007432 1.5e-23 113.6 153 49.7
Sed0022481 Sechium edule HOM05D005879 ORTHO05D007432 1.5e-23 113.6 157 48.4
Lsat_1_v5_gn_8_137181 Lactuca sativa HOM05D005879 ORTHO05D007432 3.4e-23 112.5 140 51.4
HanXRQChr17g0554861 Helianthus annuus HOM05D005879 ORTHO05D007432 1.3e-22 110.5 153 45.8
PGSC0003DMG400027189 Solanum tuberosum HOM05D005879 ORTHO05D007432 1.7e-22 110.2 153 47.1
Nitab4.5_0009581g0010 Nicotiana tabacum HOM05D005879 ORTHO05D007432 2.2e-22 109.8 161 46.0
Cc07_g15080 Coffea canephora HOM05D005879 ORTHO05D007432 2.8e-22 109.4 158 46.2
Atru.chr7.1491 Acer truncatum HOM05D005879 ORTHO05D007432 3.7e-22 109.0 157 51.0
Sopen05g031350 Solanum pennellii HOM05D005879 ORTHO05D007432 3.7e-22 109.0 151 47.0
Solyc05g052840.1 Solanum lycopersicum HOM05D005879 ORTHO05D007432 6.3e-22 108.2 149 47.7
VMungo0251G0721 Vigna mungo HOM05D005879 ORTHO05D007432 6.3e-22 108.2 143 52.4
Sc05g0001510 Simmondsia chinensis HOM05D005879 ORTHO05D007432 8.3e-22 107.8 153 49.7
SGA_v2.0_scaffold115G32189 Striga asiatica HOM05D005879 ORTHO05D007432 1.1e-21 107.5 167 46.7
Aqoxy3G00238 Aquilegia oxysepala HOM05D005879 ORTHO05D007432 1.4e-21 107.1 154 48.1
Glyma.08G134800 Glycine max HOM05D005879 ORTHO05D007432 1.4e-21 107.1 163 47.9
SGA_v2.0_scaffold334G49051 Striga asiatica HOM05D005879 ORTHO05D007432 1.4e-21 107.1 167 46.7
Atru.chr7.1487 Acer truncatum HOM05D005879 ORTHO05D007432 2.4e-21 106.3 143 51.0
ECA233G0618 Erigeron canadensis HOM05D005879 ORTHO05D007432 2.4e-21 106.3 145 45.5
Ah.11g050680 Amaranthus hybridus HOM05D005879 ORTHO05D007432 4.1e-21 105.5 167 41.9
EL10Ac5g10569 Beta vulgaris HOM05D005879 ORTHO05D007432 4.1e-21 105.5 137 49.6
Hma1.2p1_0308F.1_g120270 Hydrangea macrophylla HOM05D005879 ORTHO05D007432 5.4e-21 105.1 159 48.4
Rhsim01G0133800 Rhododendron simsii HOM05D005879 ORTHO05D007432 7.0e-21 104.8 131 52.7
RhsimUnG0233600 Rhododendron simsii HOM05D005879 ORTHO05D007432 7.0e-21 104.8 131 52.7
MSTRG.3773 Avicennia marina HOM05D005879 ORTHO05D007432 1.6e-20 103.6 172 47.1
AUR62008049 Chenopodium quinoa HOM05D005879 ORTHO05D007432 1.6e-20 103.6 150 47.3
vmacro12962 Vaccinium macrocarpon HOM05D005879 ORTHO05D007432 2.7e-20 102.8 140 51.4
Oeu032409.1 Olea europaea HOM05D005879 ORTHO05D007432 4.5e-20 102.1 143 49.7
CAN.G151.26 Capsicum annuum HOM05D005879 ORTHO05D007432 7.8e-20 101.3 139 44.6
AUR62028624 Chenopodium quinoa HOM05D005879 ORTHO05D007432 1.3e-19 100.5 174 43.1
Migut.L00135 Erythranthe guttata HOM05D005879 ORTHO05D007432 1.7e-19 100.1 157 45.2
Peaxi162Scf00054g00186 Petunia axillaris HOM05D005879 ORTHO05D007432 1.7e-19 100.1 152 46.1
DCAR_003483 Daucus carota HOM05D005879 ORTHO05D007432 2.3e-19 99.8 144 45.8
unitig_32.g10701 Utricularia gibba HOM05D005879 ORTHO05D007432 3.8e-19 99.0 145 47.6
arahy.Tifrunner.gnm1.ann1.DH96WI Arachis hypogaea HOM05D005879 ORTHO05D007432 6.6e-19 98.2 141 46.8
MBI05_g37046_MAGBIO Magnolia biondii HOM05D005879 ORTHO05D007432 1.1e-18 97.4 140 48.6
SalBow7G4497 Salvia bowleyana HOM05D005879 ORTHO05D007432 7.3e-18 94.7 152 46.1
ATR0584G053 Amborella trichopoda HOM05D005879 ORTHO05D007432 9.5e-18 94.4 150 40.7
Duzib147G1529 Durio zibethinus HOM05D005879 ORTHO05D007432 3.6e-17 92.4 80 61.2
Thecc.01G100600 Theobroma cacao HOM05D005879 ORTHO05D007432 3.6e-17 92.4 104 55.8
Phvul.002G256800 Phaseolus vulgaris HOM05D005879 ORTHO05D007432 2.3e-16 89.7 143 46.2
BcaB03g12293 Brassica carinata HOM05D005879 ORTHO05D007432 1.2e-15 87.4 67 71.6
vmacro17311 Vaccinium macrocarpon HOM05D005879 ORTHO05D007432 2.2e-14 83.2 90 55.6
Glyma.05G177800 Glycine max HOM05D005879 ORTHO05D007432 3.7e-14 82.4 148 45.9
SEGI_41531 Sequoiadendron giganteum HOM05D005879 ORTHO05D007432 2.4e-13 79.7 143 38.5
HPP92_014012 Vanilla planifolia HOM05D005879 ORTHO05D007432 2.7e-12 76.3 133 43.6
HPP92_013925 Vanilla planifolia HOM05D005879 ORTHO05D007432 7.8e-12 74.7 126 43.7
PGR102G2441 Punica granatum HOM05D005879 ORTHO05D007432 8.6e-11 71.2 157 39.5
Actinidia28237 Actinidia chinensis HOM05D005879 ORTHO05D007432 1.1e-10 70.9 101 50.5
A08p23210 Brassica napus HOM05D005879 ORTHO05D007432 2.5e-10 69.7 134 47.8
Mapoly0002s0046 Marchantia polymorpha HOM05D005879 ORTHO05D007432 5.6e-10 68.6 141 38.3
CDE04G0616 Ceratophyllum demersum HOM05D005879 ORTHO05D007432 1.2e-09 67.4 148 39.9
Zm00001eb243870 Zea mays HOM05D005879 ORTHO05D007432 4.7e-09 65.5 146 34.9
FAN19G0980 Fragaria x ananassa HOM05D005879 ORTHO05D007432 1.4e-08 63.9 127 39.4
Os02g0557000 Oryza sativa ssp. japonica HOM05D005879 ORTHO05D007432 1.8e-08 63.5 148 36.5
SMO143G0283 Selaginella moellendorffii HOM05D005879 ORTHO05D007432 4.4e-07 58.9 148 31.8
Pp3c13_2250 Physcomitrium patens HOM05D005879 ORTHO05D007432 5.8e-07 58.5 168 30.4
Psat7g055120 Pisum sativum HOM05D005879 ORTHO05D007432 7.5e-07 58.2 103 43.7


User provided reference genes

Program Settings