Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung02203 Brassica carinata HOM05D005696 ORTHO05D007099 9.5e-89 330.1 161 100.0
Sp6g28350 Schrenkiella parvula HOM05D005696 ORTHO05D007099 1.1e-76 290.0 161 86.3
BolC9t58974H Brassica oleracea HOM05D005696 ORTHO05D007099 3.2e-76 288.5 161 85.1
Thhalv10014892m.g Eutrema salsugineum HOM05D005696 ORTHO05D007099 5.4e-76 287.7 161 86.3
C09p61330 Brassica napus HOM05D005696 ORTHO05D007099 7.1e-76 287.3 161 85.1
C02p07960 Brassica napus HOM05D005696 ORTHO05D007099 9.2e-76 287.0 159 88.1
A10p23260 Brassica napus HOM05D005696 ORTHO05D007099 2.1e-75 285.8 161 84.5
BcaC03g18448 Brassica carinata HOM05D005696 ORTHO05D007099 3.5e-75 285.0 159 88.1
BolC2t06719H Brassica oleracea HOM05D005696 ORTHO05D007099 3.5e-75 285.0 159 88.1
BraA02t05292Z Brassica rapa HOM05D005696 ORTHO05D007099 4.6e-75 284.6 159 86.8
BraA10t44394Z Brassica rapa HOM05D005696 ORTHO05D007099 6.0e-75 284.3 161 83.9
A02p03210 Brassica napus HOM05D005696 ORTHO05D007099 4.3e-73 278.1 159 84.9
BcaC04g18939 Brassica carinata HOM05D005696 ORTHO05D007099 4.9e-69 264.6 161 80.1
AT5G15770 Arabidopsis thaliana HOM05D005696 ORTHO05D007099 3.2e-68 261.9 147 83.7
AL6G26610 Arabidopsis lyrata HOM05D005696 ORTHO05D007099 3.5e-67 258.5 145 83.4
CARHR197560 Cardamine hirsuta HOM05D005696 ORTHO05D007099 7.8e-67 257.3 145 82.8
Carub.0006s1392 Capsella rubella HOM05D005696 ORTHO05D007099 5.1e-66 254.6 145 82.1
Aa31LG5G12820 Aethionema arabicum HOM05D005696 ORTHO05D007099 2.8e-64 248.8 155 75.5
Aa31LG11G13810 Aethionema arabicum HOM05D005696 ORTHO05D007099 3.4e-62 241.9 155 73.5
THA.LOC104820979 Tarenaya hassleriana HOM05D005696 ORTHO05D007099 5.8e-62 241.1 156 71.8
COL.COLO4_29734 Corchorus olitorius HOM05D005696 ORTHO05D007099 1.8e-55 219.5 154 66.9
SalBow6G6426 Salvia bowleyana HOM05D005696 ORTHO05D007099 1.5e-54 216.5 144 67.4
Cfa016607 Carpinus fangiana HOM05D005696 ORTHO05D007099 5.8e-54 214.5 148 67.6
Cpa.g.sc5.19 Carica papaya HOM05D005696 ORTHO05D007099 7.6e-54 214.2 140 71.4
Manes.08G025300 Manihot esculenta HOM05D005696 ORTHO05D007099 7.6e-54 214.2 157 65.6
Sabra18G0074700 Salix brachista HOM05D005696 ORTHO05D007099 7.6e-54 214.2 144 68.8
Dinv21209 Davidia involucrata HOM05D005696 ORTHO05D007099 9.9e-54 213.8 148 66.2
Duzib106G0894 Durio zibethinus HOM05D005696 ORTHO05D007099 9.9e-54 213.8 154 64.9
SalBow3G1016 Salvia bowleyana HOM05D005696 ORTHO05D007099 1.3e-53 213.4 148 64.2
Atru.chr8.1538 Acer truncatum HOM05D005696 ORTHO05D007099 1.7e-53 213.0 154 63.6
Ah.01g020980 Amaranthus hybridus HOM05D005696 ORTHO05D007099 2.2e-53 212.6 155 64.5
AUR62028517 Chenopodium quinoa HOM05D005696 ORTHO05D007099 2.2e-53 212.6 153 62.7
Ca_09006_v3 Cicer arietinum L. HOM05D005696 ORTHO05D007099 3.8e-53 211.8 148 67.6
Haze_19611 Corylus avellana HOM05D005696 ORTHO05D007099 3.8e-53 211.8 148 67.6
TWI53G1247 Tripterygium wilfordii HOM05D005696 ORTHO05D007099 3.8e-53 211.8 153 64.7
Rhsim03G0075100 Rhododendron simsii HOM05D005696 ORTHO05D007099 4.9e-53 211.5 153 64.7
Glyma.19G194929 Glycine max HOM05D005696 ORTHO05D007099 6.4e-53 211.1 152 63.2
PGR142G1689 Punica granatum HOM05D005696 ORTHO05D007099 6.4e-53 211.1 151 66.2
TPR.G30027 Trifolium pratense HOM05D005696 ORTHO05D007099 6.4e-53 211.1 148 65.5
CSS0033781 Camellia sinensis var. sinensis HOM05D005696 ORTHO05D007099 8.4e-53 210.7 153 63.4
Ciclev10012817m.g Citrus clementina HOM05D005696 ORTHO05D007099 8.4e-53 210.7 154 61.7
Potri.018G086400 Populus trichocarpa HOM05D005696 ORTHO05D007099 8.4e-53 210.7 144 68.8
SGA_v2.0_scaffold75G24749 Striga asiatica HOM05D005696 ORTHO05D007099 8.4e-53 210.7 148 63.5
CsaV3_3G037280 Cucumis sativus L. HOM05D005696 ORTHO05D007099 1.1e-52 210.3 156 61.5
ECA240G0707 Erigeron canadensis HOM05D005696 ORTHO05D007099 1.1e-52 210.3 155 65.8
unitig_744.g24697 Utricularia gibba HOM05D001616 ORTHO05D007099 1.1e-52 210.3 150 62.0
Aqoxy1G00460 Aquilegia oxysepala HOM05D005696 ORTHO05D007099 1.4e-52 209.9 150 65.3
Glyma.03G195900 Glycine max HOM05D005696 ORTHO05D007099 1.4e-52 209.9 148 65.5
Nitab4.5_0000794g0110 Nicotiana tabacum HOM05D005696 ORTHO05D007099 1.4e-52 209.9 153 64.1
Medtr7g104610 Medicago truncatula HOM05D005696 ORTHO05D007099 1.9e-52 209.5 148 65.5
Phvul.001G189800 Phaseolus vulgaris HOM05D005696 ORTHO05D007099 1.9e-52 209.5 149 65.1
Thecc.05G089100 Theobroma cacao HOM05D005696 ORTHO05D007099 2.4e-52 209.1 154 63.6
VMungo1383G2828 Vigna mungo HOM05D005696 ORTHO05D007099 2.4e-52 209.1 148 65.5
Gorai.002G158300 Gossypium raimondii HOM05D005696 ORTHO05D007099 3.2e-52 208.8 154 64.9
CANSAT80G0528 Cannabis sativa HOM05D005696 ORTHO05D007099 4.2e-52 208.4 152 64.5
arahy.Tifrunner.gnm1.ann1.NXU1NB Arachis hypogaea HOM05D005696 ORTHO05D007099 5.4e-52 208.0 148 66.2
Lalb_Chr01g0018151 Lupinus albus HOM05D005696 ORTHO05D007099 5.4e-52 208.0 144 66.7
Oeu017678.1 Olea europaea HOM05D005696 ORTHO05D007099 5.4e-52 208.0 153 60.8
Oeu017679.1 Olea europaea HOM05D005696 ORTHO05D007099 5.4e-52 208.0 153 60.8
MSTRG.19260 Avicennia marina HOM05D005696 ORTHO05D007099 7.1e-52 207.6 153 61.4
ClCG10G018970 Citrullus lanatus HOM05D005696 ORTHO05D007099 7.1e-52 207.6 160 61.2
MD06G1040400 Malus domestica HOM05D005696 ORTHO05D007099 7.1e-52 207.6 148 65.5
QL07p039009 Quercus lobata HOM05D005696 ORTHO05D007099 7.1e-52 207.6 153 64.1
Lj2P1003T8 Lonicera japonica HOM05D005696 ORTHO05D007099 9.3e-52 207.2 153 62.7
Sed0022063 Sechium edule HOM05D005696 ORTHO05D007099 9.3e-52 207.2 156 60.9
Lj2P137T17 Lonicera japonica HOM05D005696 ORTHO05D007099 1.2e-51 206.8 153 63.4
QL07p038757 Quercus lobata HOM05D005696 ORTHO05D007099 1.2e-51 206.8 153 63.4
Gohir.A01G138000 Gossypium hirsutum HOM05D005696 ORTHO05D007099 1.6e-51 206.5 154 64.3
Sed0001709 Sechium edule HOM05D005696 ORTHO05D007099 1.6e-51 206.5 148 62.8
GSVIVG01033843001 Vitis vinifera HOM05D005696 ORTHO05D007099 1.6e-51 206.5 154 61.7
CAN.G397.49 Capsicum annuum HOM05D005696 ORTHO05D007099 2.1e-51 206.1 144 66.7
Gohir.D01G127700 Gossypium hirsutum HOM05D005696 ORTHO05D007099 2.1e-51 206.1 154 64.3
Rhsim03G0187900 Rhododendron simsii HOM05D005696 ORTHO05D007099 2.1e-51 206.1 158 60.8
TPR.G22495 Trifolium pratense HOM05D005696 ORTHO05D007099 2.1e-51 206.1 141 66.7
MELO3C009473.2 Cucumis melo HOM05D005696 ORTHO05D007099 2.7e-51 205.7 154 62.3
Psat3g033280 Pisum sativum HOM05D005696 ORTHO05D007099 2.7e-51 205.7 148 64.2
DCAR_013385 Daucus carota HOM05D005696 ORTHO05D007099 3.5e-51 205.3 148 64.9
EL10Ac7g16916 Beta vulgaris HOM05D005696 ORTHO05D007099 4.6e-51 204.9 157 62.4
CiPaw.09G014000 Carya illinoinensis HOM05D005696 ORTHO05D007099 6.0e-51 204.5 156 64.1
TPR.G19517 Trifolium pratense HOM05D005696 ORTHO05D007099 7.9e-51 204.1 141 66.7
Sc02g0000250 Simmondsia chinensis HOM05D005696 ORTHO05D007099 1.0e-50 203.8 142 65.5
TAR374G1347 Trochodendron aralioides HOM05D005696 ORTHO05D007099 1.0e-50 203.8 156 63.5
Aqoxy2G01202 Aquilegia oxysepala HOM05D005696 ORTHO05D007099 1.3e-50 203.4 150 62.0
Cc03_g11090 Coffea canephora HOM05D005696 ORTHO05D007099 1.8e-50 203.0 148 62.2
TWI77G0870 Tripterygium wilfordii HOM05D005696 ORTHO05D007099 2.3e-50 202.6 158 61.4
Eucgr.K02040 Eucalyptus grandis HOM05D005696 ORTHO05D007099 3.0e-50 202.2 144 63.2
PGSC0003DMG400008956 Solanum tuberosum HOM05D005696 ORTHO05D007099 3.0e-50 202.2 153 62.7
Hma1.2p1_0084F.1_g043820 Hydrangea macrophylla HOM05D005696 ORTHO05D007099 3.9e-50 201.8 155 61.3
Hma1.2p1_0820F.1_g223835 Hydrangea macrophylla HOM05D005696 ORTHO05D007099 3.9e-50 201.8 155 61.3
MBI04_g14262_MAGBIO Magnolia biondii HOM05D005696 ORTHO05D007099 3.9e-50 201.8 141 63.1
Lsat_1_v5_gn_7_37701 Lactuca sativa HOM05D005696 ORTHO05D007099 6.7e-50 201.1 154 61.7
Nn2g14158 Nelumbo nucifera HOM05D005696 ORTHO05D007099 1.1e-49 200.3 150 61.3
HanXRQChr03g0060731 Helianthus annuus HOM05D005696 ORTHO05D007099 1.5e-49 199.9 155 61.9
Sopen09g004540 Solanum pennellii HOM05D005696 ORTHO05D007099 3.3e-49 198.7 153 62.1
Solyc09g009780.4 Solanum lycopersicum HOM05D005696 ORTHO05D007099 1.3e-48 196.8 153 61.4
DCAR_007752 Daucus carota HOM05D005696 ORTHO05D007099 2.8e-48 195.7 144 61.1
Hma1.2p1_0232F.1_g097930 Hydrangea macrophylla HOM05D005696 ORTHO05D007099 2.8e-48 195.7 149 62.4
RcHm_v2.0_Chr3g0473671 Rosa chinensis HOM05D005696 ORTHO05D007099 2.8e-48 195.7 148 60.1
MD14G1023000 Malus domestica HOM05D005696 ORTHO05D007099 6.2e-48 194.5 148 60.1
PSO339G3505 Papaver somniferum HOM05D005696 ORTHO05D007099 6.2e-48 194.5 152 59.2
FvH4_6g18700 Fragaria vesca HOM05D005696 ORTHO05D007099 2.4e-47 192.6 148 59.5
FAN05G4755 Fragaria x ananassa HOM05D005696 ORTHO05D007099 6.9e-47 191.0 148 59.5
FAN14G5868 Fragaria x ananassa HOM05D005696 ORTHO05D007099 1.2e-46 190.3 148 58.8
PSO384G1553 Papaver somniferum HOM05D005696 ORTHO05D007099 1.2e-46 190.3 154 57.8
SEGI_17930 Sequoiadendron giganteum HOM05D005696 ORTHO05D007099 1.5e-46 189.9 148 58.1
HanXRQChr07g0189921 Helianthus annuus HOM05D005696 ORTHO05D007099 2.0e-46 189.5 149 60.4
SHI28289 Sapria himalayana HOM05D005696 ORTHO05D007099 7.6e-46 187.6 142 59.2
HPP92_015765 Vanilla planifolia HOM05D005696 ORTHO05D007099 2.2e-45 186.0 142 60.6
Prupe.7G110200 Prunus persica HOM05D005696 ORTHO05D007099 2.9e-45 185.7 144 58.3
CiPaw.10G009800 Carya illinoinensis HOM05D005696 ORTHO05D007099 6.4e-45 184.5 136 64.7
ATR0618G201 Amborella trichopoda HOM05D005696 ORTHO05D007099 1.4e-44 183.3 150 56.7
ATR0605G169 Amborella trichopoda HOM05D005696 ORTHO05D007099 1.3e-40 170.2 143 53.1
Peaxi162Scf00006g00016 Petunia axillaris HOM05D005696 ORTHO05D007099 1.8e-39 166.4 124 63.7
Dinv31687 Davidia involucrata HOM05D005696 ORTHO05D010438 6.9e-39 164.5 122 62.3
AagrBONN_evm.TU.Sc2ySwM_344.341 Anthoceros agrestis HOM05D005696 ORTHO05D007099 9.0e-39 164.1 144 53.5
Os09g0488000 Oryza sativa ssp. japonica HOM05D005696 ORTHO05D007099 5.8e-38 161.4 158 46.2
SMO364G0918 Selaginella moellendorffii HOM05D005696 ORTHO05D007099 3.2e-36 155.6 131 55.0
Zm00001eb189250 Zea mays HOM05D005696 ORTHO05D007099 1.2e-35 153.7 147 50.3
FAN09G4491 Fragaria x ananassa HOM05D005696 ORTHO05D007099 3.9e-34 148.7 119 57.1
Mapoly0046s0019 Marchantia polymorpha HOM05D005696 ORTHO05D007099 3.3e-33 145.6 144 50.0
Os02g0717700 Oryza sativa ssp. japonica HOM05D005696 ORTHO05D007099 7.4e-33 144.4 145 49.0
Migut.C00979 Erythranthe guttata HOM05D005696 ORTHO05D007099 2.2e-32 142.9 97 64.9
MCO13G065 Micromonas commoda HOM05D005696 ORTHO05D007099 2.4e-31 139.4 159 45.9
VMungo0540G0323 Vigna mungo HOM05D005696 ORTHO05D007099 9.0e-31 137.5 133 52.6
Peaxi162Scf00068g02511 Petunia axillaris HOM05D005696 ORTHO05D007099 1.2e-30 137.1 102 64.7
Cre12.g560200 Chlamydomonas reinhardtii HOM05D005696 ORTHO05D007099 1.7e-29 133.3 143 44.8
PRCOL_00001568 Prasinoderma coloniale HOM05D005696 ORTHO05D007099 8.5e-29 131.0 141 48.9
Aqoxy5G03051 Aquilegia oxysepala HOM05D005696 ORTHO05D007099 3.2e-28 129.0 97 58.8
SEGI_26718 Sequoiadendron giganteum HOM05D005696 ORTHO05D007099 3.0e-26 122.5 97 57.7
CBR_g37710 Chara braunii HOM05D005696 ORTHO05D007099 2.4e-23 112.8 142 41.5
VMungo1383G2413 Vigna mungo HOM05D005696 ORTHO05D007099 2.6e-22 109.4 149 40.3
Pp3c14_20090 Physcomitrium patens HOM05D005696 ORTHO05D007099 1.0e-21 107.5 85 57.6
AagrBONN_evm.TU.Sc2ySwM_362.2223 Anthoceros agrestis HOM05D005696 ORTHO05D007099 4.2e-20 102.1 87 52.9
MD12G1036200 Malus domestica HOM05D005696 ORTHO05D007099 1.5e-17 93.6 78 52.6


User provided reference genes

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