Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung02298 Brassica carinata HOM05D004800 ORTHO05D005842 3.8e-112 408.3 222 100.0
BolC7t44804H Brassica oleracea HOM05D004800 ORTHO05D005842 3.3e-108 395.2 245 90.6
C07p42740 Brassica napus HOM05D004800 ORTHO05D005842 4.8e-107 391.3 245 89.8
A06p35840 Brassica napus HOM05D004800 ORTHO05D005842 1.9e-103 379.4 222 95.5
BraA06t26509Z Brassica rapa HOM05D004800 ORTHO05D005842 1.9e-103 379.4 222 95.5
BcaNung03198 Brassica carinata HOM05D004800 ORTHO05D005842 4.6e-102 374.8 222 94.1
Sp2g22450 Schrenkiella parvula HOM05D004800 ORTHO05D005842 4.8e-91 338.2 218 84.9
BcaNung06718 Brassica carinata HOM05D004800 ORTHO05D005842 1.4e-90 336.7 194 94.3
Thhalv10004902m.g Eutrema salsugineum HOM05D004800 ORTHO05D005842 2.8e-83 312.4 219 79.5
BcaC04g23570 Brassica carinata HOM05D004800 ORTHO05D005842 6.3e-83 311.2 224 80.4
C09p07000 Brassica napus HOM05D004800 ORTHO05D005842 6.3e-83 311.2 224 80.4
AT5G25080 Arabidopsis thaliana HOM05D004800 ORTHO05D005842 1.8e-82 309.7 205 79.5
AL6G36710 Arabidopsis lyrata HOM05D004800 ORTHO05D005842 4.1e-82 308.5 222 75.7
BraA09t36276Z Brassica rapa HOM05D004800 ORTHO05D005842 5.9e-81 304.7 219 79.5
A09p06310 Brassica napus HOM05D004800 ORTHO05D005842 6.5e-80 301.2 219 78.5
Carub.0006s2291 Capsella rubella HOM05D004800 ORTHO05D005842 1.1e-79 300.4 219 75.8
BolC9t53616H Brassica oleracea HOM05D004800 ORTHO05D005842 1.9e-79 299.7 223 78.0
CARHR188420 Cardamine hirsuta HOM05D004800 ORTHO05D005842 1.3e-75 287.0 223 72.6
THA.LOC104814986 Tarenaya hassleriana HOM05D004800 ORTHO05D005842 1.1e-71 273.9 203 69.5
Aa31LG11G4300 Aethionema arabicum HOM05D004800 ORTHO05D005842 1.7e-67 260.0 205 66.8
BcaB04g19808 Brassica carinata HOM05D004800 ORTHO05D005842 1.6e-62 243.4 208 72.1
COL.COLO4_18955 Corchorus olitorius HOM05D004800 ORTHO05D005842 7.7e-57 224.6 215 56.3
Thecc.09G015200 Theobroma cacao HOM05D004800 ORTHO05D005842 8.6e-56 221.1 200 58.5
Duzib168G1619 Durio zibethinus HOM05D004800 ORTHO05D005842 9.5e-55 217.6 216 58.8
Rhsim07G0165700 Rhododendron simsii HOM05D004800 ORTHO05D005842 1.6e-54 216.9 191 61.8
Gorai.009G063300 Gossypium raimondii HOM05D004800 ORTHO05D005842 4.7e-54 215.3 219 55.7
Gohir.A05G060000 Gossypium hirsutum HOM05D004800 ORTHO05D005842 1.0e-53 214.2 216 56.9
Cpa.g.sc148.17 Carica papaya HOM05D004800 ORTHO05D005842 3.0e-53 212.6 201 58.2
Gohir.D05G062200 Gossypium hirsutum HOM05D004800 ORTHO05D005842 3.0e-53 212.6 219 54.8
Dinv13413 Davidia involucrata HOM05D004800 ORTHO05D005842 4.0e-53 212.2 193 60.1
Ciclev10009140m.g Citrus clementina HOM05D004800 ORTHO05D005842 6.8e-53 211.5 198 55.1
vmacro05151 Vaccinium macrocarpon HOM05D004800 ORTHO05D005842 1.2e-52 210.7 195 60.5
Prupe.1G394400 Prunus persica HOM05D004800 ORTHO05D005842 2.6e-52 209.5 193 58.5
MSTRG.25830 Avicennia marina HOM05D004800 ORTHO05D005842 4.4e-52 208.8 215 54.0
TAR625G0162 Trochodendron aralioides HOM05D004800 ORTHO05D005842 4.4e-52 208.8 221 52.9
Lj1g0022737 Lotus japonicus HOM05D004800 ORTHO05D005842 7.5e-52 208.0 204 52.9
SalBow4G3208 Salvia bowleyana HOM05D004800 ORTHO05D005842 9.8e-52 207.6 203 56.2
CSS0020729 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 1.3e-51 207.2 219 54.8
CSS0041988 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 1.3e-51 207.2 219 54.8
Cfa013047 Carpinus fangiana HOM05D004800 ORTHO05D005842 1.7e-51 206.8 215 55.8
Haze_21408 Corylus avellana HOM05D004800 ORTHO05D005842 1.7e-51 206.8 212 56.1
Hma1.2p1_0389F.1_g142470 Hydrangea macrophylla HOM05D004800 ORTHO05D005842 1.7e-51 206.8 220 55.5
TAR625G0311 Trochodendron aralioides HOM05D004800 ORTHO05D005842 2.2e-51 206.5 221 52.5
VMungo1309G1055 Vigna mungo HOM05D004800 ORTHO05D005842 2.2e-51 206.5 200 52.5
TPR.G1887 Trifolium pratense HOM05D004800 ORTHO05D005842 2.9e-51 206.1 201 52.7
FvH4_2g41170 Fragaria vesca HOM05D004800 ORTHO05D005842 4.9e-51 205.3 202 56.9
SGA_v2.0_scaffold147G36341 Striga asiatica HOM05D004800 ORTHO05D005842 4.9e-51 205.3 213 54.5
Dinv08182 Davidia involucrata HOM05D004800 ORTHO05D005842 6.4e-51 204.9 198 57.1
Migut.A00358 Erythranthe guttata HOM05D004800 ORTHO05D005842 1.4e-50 203.8 215 53.0
FAN20G2958 Fragaria x ananassa HOM05D004800 ORTHO05D005842 1.4e-50 203.8 202 56.9
Lj7A735T34 Lonicera japonica HOM05D004800 ORTHO05D005842 1.4e-50 203.8 203 55.7
Oeu001621.3 Olea europaea HOM05D004800 ORTHO05D005842 1.8e-50 203.4 210 52.4
Phvul.009G086600 Phaseolus vulgaris HOM05D004800 ORTHO05D005842 1.8e-50 203.4 200 51.5
FAN27G0477 Fragaria x ananassa HOM05D004800 ORTHO05D005842 4.1e-50 202.2 202 56.4
Psat5g033480 Pisum sativum HOM05D004800 ORTHO05D005842 5.4e-50 201.8 197 52.8
RcHm_v2.0_Chr6g0299361 Rosa chinensis HOM05D004800 ORTHO05D005842 5.4e-50 201.8 204 56.4
Manes.03G008100 Manihot esculenta HOM05D004800 ORTHO05D005842 7.0e-50 201.4 192 55.2
Potri.006G264700 Populus trichocarpa HOM05D004800 ORTHO05D005842 9.2e-50 201.1 200 54.5
CSS0021373 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 5.9e-49 198.4 173 61.8
Sc09g0010680 Simmondsia chinensis HOM05D004800 ORTHO05D005842 5.9e-49 198.4 192 55.2
Sed0002840 Sechium edule HOM05D004800 ORTHO05D005842 1.7e-48 196.8 201 53.7
Manes.16G130200 Manihot esculenta HOM05D004800 ORTHO05D005842 2.3e-48 196.4 206 52.9
Sabra18G0021000 Salix brachista HOM05D004800 ORTHO05D005842 2.3e-48 196.4 202 54.5
Cc08_g07200 Coffea canephora HOM05D004800 ORTHO05D005842 3.9e-48 195.7 206 53.9
Oeu009650.1 Olea europaea HOM05D004800 ORTHO05D005842 5.0e-48 195.3 207 50.7
Ca_15781_v3 Cicer arietinum L. HOM05D004800 ORTHO05D005842 6.6e-48 194.9 199 52.3
GSVIVG01035974001 Vitis vinifera HOM05D004800 ORTHO05D005842 6.6e-48 194.9 178 55.1
DCAR_022862 Daucus carota HOM05D004800 ORTHO05D005842 1.5e-47 193.7 200 52.5
Atru.chr7.2559 Acer truncatum HOM05D004800 ORTHO05D005842 2.5e-47 193.0 189 55.0
Sabra06G0206800 Salix brachista HOM05D004800 ORTHO05D005842 2.5e-47 193.0 194 54.6
TWI34G0615 Tripterygium wilfordii HOM05D004800 ORTHO05D005842 7.3e-47 191.4 193 54.4
CiPaw.08G005800 Carya illinoinensis HOM05D004800 ORTHO05D005842 1.6e-46 190.3 220 50.9
Hund02986 Selenicereus undatus HOM05D004800 ORTHO05D005842 1.6e-46 190.3 199 51.3
CANSAT25G3039 Cannabis sativa HOM05D004800 ORTHO05D005842 2.8e-46 189.5 196 53.6
HanXRQChr13g0411011 Helianthus annuus HOM05D004800 ORTHO05D005842 2.8e-46 189.5 202 50.5
Medtr3g105925 Medicago truncatula HOM05D004800 ORTHO05D005842 2.8e-46 189.5 203 49.3
Actinidia14132 Actinidia chinensis HOM05D004800 ORTHO05D005842 3.6e-46 189.1 202 54.5
PSO384G2235 Papaver somniferum HOM05D004800 ORTHO05D005842 6.2e-46 188.3 189 52.4
TWI32G1317 Tripterygium wilfordii HOM05D004800 ORTHO05D005842 6.2e-46 188.3 192 53.6
PSO339G1021 Papaver somniferum HOM05D004800 ORTHO05D005842 8.0e-46 188.0 203 50.7
Nitab4.5_0010613g0010 Nicotiana tabacum HOM05D004800 ORTHO05D005842 2.3e-45 186.4 215 51.6
PGR044G1902 Punica granatum HOM05D004800 ORTHO05D005842 5.2e-45 185.3 198 53.5
unitig_749.g13819 Utricularia gibba HOM05D004800 ORTHO05D005842 1.2e-44 184.1 198 51.5
Lalb_Chr11g0063501 Lupinus albus HOM05D004800 ORTHO05D005842 1.5e-44 183.7 171 56.7
Eucgr.C02606 Eucalyptus grandis HOM05D004800 ORTHO05D005842 2.0e-44 183.3 189 52.9
Eucgr.L02918 Eucalyptus grandis HOM05D004800 ORTHO05D005842 2.6e-44 183.0 206 51.0
AUR62024801 Chenopodium quinoa HOM05D004800 ORTHO05D005842 4.4e-44 182.2 194 51.0
QL02p018802 Quercus lobata HOM05D004800 ORTHO05D005842 4.4e-44 182.2 215 51.2
Lsat_1_v5_gn_5_49760 Lactuca sativa HOM05D004800 ORTHO05D005842 9.8e-44 181.0 214 49.1
AUR62032420 Chenopodium quinoa HOM05D004800 ORTHO05D005842 1.7e-43 180.3 194 49.5
CAN.G333.3 Capsicum annuum HOM05D004800 ORTHO05D005842 2.2e-43 179.9 213 50.2
Actinidia23108 Actinidia chinensis HOM05D004800 ORTHO05D005842 6.4e-43 178.3 223 52.0
Peaxi162Scf00006g00249 Petunia axillaris HOM05D004800 ORTHO05D005842 1.4e-42 177.2 202 48.5
EL10Ac2g02494 Beta vulgaris HOM05D004800 ORTHO05D005842 4.1e-42 175.6 193 48.2
Aqoxy7G03382 Aquilegia oxysepala HOM05D004800 ORTHO05D005842 1.6e-41 173.7 203 48.3
HPP92_017174 Vanilla planifolia HOM05D004800 ORTHO05D005842 1.6e-41 173.7 199 45.2
Solyc07g008750.4 Solanum lycopersicum HOM05D004800 ORTHO05D005842 2.7e-41 172.9 215 47.4
Sopen07g004690 Solanum pennellii HOM05D004800 ORTHO05D005842 2.7e-41 172.9 201 49.8
MD08G1055900 Malus domestica HOM05D004800 ORTHO05D005842 3.5e-41 172.6 196 49.5
PGSC0003DMG401028727 Solanum tuberosum HOM05D004800 ORTHO05D005842 7.8e-41 171.4 212 48.6
CANSAT35G0701 Cannabis sativa HOM05D004800 ORTHO05D005842 6.6e-40 168.3 199 49.2
Glyma.06G061100 Glycine max HOM05D004800 ORTHO05D005842 8.6e-40 167.9 200 45.0
arahy.Tifrunner.gnm1.ann1.D8NHAG Arachis hypogaea HOM05D004800 ORTHO05D005842 1.2e-38 164.1 197 46.2
MELO3C016954.2 Cucumis melo HOM05D004800 ORTHO05D005842 1.2e-38 164.1 199 48.7
CsaV3_4G036490 Cucumis sativus L. HOM05D004800 ORTHO05D005842 1.2e-38 164.1 193 48.7
ClCG05G016220 Citrullus lanatus HOM05D004800 ORTHO05D005842 8.1e-38 161.4 193 48.2
ATR0580G220 Amborella trichopoda HOM05D004800 ORTHO05D005842 1.4e-37 160.6 189 46.6
ECA240G1139 Erigeron canadensis HOM05D004800 ORTHO05D005842 2.0e-36 156.8 147 52.4
Nn2g12411 Nelumbo nucifera HOM05D004800 ORTHO05D005842 6.4e-35 151.8 139 57.6
arahy.Tifrunner.gnm1.ann1.1BAV2G Arachis hypogaea HOM05D004800 ORTHO05D005842 6.0e-33 145.2 197 42.6
CDE02G3876 Ceratophyllum demersum HOM05D004800 ORTHO05D005842 3.0e-32 142.9 190 44.7
Os08g0270200 Oryza sativa ssp. japonica HOM05D004800 ORTHO05D005842 1.9e-31 140.2 209 40.2
Zm00001eb177850 Zea mays HOM05D004800 ORTHO05D005842 2.1e-30 136.7 205 39.5
Peaxi162Scf01038g00137 Petunia axillaris HOM05D004800 ORTHO05D005842 5.2e-29 132.1 123 57.7
SHI21074 Sapria himalayana HOM05D004800 ORTHO05D005842 5.8e-28 128.6 227 37.4
unitig_26.g9784 Utricularia gibba HOM05D004800 ORTHO05D005842 2.9e-27 126.3 202 43.1
Potri.018G018100 Populus trichocarpa HOM05D004800 ORTHO05D005842 2.4e-26 123.2 120 57.5
MBI14_g09103_MAGBIO Magnolia biondii HOM05D004800 ORTHO05D005842 2.7e-25 119.8 195 42.6
Lj5g0013304 Lotus japonicus HOM05D004800 ORTHO05D005842 1.1e-23 114.4 184 40.2
arahy.Tifrunner.gnm1.ann1.CUZL6Q Arachis hypogaea HOM05D004800 ORTHO05D005842 1.9e-23 113.6 200 38.0
arahy.Tifrunner.gnm1.ann1.N4WP0Z Arachis hypogaea HOM05D004800 ORTHO05D005842 1.9e-23 113.6 200 38.0
arahy.Tifrunner.gnm1.ann1.D9UBCD Arachis hypogaea HOM05D004800 ORTHO05D005842 3.3e-23 112.8 200 37.5
arahy.Tifrunner.gnm1.ann1.YE5PM3 Arachis hypogaea HOM05D004800 ORTHO05D005842 2.1e-22 110.2 200 37.0
Nitab4.5_0000617g0080 Nicotiana tabacum HOM05D004800 ORTHO05D005842 3.6e-22 109.4 85 61.2
VMungo0647G1387 Vigna mungo HOM05D004800 ORTHO05D005842 2.4e-21 106.7 200 37.5
Phvul.001G041300 Phaseolus vulgaris HOM05D004800 ORTHO05D005842 5.2e-21 105.5 200 34.5
Pp3c2_14120 Physcomitrium patens HOM05D004800 ORTHO05D005842 5.8e-20 102.1 175 36.6
Mapoly0130s0032 Marchantia polymorpha HOM05D004800 ORTHO05D005842 9.9e-20 101.3 181 34.8
Glyma.14G101700 Glycine max HOM05D004800 ORTHO05D005842 1.9e-18 97.1 199 33.2
AagrBONN_evm.TU.Sc2ySwM_368.3173 Anthoceros agrestis HOM05D004800 ORTHO05D005842 1.0e-16 91.3 177 34.5
Psat6g026000 Pisum sativum HOM05D004800 ORTHO05D005842 3.0e-16 89.7 182 33.0
SMO140G0030 Selaginella moellendorffii HOM05D004800 ORTHO05D005842 6.6e-16 88.6 190 34.2
TPR.G38911 Trifolium pratense HOM05D004800 ORTHO05D005842 5.6e-15 85.5 192 30.7
Medtr1g014130 Medicago truncatula HOM05D004800 ORTHO05D005842 3.1e-13 79.7 171 32.7
CBR_g8579 Chara braunii HOM05D004800 ORTHO05D005842 1.1e-10 71.2 142 31.0
Zm00001eb353150 Zea mays HOM05D004800 ORTHO05D005842 7.9e-09 65.1 139 34.5
SEGI_18119 Sequoiadendron giganteum HOM05D004800 ORTHO05D005842 1.3e-08 64.3 95 32.6
Lalb_Chr24g0401961 Lupinus albus HOM05D004800 ORTHO05D005842 2.3e-08 63.5 86 40.7
MCO11G643 Micromonas commoda HOM05D004800 ORTHO05D005842 8.7e-08 61.6 114 32.5
Sopen01g020190 Solanum pennellii HOM05D004800 ORTHO05D005842 1.6e-06 57.4 73 50.7
TPR.G28957 Trifolium pratense HOM05D000201 ORTHO05D000421 6.2e-06 55.5 50 46.0
Sopen01g040360 Solanum pennellii HOM05D004800 ORTHO05D005842 8.1e-06 55.1 73 47.9
Sopen07g026310 Solanum pennellii HOM05D004800 ORTHO05D005842 8.1e-06 55.1 73 47.9


User provided reference genes

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