Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung02186 Brassica carinata HOM05D004488 ORTHO05D005374 9.0e-105 383.6 200 100.0
C07p59770 Brassica napus HOM05D004488 ORTHO05D005374 1.9e-102 375.9 209 95.7
BolC7t46423H Brassica oleracea HOM05D004488 ORTHO05D005374 1.9e-102 375.9 209 95.7
Sp7g31350 Schrenkiella parvula HOM05D004488 ORTHO05D005374 9.3e-94 347.1 197 90.9
BraA03t15251Z Brassica rapa HOM05D004488 ORTHO05D005374 6.7e-92 340.9 177 98.9
Thhalv10026279m.g Eutrema salsugineum HOM05D004488 ORTHO05D005374 1.8e-89 332.8 197 88.3
C01p05080 Brassica napus HOM05D004488 ORTHO05D005374 5.3e-89 331.3 200 87.5
BolC1t00490H Brassica oleracea HOM05D004488 ORTHO05D005374 5.3e-89 331.3 200 87.5
A01p04690 Brassica napus HOM05D004488 ORTHO05D005374 1.5e-88 329.7 196 88.3
BraA01t00452Z Brassica rapa HOM05D004488 ORTHO05D005374 1.5e-88 329.7 196 88.3
CARHR241720 Cardamine hirsuta HOM05D004488 ORTHO05D005374 2.5e-86 322.4 202 83.2
AL7G17880 Arabidopsis lyrata HOM05D004488 ORTHO05D005374 4.2e-86 321.6 198 81.8
AT4G33625 Arabidopsis thaliana HOM05D004488 ORTHO05D005374 1.6e-85 319.7 198 81.3
Carub.0007s0681 Capsella rubella HOM05D004488 ORTHO05D005374 3.6e-85 318.5 198 81.3
THA.LOC104807182 Tarenaya hassleriana HOM05D004488 ORTHO05D005374 1.0e-84 317.0 199 80.9
BcaC09g52174 Brassica carinata HOM05D004488 ORTHO05D005374 7.4e-83 310.8 175 90.9
Aa31sc21G80 Aethionema arabicum HOM05D004488 ORTHO05D005374 2.5e-78 295.8 234 69.2
Thecc.02G129200 Theobroma cacao HOM05D004488 ORTHO05D005374 1.7e-71 273.1 189 72.5
FAN20G0168 Fragaria x ananassa HOM05D004488 ORTHO05D005374 2.9e-71 272.3 186 74.7
Manes.07G041900 Manihot esculenta HOM05D004488 ORTHO05D005374 2.9e-71 272.3 192 72.9
Gohir.D13G049600 Gossypium hirsutum HOM05D004488 ORTHO05D005374 8.5e-71 270.8 196 70.9
Eucgr.G00989 Eucalyptus grandis HOM05D004488 ORTHO05D005374 1.1e-70 270.4 182 73.6
Glyma.07G182000 Glycine max HOM05D004488 ORTHO05D005374 1.4e-70 270.0 194 70.1
Gohir.A13G050800 Gossypium hirsutum HOM05D004488 ORTHO05D005374 2.5e-70 269.2 196 70.4
Glyma.08G067800 Glycine max HOM05D004488 ORTHO05D005374 7.2e-70 267.7 172 76.7
Potri.017G043200 Populus trichocarpa HOM05D004488 ORTHO05D005374 7.2e-70 267.7 167 78.4
RcHm_v2.0_Chr6g0270971 Rosa chinensis HOM05D004488 ORTHO05D005374 7.2e-70 267.7 170 79.4
GSVIVG01015661001 Vitis vinifera HOM05D004488 ORTHO05D005374 7.2e-70 267.7 195 69.7
Medtr2g009630 Medicago truncatula HOM05D004488 ORTHO05D005374 2.7e-69 265.8 193 69.4
Phvul.002G213000 Phaseolus vulgaris HOM05D004488 ORTHO05D005374 2.7e-69 265.8 172 77.3
COL.COLO4_32390 Corchorus olitorius HOM05D004488 ORTHO05D005374 4.7e-69 265.0 191 70.2
Ciclev10029296m.g Citrus clementina HOM05D004488 ORTHO05D005374 6.1e-69 264.6 173 76.3
Cpa.g.sc20.3 Carica papaya HOM05D004488 ORTHO05D005374 7.9e-69 264.2 188 70.7
TWI14G0417 Tripterygium wilfordii HOM05D004488 ORTHO05D005374 1.0e-68 263.8 194 70.6
VMungo0251G0098 Vigna mungo HOM05D004488 ORTHO05D005374 1.4e-68 263.5 183 72.7
Manes.10G097800 Manihot esculenta HOM05D004488 ORTHO05D005374 2.3e-68 262.7 184 72.8
CANSAT54G1769 Cannabis sativa HOM05D004488 ORTHO05D005374 6.7e-68 261.2 184 72.3
Dinv16003 Davidia involucrata HOM05D004488 ORTHO05D005374 1.5e-67 260.0 200 68.5
Hund06459 Selenicereus undatus HOM05D004488 ORTHO05D005374 2.0e-67 259.6 174 71.8
SGA_v2.0_scaffold83G26377 Striga asiatica HOM05D004488 ORTHO05D005374 2.0e-67 259.6 193 67.9
FvH4_2g11740 Fragaria vesca HOM05D004488 ORTHO05D005374 2.6e-67 259.2 182 74.2
MD05G1047700 Malus domestica HOM05D004488 ORTHO05D005374 5.7e-67 258.1 174 74.1
TAR381G0147 Trochodendron aralioides HOM05D004488 ORTHO05D005374 5.7e-67 258.1 192 69.8
Nn5g29881 Nelumbo nucifera HOM05D004488 ORTHO05D005374 9.7e-67 257.3 190 69.5
CiPaw.06G157800 Carya illinoinensis HOM05D004488 ORTHO05D005374 1.7e-66 256.5 194 71.1
Prupe.8G070100 Prunus persica HOM05D004488 ORTHO05D005374 1.7e-66 256.5 174 74.1
Sc18g0007070 Simmondsia chinensis HOM05D004488 ORTHO05D005374 2.2e-66 256.1 192 64.6
CSS0028940 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 2.8e-66 255.8 167 75.4
unitig_0.g894 Utricularia gibba HOM05D004488 ORTHO05D005374 2.8e-66 255.8 184 69.0
CiPaw.05G029400 Carya illinoinensis HOM05D004488 ORTHO05D005374 8.2e-66 254.2 193 69.4
CSS0011276 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 1.4e-65 253.4 186 67.2
PGR042G1599 Punica granatum HOM05D004488 ORTHO05D005374 1.4e-65 253.4 170 72.9
QL11p025232 Quercus lobata HOM05D004488 ORTHO05D005374 1.4e-65 253.4 172 70.9
Lalb_Chr16g0382951 Lupinus albus HOM05D004488 ORTHO05D005374 1.8e-65 253.1 175 71.4
Hma1.2p1_0908F.1_g235500 Hydrangea macrophylla HOM05D004488 ORTHO05D005374 2.4e-65 252.7 190 66.3
Actinidia02393 Actinidia chinensis HOM05D004488 ORTHO05D005374 7.0e-65 251.1 194 67.5
Gorai.013G055400 Gossypium raimondii HOM05D004488 ORTHO05D005374 7.0e-65 251.1 179 70.9
Duzib132G0794 Durio zibethinus HOM05D004488 ORTHO05D005374 9.1e-65 250.8 197 65.0
Lj4g0013422 Lotus japonicus HOM05D004488 ORTHO05D005374 9.1e-65 250.8 169 72.8
CSS0006356 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 1.6e-64 250.0 186 66.7
Sabra17G0029400 Salix brachista HOM05D004488 ORTHO05D005374 1.6e-64 250.0 150 80.0
Glyma.13G256500 Glycine max HOM05D004488 ORTHO05D005374 2.0e-64 249.6 194 67.0
Oeu029681.1 Olea europaea HOM05D004488 ORTHO05D005374 2.0e-64 249.6 188 68.1
Lalb_Chr05g0217811 Lupinus albus HOM05D004488 ORTHO05D005374 3.5e-64 248.8 194 63.9
MBI16_g12465_MAGBIO Magnolia biondii HOM05D004488 ORTHO05D005374 3.5e-64 248.8 187 67.4
Phvul.006G201800 Phaseolus vulgaris HOM05D004488 ORTHO05D005374 4.5e-64 248.4 196 65.8
Psat1g214000 Pisum sativum HOM05D004488 ORTHO05D005374 4.5e-64 248.4 195 65.1
HPP92_019609 Vanilla planifolia HOM05D004488 ORTHO05D005374 7.7e-64 247.7 191 67.0
Aqoxy5G01383 Aquilegia oxysepala HOM05D004488 ORTHO05D005374 1.7e-63 246.5 198 62.6
Rhsim11G0142400 Rhododendron simsii HOM05D004488 ORTHO05D005374 2.2e-63 246.1 196 65.3
Actinidia00306 Actinidia chinensis HOM05D004488 ORTHO05D005374 2.9e-63 245.7 163 75.5
Atru.chr6.1271 Acer truncatum HOM05D004488 ORTHO05D005374 3.8e-63 245.4 195 66.2
Nn1g05574 Nelumbo nucifera HOM05D004488 ORTHO05D005374 6.5e-63 244.6 190 68.4
MD10G1054500 Malus domestica HOM05D004488 ORTHO05D005374 8.5e-63 244.2 169 71.6
MSTRG.16621 Avicennia marina HOM05D004488 ORTHO05D005374 1.1e-62 243.8 192 64.1
Migut.B00550 Erythranthe guttata HOM05D004488 ORTHO05D005374 1.9e-62 243.0 183 65.6
arahy.Tifrunner.gnm1.ann1.YWY5YF Arachis hypogaea HOM05D004488 ORTHO05D005374 4.2e-62 241.9 174 70.1
HanXRQChr16g0514551 Helianthus annuus HOM05D004488 ORTHO05D005374 5.5e-62 241.5 192 64.1
Solyc01g105980.3 Solanum lycopersicum HOM05D004488 ORTHO05D005374 7.2e-62 241.1 175 68.0
arahy.Tifrunner.gnm1.ann1.80YYCP Arachis hypogaea HOM05D004488 ORTHO05D005374 9.4e-62 240.7 174 69.5
Sopen01g048360 Solanum pennellii HOM05D004488 ORTHO05D005374 2.1e-61 239.6 175 67.4
Oeu010528.2 Olea europaea HOM05D004488 ORTHO05D005374 6.1e-61 238.0 213 60.1
PGSC0003DMG400033581 Solanum tuberosum HOM05D004488 ORTHO05D005374 6.1e-61 238.0 174 67.8
Ah.01g023950 Amaranthus hybridus HOM05D004488 ORTHO05D005374 8.0e-61 237.7 164 70.1
CDE04G0584 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 8.0e-61 237.7 187 63.6
FAN24G0482 Fragaria x ananassa HOM05D004488 ORTHO05D005374 1.8e-60 236.5 186 68.3
Lsat_1_v5_gn_5_110001 Lactuca sativa HOM05D004488 ORTHO05D005374 4.0e-60 235.3 201 60.7
Rhsim11G0140000 Rhododendron simsii HOM05D004488 ORTHO05D005374 5.2e-60 235.0 223 59.6
Hund00379 Selenicereus undatus HOM05D004488 ORTHO05D005374 5.2e-60 235.0 212 57.5
CsaV3_4G014750 Cucumis sativus L. HOM05D004488 ORTHO05D005374 1.2e-59 233.8 171 67.8
EL10Ac9g22071 Beta vulgaris HOM05D004488 ORTHO05D005374 2.0e-59 233.0 193 59.6
AUR62027109 Chenopodium quinoa HOM05D004488 ORTHO05D005374 2.6e-59 232.6 192 59.9
HanXRQChr10g0289991 Helianthus annuus HOM05D004488 ORTHO05D005374 7.5e-59 231.1 197 61.9
Lj6g0006499 Lotus japonicus HOM05D004488 ORTHO05D005374 7.5e-59 231.1 198 66.2
Peaxi162Scf00299g00625 Petunia axillaris HOM05D004488 ORTHO05D005374 7.5e-59 231.1 197 60.9
AUR62012885 Chenopodium quinoa HOM05D004488 ORTHO05D005374 9.7e-59 230.7 170 64.7
ECA234G4299 Erigeron canadensis HOM05D004488 ORTHO05D005374 9.7e-59 230.7 198 61.6
PSO541G1276 Papaver somniferum HOM05D004488 ORTHO05D005374 9.7e-59 230.7 182 64.8
PSO210G5219 Papaver somniferum HOM05D004488 ORTHO05D005374 2.2e-58 229.6 198 61.1
ATR0767G217 Amborella trichopoda HOM05D004488 ORTHO05D005374 2.8e-58 229.2 201 59.7
SalBow6G2847 Salvia bowleyana HOM05D004488 ORTHO05D005374 2.8e-58 229.2 169 64.5
SalBow6G6277 Salvia bowleyana HOM05D004488 ORTHO05D005374 2.8e-58 229.2 169 64.5
Os07g0118300 Oryza sativa ssp. japonica HOM05D004488 ORTHO05D005374 6.3e-58 228.0 171 66.7
vmacro01860 Vaccinium macrocarpon HOM05D004488 ORTHO05D005374 8.2e-58 227.6 190 61.6
CDE01G0475 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 1.4e-57 226.9 187 63.6
PSO675G8955 Papaver somniferum HOM05D004488 ORTHO05D005374 1.4e-57 226.9 185 63.8
Sed0014769 Sechium edule HOM05D004488 ORTHO05D005374 1.4e-57 226.9 166 68.1
TAR625G0886 Trochodendron aralioides HOM05D004488 ORTHO05D005374 1.4e-57 226.9 195 62.6
CAN.G997.3 Capsicum annuum HOM05D004488 ORTHO05D005374 3.1e-57 225.7 168 66.7
VMungo0540G1072 Vigna mungo HOM05D004488 ORTHO05D005374 5.3e-57 224.9 196 60.7
Rhsim11G0142300 Rhododendron simsii HOM05D004488 ORTHO05D005374 2.7e-56 222.6 169 63.3
ClCG10G009630 Citrullus lanatus HOM05D004488 ORTHO05D005374 3.5e-56 222.2 216 56.9
Potri.007G115800 Populus trichocarpa HOM05D004488 ORTHO05D005374 4.5e-56 221.9 192 61.5
Nitab4.5_0002095g0050 Nicotiana tabacum HOM05D004488 ORTHO05D005374 7.7e-56 221.1 157 68.8
Nitab4.5_0001636g0030 Nicotiana tabacum HOM05D004488 ORTHO05D005374 3.8e-55 218.8 167 64.7
Aqoxy6G00871 Aquilegia oxysepala HOM05D004488 ORTHO05D005374 1.5e-54 216.9 173 67.1
Zm00001eb118020 Zea mays HOM05D004488 ORTHO05D005374 2.5e-54 216.1 169 63.9
Cc02_g20910 Coffea canephora HOM05D004488 ORTHO05D005374 1.2e-53 213.8 185 60.5
SEGI_26358 Sequoiadendron giganteum HOM05D004488 ORTHO05D005374 6.1e-53 211.5 173 60.7
Rhsim11G0139900 Rhododendron simsii HOM05D004488 ORTHO05D005374 1.8e-52 209.9 190 56.3
TAR625G0448 Trochodendron aralioides HOM05D004488 ORTHO05D005374 1.1e-49 200.7 152 67.1
MELO3C018054.2 Cucumis melo HOM05D004488 ORTHO05D005374 2.4e-49 199.5 167 62.3
DCAR_032425 Daucus carota HOM05D004488 ORTHO05D005374 1.5e-46 190.3 180 57.8
Lj5C230T1 Lonicera japonica HOM05D004488 ORTHO05D005374 1.2e-43 180.6 214 48.1
Sed0000556 Sechium edule HOM05D004488 ORTHO05D005374 6.3e-42 174.9 135 64.4
Zm00001eb299000 Zea mays HOM05D004488 ORTHO05D005374 8.3e-42 174.5 156 54.5
SMO361G0551 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 9.2e-41 171.0 167 51.5
SMO361G0333 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 2.7e-40 169.5 182 49.5
AagrBONN_evm.TU.Sc2ySwM_117.2605 Anthoceros agrestis HOM05D004488 ORTHO05D005374 8.6e-39 164.5 168 50.6
DCAR_001857 Daucus carota HOM05D004488 ORTHO05D005374 2.1e-37 159.8 103 75.7
Pp3c13_16610 Physcomitrium patens HOM05D004488 ORTHO05D005374 2.6e-35 152.9 176 47.2
Cfa005736 Carpinus fangiana HOM05D004488 ORTHO05D005374 1.1e-33 147.5 109 71.6
TPR.G9512 Trifolium pratense HOM05D004488 ORTHO05D005374 7.8e-32 141.4 93 71.0
TWI59G0067 Tripterygium wilfordii HOM05D004488 ORTHO05D005374 1.0e-31 141.0 129 60.5
Pp3c15_10510 Physcomitrium patens HOM05D004488 ORTHO05D005374 2.3e-31 139.8 170 44.1
CDE02G2113 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 3.0e-31 139.4 112 64.3
Pp3c4_7970 Physcomitrium patens HOM05D004488 ORTHO05D005374 6.6e-31 138.3 165 46.7
Actinidia28030 Actinidia chinensis HOM05D004488 ORTHO05D005374 1.5e-30 137.1 99 69.7
CSS0017372 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 2.5e-30 136.3 84 76.2
SMO361G0358 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 2.5e-30 136.3 125 56.8
Lj9A348T63 Lonicera japonica HOM05D004488 ORTHO05D005374 3.3e-30 136.0 95 67.4
BraA03t15274Z Brassica rapa HOM05D004488 ORTHO05D005374 4.0e-28 129.0 157 53.5
A03p62120 Brassica napus HOM05D004488 ORTHO05D005374 1.2e-27 127.5 66 98.5
Mapoly0135s0052 Marchantia polymorpha HOM05D004488 ORTHO05D005374 4.4e-27 125.6 190 40.5
Haze_10520 Corylus avellana HOM05D004488 ORTHO05D005374 2.2e-26 123.2 90 70.0
TPR.G8448 Trifolium pratense HOM05D004488 ORTHO05D005374 2.7e-24 116.3 83 72.3
Lj9A348T62 Lonicera japonica HOM05D004488 ORTHO05D005374 3.0e-23 112.8 97 58.8
Actinidia30718 Actinidia chinensis HOM05D004488 ORTHO05D005374 6.8e-20 101.7 145 44.8
Haze_10521 Corylus avellana HOM05D004488 ORTHO05D005374 6.8e-20 101.7 68 72.1
CDE02G4257 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 4.9e-18 95.5 81 58.0
Cre09.g398845 Chlamydomonas reinhardtii HOM05D004488 ORTHO05D005374 3.3e-14 82.8 137 34.3
Thhalv10002778m.g Eutrema salsugineum HOM05D004488 ORTHO05D005374 4.3e-14 82.4 48 87.5
CAN.G755.11 Capsicum annuum HOM05D004488 ORTHO05D005374 6.8e-12 75.1 76 50.0
Gohir.A11G229600 Gossypium hirsutum HOM05D004488 ORTHO05D005374 3.2e-09 66.2 44 72.7
Ca_00165_v3 Cicer arietinum L. HOM05D004488 ORTHO05D005374 7.1e-09 65.1 46 63.0
SMO361G0062 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 8.7e-07 58.2 96 37.5
Gohir.A09G038265 Gossypium hirsutum HOM05D003588 ORTHO05D005374 3.3e-06 56.2 44 70.5


User provided reference genes

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