Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung02246 Brassica carinata HOM05D004992 ORTHO05D006004 1.7e-60 235.7 114 100.0
Thhalv10027254m.g Eutrema salsugineum HOM05D004992 ORTHO05D006004 1.3e-44 183.0 114 78.9
A01p13110 Brassica napus HOM05D004992 ORTHO05D006004 1.1e-43 179.9 116 79.3
BcaC09g51203 Brassica carinata HOM05D004992 ORTHO05D006004 1.5e-43 179.5 117 78.6
C01p15800 Brassica napus HOM05D004992 ORTHO05D006004 1.5e-43 179.5 117 78.6
BolC1t01533H Brassica oleracea HOM05D004992 ORTHO05D006004 1.5e-43 179.5 117 78.6
BraA01t01254Z Brassica rapa HOM05D004992 ORTHO05D006004 3.3e-43 178.3 117 79.5
AL7G32150 Arabidopsis lyrata HOM05D004992 ORTHO05D006004 8.9e-41 170.2 118 77.1
AT4G21780 Arabidopsis thaliana HOM05D004992 ORTHO05D006004 8.9e-41 170.2 117 76.9
Sp7g19950 Schrenkiella parvula HOM05D004992 ORTHO05D006004 1.1e-38 163.3 114 73.7
Carub.0007s1962 Capsella rubella HOM05D004992 ORTHO05D006004 2.3e-36 155.6 118 71.2
CARHR228520 Cardamine hirsuta HOM05D004992 ORTHO05D006004 1.5e-35 152.9 117 73.5
Aa31LG6G3760 Aethionema arabicum HOM05D004992 ORTHO05D006004 2.1e-26 122.5 119 56.3
THA.LOC104806295 Tarenaya hassleriana HOM05D004992 ORTHO05D006004 1.7e-23 112.8 109 54.1
TWI38G1979 Tripterygium wilfordii HOM05D004992 ORTHO05D006004 5.6e-19 97.8 119 47.9
Cpa.g.sc198.27 Carica papaya HOM05D004992 ORTHO05D006004 7.3e-19 97.4 109 53.2
COL.COLO4_31744 Corchorus olitorius HOM05D004992 ORTHO05D006004 1.1e-17 93.6 113 50.4
Duzib192G0598 Durio zibethinus HOM05D004992 ORTHO05D006004 4.0e-17 91.7 112 50.9
FAN21G0406 Fragaria x ananassa HOM05D004992 ORTHO05D006004 9.0e-17 90.5 117 50.4
Duzib235G0746 Durio zibethinus HOM05D004992 ORTHO05D006004 1.5e-16 89.7 109 47.7
FvH4_3g02450 Fragaria vesca HOM05D004992 ORTHO05D006004 1.5e-16 89.7 117 50.4
VMungo0540G0931 Vigna mungo HOM05D004992 ORTHO05D006004 1.5e-16 89.7 110 48.2
Potri.004G018600 Populus trichocarpa HOM05D004992 ORTHO05D006004 2.6e-16 89.0 115 45.2
FAN25G3450 Fragaria x ananassa HOM05D004992 ORTHO05D006004 3.4e-16 88.6 115 51.3
Manes.17G037200 Manihot esculenta HOM05D004992 ORTHO05D006004 3.4e-16 88.6 116 44.8
Haze_06774 Corylus avellana HOM05D003428 ORTHO05D004131 4.5e-16 88.2 108 46.3
Phvul.006G151000 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 4.5e-16 88.2 110 45.5
Sabra04G0010400 Salix brachista HOM05D003428 ORTHO05D004131 4.5e-16 88.2 113 46.0
Cfa000249 Carpinus fangiana HOM05D004992 ORTHO05D006004 5.8e-16 87.8 108 46.3
Thecc.06G217500 Theobroma cacao HOM05D004992 ORTHO05D006004 5.8e-16 87.8 110 48.2
Ciclev10016836m.g Citrus clementina HOM05D004992 ORTHO05D006004 7.6e-16 87.4 114 45.6
Gohir.D06G153200 Gossypium hirsutum HOM05D004992 ORTHO05D006004 7.6e-16 87.4 111 45.0
Gorai.010G179200 Gossypium raimondii HOM05D004992 ORTHO05D006004 7.6e-16 87.4 111 45.0
TWI38G1613 Tripterygium wilfordii HOM05D004992 ORTHO05D006004 7.6e-16 87.4 109 45.9
Gohir.A06G147400 Gossypium hirsutum HOM05D004992 ORTHO05D006004 9.9e-16 87.0 111 45.0
arahy.Tifrunner.gnm1.ann1.9Z1Z9Z Arachis hypogaea HOM05D004992 ORTHO05D006004 1.7e-15 86.3 108 45.4
CiPaw.09G089400 Carya illinoinensis HOM05D004992 ORTHO05D006004 1.7e-15 86.3 108 47.2
QL05p074036 Quercus lobata HOM05D004992 ORTHO05D006004 1.1e-14 83.6 112 44.6
CiPaw.10G069500 Carya illinoinensis HOM05D004992 ORTHO05D006004 1.4e-14 83.2 110 43.6
Nitab4.5_0010096g0060 Nicotiana tabacum HOM05D004992 ORTHO05D006004 1.4e-14 83.2 119 45.4
Lj4g0012462 Lotus japonicus HOM05D004992 ORTHO05D006004 1.9e-14 82.8 108 46.3
arahy.Tifrunner.gnm1.ann1.FJ4Y8F Arachis hypogaea HOM05D004992 ORTHO05D006004 2.4e-14 82.4 108 43.5
Prupe.4G023900 Prunus persica HOM05D004992 ORTHO05D006004 2.4e-14 82.4 119 45.4
Glyma.13G206400 Glycine max HOM05D004992 ORTHO05D006004 4.2e-14 81.6 113 44.2
Manes.16G010000 Manihot esculenta HOM05D004992 ORTHO05D006004 5.4e-14 81.3 109 46.8
Ca_00623_v3 Cicer arietinum L. HOM05D004992 ORTHO05D006004 1.6e-13 79.7 120 42.5
arahy.Tifrunner.gnm1.ann1.PC5S43 Arachis hypogaea HOM05D004992 ORTHO05D006004 2.1e-13 79.3 117 43.6
Medtr2g022820 Medicago truncatula HOM05D004992 ORTHO05D006004 3.5e-13 78.6 111 41.4
Solyc02g080360.1 Solanum lycopersicum HOM05D004992 ORTHO05D006004 3.5e-13 78.6 114 42.1
Sopen02g025060 Solanum pennellii HOM05D004992 ORTHO05D006004 3.5e-13 78.6 114 42.1
GSVIVG01012656001 Vitis vinifera HOM05D004992 ORTHO05D006004 3.5e-13 78.6 117 42.7
Lalb_Chr18g0056231 Lupinus albus HOM05D004992 ORTHO05D006004 1.0e-12 77.0 117 42.7
RcHm_v2.0_Chr5g0003701 Rosa chinensis HOM05D004992 ORTHO05D006004 1.0e-12 77.0 116 44.8
arahy.Tifrunner.gnm1.ann1.T879FL Arachis hypogaea HOM05D004992 ORTHO05D006004 1.3e-12 76.6 117 42.7
Glyma.17G015100 Glycine max HOM05D004992 ORTHO05D006004 2.3e-12 75.9 114 46.5
Sed0007059 Sechium edule HOM05D004992 ORTHO05D006004 2.3e-12 75.9 110 43.6
Potri.011G000400 Populus trichocarpa HOM05D004992 ORTHO05D006004 6.7e-12 74.3 115 41.7
Peaxi162Scf00262g00051 Petunia axillaris HOM05D004992 ORTHO05D006004 8.7e-12 73.9 115 44.3
PGSC0003DMG400016488 Solanum tuberosum HOM05D004992 ORTHO05D006004 1.1e-11 73.6 115 40.0
arahy.Tifrunner.gnm1.ann1.Z4K8V6 Arachis hypogaea HOM05D004992 ORTHO05D006004 1.5e-11 73.2 117 41.9
TPR.G7639 Trifolium pratense HOM05D004992 ORTHO05D006004 1.5e-11 73.2 111 37.8
CSS0017416 Camellia sinensis var. sinensis HOM05D004992 ORTHO05D006004 2.5e-11 72.4 121 38.8
Sed0000784 Sechium edule HOM05D004992 ORTHO05D006004 2.5e-11 72.4 106 42.5
Phvul.003G077200 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 3.3e-11 72.0 112 43.8
ClCG01G022080 Citrullus lanatus HOM05D004992 ORTHO05D006004 5.6e-11 71.2 108 43.5
Glyma.07G259100 Glycine max HOM05D004992 ORTHO05D006004 5.6e-11 71.2 117 43.6
MELO3C007381.2 Cucumis melo HOM05D004992 ORTHO05D006004 9.6e-11 70.5 108 41.7
Hma1.2p1_0091F.1_g046260 Hydrangea macrophylla HOM05D004992 ORTHO05D006004 1.3e-10 70.1 109 38.5
Dinv13873 Davidia involucrata HOM05D004992 ORTHO05D006004 3.6e-10 68.6 114 42.1
Eucgr.D01305 Eucalyptus grandis HOM05D004992 ORTHO05D006004 6.2e-10 67.8 111 36.9
Eucgr.L03501 Eucalyptus grandis HOM05D004992 ORTHO05D006004 6.2e-10 67.8 111 36.9
Oeu051218.1 Olea europaea HOM05D004992 ORTHO05D006004 6.2e-10 67.8 114 38.6
PGR042G3122 Punica granatum HOM05D004992 ORTHO05D006004 8.1e-10 67.4 119 37.0
CSS0025190 Camellia sinensis var. sinensis HOM05D004992 ORTHO05D006004 2.4e-09 65.9 108 37.0
CSS0030561 Camellia sinensis var. sinensis HOM05D004992 ORTHO05D006004 2.4e-09 65.9 108 37.0
CANSAT56G2390 Cannabis sativa HOM05D004992 ORTHO05D006004 2.4e-09 65.9 115 36.5
ClCG03G004870 Citrullus lanatus HOM05D004992 ORTHO05D006004 3.1e-09 65.5 112 38.4
VMungo1215G1625 Vigna mungo HOM05D004992 ORTHO05D006004 3.1e-09 65.5 106 40.6
EL10Ac8g20021 Beta vulgaris HOM05D004992 ORTHO05D006004 5.3e-09 64.7 118 37.3
Ciclev10009906m.g Citrus clementina HOM05D004992 ORTHO05D006004 1.5e-08 63.2 114 40.4
Medtr4g131880 Medicago truncatula HOM05D004992 ORTHO05D006004 1.5e-08 63.2 106 38.7
MELO3C002469.2 Cucumis melo HOM05D004992 ORTHO05D006004 2.0e-08 62.8 115 36.5
Duzib268G1102 Durio zibethinus HOM05D004992 ORTHO05D006004 2.0e-08 62.8 119 42.9
TPR.G37097 Trifolium pratense HOM05D004992 ORTHO05D006004 2.0e-08 62.8 110 38.2
Manes.03G126800 Manihot esculenta HOM05D004992 ORTHO05D006004 2.6e-08 62.4 123 39.0
Nn1g07103 Nelumbo nucifera HOM05D004992 ORTHO05D006004 3.4e-08 62.0 108 38.9
TWI38G2258 Tripterygium wilfordii HOM05D004992 ORTHO05D006004 3.4e-08 62.0 119 39.5
Rhsim04G0000900 Rhododendron simsii HOM05D004992 ORTHO05D006004 4.5e-08 61.6 111 37.8
Rhsim04G0002000 Rhododendron simsii HOM05D004992 ORTHO05D006004 4.5e-08 61.6 111 37.8
Eucgr.E04090 Eucalyptus grandis HOM05D004992 ORTHO05D006004 7.6e-08 60.8 106 36.8
Eucgr.F03448 Eucalyptus grandis HOM05D004992 ORTHO05D006004 7.6e-08 60.8 111 36.0
MD10G1317900 Malus domestica HOM05D004992 ORTHO05D006004 7.6e-08 60.8 126 38.1
TPR.G29123 Trifolium pratense HOM05D004992 ORTHO05D006004 7.6e-08 60.8 113 40.7
TAR624G0245 Trochodendron aralioides HOM05D004992 ORTHO05D006004 7.6e-08 60.8 119 37.8
Thecc.07G043900 Theobroma cacao HOM05D004992 ORTHO05D006004 9.9e-08 60.5 119 40.3
CsaV3_1G010900 Cucumis sativus L. HOM05D004992 ORTHO05D006004 1.7e-07 59.7 108 37.0
Cc09_g01920 Coffea canephora HOM05D004992 ORTHO05D006004 2.9e-07 58.9 115 36.5
TPR.G37044 Trifolium pratense HOM05D004992 ORTHO05D006004 2.9e-07 58.9 109 37.6
Peaxi162Scf00203g00113 Petunia axillaris HOM05D004992 ORTHO05D006004 3.8e-07 58.5 115 36.5
Potri.001G421100 Populus trichocarpa HOM05D004992 ORTHO05D006004 3.8e-07 58.5 120 38.3
Prupe.4G209300 Prunus persica HOM05D004992 ORTHO05D006004 3.8e-07 58.5 115 38.3
Ah.09g235060 Amaranthus hybridus HOM05D004992 ORTHO05D006004 4.9e-07 58.2 125 36.0
Lalb_Chr17g0348391 Lupinus albus HOM05D004992 ORTHO05D006004 6.4e-07 57.8 108 35.2
MBI18_g24808_MAGBIO Magnolia biondii HOM05D004992 ORTHO05D006004 6.4e-07 57.8 109 37.6
SGA_v2.0_scaffold7G03870 Striga asiatica HOM05D004992 ORTHO05D006004 6.4e-07 57.8 120 38.3
arahy.Tifrunner.gnm1.ann1.WBSQ2D Arachis hypogaea HOM05D004992 ORTHO05D006004 1.9e-06 56.2 116 34.5
Lsat_1_v5_gn_7_17380 Lactuca sativa HOM05D004992 ORTHO05D006004 1.9e-06 56.2 115 33.0
Lsat_1_v5_gn_9_94121 Lactuca sativa HOM05D004992 ORTHO05D006004 1.9e-06 56.2 119 33.6
ATR0752G182 Amborella trichopoda HOM05D004992 ORTHO05D006004 2.4e-06 55.8 112 36.6
CsaV3_6G049140 Cucumis sativus L. HOM05D004992 ORTHO05D006004 3.2e-06 55.5 102 38.2
Phvul.008G265000 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 3.2e-06 55.5 111 32.4
arahy.Tifrunner.gnm1.ann1.R1VD00 Arachis hypogaea HOM05D004992 ORTHO05D006004 4.2e-06 55.1 109 35.8
CANSAT21G1815 Cannabis sativa HOM05D004992 ORTHO05D006004 4.2e-06 55.1 121 36.4
Migut.M01366 Erythranthe guttata HOM05D004992 ORTHO05D006004 4.2e-06 55.1 112 36.6
Sc17g0007220 Simmondsia chinensis HOM05D004992 ORTHO05D006004 5.5e-06 54.7 126 33.3
Rhsim06G0215300 Rhododendron simsii HOM05D004992 ORTHO05D006004 7.1e-06 54.3 114 34.2
Atru.chr10.2180 Acer truncatum HOM05D004992 ORTHO05D006004 9.3e-06 53.9 74 41.9
Manes.15G073800 Manihot esculenta HOM05D004992 ORTHO05D006004 9.3e-06 53.9 120 35.0


User provided reference genes

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