Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung02160 Brassica carinata HOM05D003722 ORTHO05D004589 0.0e+00 1366.3 990 100.0
BolC7t46400H Brassica oleracea HOM05D003722 ORTHO05D004589 0.0e+00 1347.8 980 100.0
BraA03t15228Z Brassica rapa HOM05D003722 ORTHO05D004589 0.0e+00 1297.0 992 94.9
Sp7g30950 Schrenkiella parvula HOM05D003722 ORTHO05D004589 0.0e+00 1170.2 1008 88.6
AT4G33210 Arabidopsis thaliana HOM05D003722 ORTHO05D004589 0.0e+00 1118.6 1001 85.6
BcaC09g52132 Brassica carinata HOM05D003722 ORTHO05D004589 0.0e+00 1117.8 1012 87.3
AL7G18350 Arabidopsis lyrata HOM05D003722 ORTHO05D004589 0.0e+00 1102.0 1001 86.6
Thhalv10024312m.g Eutrema salsugineum HOM05D003722 ORTHO05D004589 0.0e+00 1100.1 1006 86.9
Carub.0007s0725 Capsella rubella HOM05D003722 ORTHO05D004589 0.0e+00 1096.3 1001 84.6
C01p05420 Brassica napus HOM05D003722 ORTHO05D004589 0.0e+00 1083.6 1004 86.3
A01p04970 Brassica napus HOM05D003722 ORTHO05D004589 0.0e+00 1081.6 991 87.4
BolC1t00522H Brassica oleracea HOM05D003722 ORTHO05D004589 0.0e+00 1080.1 1009 85.7
BraA01t00479Z Brassica rapa HOM05D003722 ORTHO05D004589 0.0e+00 1078.2 988 87.3
CARHR241240 Cardamine hirsuta HOM05D003722 ORTHO05D004589 1.6e-308 1062.8 1002 83.6
Aa31sc290G30 Aethionema arabicum HOM05D003722 ORTHO05D004589 1.8e-294 1016.1 1016 80.1
THA.LOC104803705 Tarenaya hassleriana HOM05D003722 ORTHO05D004589 1.4e-251 873.6 1013 69.7
BcaB03g12811 Brassica carinata HOM05D003722 ORTHO05D004589 4.7e-239 832.0 883 74.7
BolC3t20974H Brassica oleracea HOM05D003722 ORTHO05D004589 1.5e-237 827.0 929 72.1
A08p17750 Brassica napus HOM05D003722 ORTHO05D004589 1.7e-233 813.5 924 70.9
C03p86790 Brassica napus HOM05D003722 ORTHO05D004589 1.7e-233 813.5 880 72.6
BraA08t33724Z Brassica rapa HOM05D003722 ORTHO05D004589 2.5e-232 809.7 882 73.2
C03p86800 Brassica napus HOM05D003722 ORTHO05D004589 7.3e-232 808.1 929 71.4
BcaC01g01002 Brassica carinata HOM05D003722 ORTHO05D004589 2.1e-231 806.6 880 72.6
BolC3t20973H Brassica oleracea HOM05D003722 ORTHO05D004589 2.1e-231 806.6 880 72.6
BraA08t33725Z Brassica rapa HOM05D003722 ORTHO05D004589 2.4e-230 803.1 924 70.8
A08p17740 Brassica napus HOM05D003722 ORTHO05D004589 2.5e-216 756.5 881 71.3
Manes.16G085600 Manihot esculenta HOM05D003722 ORTHO05D004589 2.7e-210 736.5 1036 63.6
Potri.018G048700 Populus trichocarpa HOM05D003722 ORTHO05D004589 1.8e-209 733.8 1030 59.8
Manes.03G053433 Manihot esculenta HOM05D003722 ORTHO05D004589 3.3e-208 729.6 1037 63.5
COL.COLO4_21138 Corchorus olitorius HOM05D003722 ORTHO05D004589 5.3e-206 722.2 1021 64.7
Potri.006G220900 Populus trichocarpa HOM05D003722 ORTHO05D004589 1.5e-205 720.7 1036 62.2
Prupe.1G404200 Prunus persica HOM05D003722 ORTHO05D004589 3.4e-205 719.5 1019 58.8
Sabra18G0046400 Salix brachista HOM05D003722 ORTHO05D004589 1.0e-204 718.0 977 61.4
Gorai.001G020200 Gossypium raimondii HOM05D003722 ORTHO05D004589 1.7e-204 717.2 1026 65.2
Ciclev10007327m.g Citrus clementina HOM05D003722 ORTHO05D004589 4.9e-204 715.7 910 70.8
MD15G1049900 Malus domestica HOM05D003722 ORTHO05D004589 3.2e-203 713.0 1013 60.6
Gohir.D07G019500 Gossypium hirsutum HOM05D003722 ORTHO05D004589 4.6e-202 709.1 1026 64.2
Thecc.09G063300 Theobroma cacao HOM05D003722 ORTHO05D004589 6.7e-201 705.3 1014 65.1
Gohir.A07G019700 Gossypium hirsutum HOM05D003722 ORTHO05D004589 7.4e-200 701.8 1029 63.4
FvH4_2g30970 Fragaria vesca HOM05D003722 ORTHO05D004589 9.0e-198 694.9 1012 62.6
FAN24G1820 Fragaria x ananassa HOM05D003722 ORTHO05D004589 1.5e-197 694.1 1012 62.6
MD08G1071300 Malus domestica HOM05D003722 ORTHO05D004589 3.4e-197 693.0 1012 61.7
FAN27G2597 Fragaria x ananassa HOM05D003722 ORTHO05D004589 4.5e-197 692.6 1017 54.1
TWI32G0253 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 1.4e-195 687.6 909 65.9
RcHm_v2.0_Chr6g0311801 Rosa chinensis HOM05D003722 ORTHO05D004589 1.9e-195 687.2 1016 57.0
FAN20G0071 Fragaria x ananassa HOM05D003722 ORTHO05D004589 4.2e-195 686.0 1006 62.3
Haze_18293 Corylus avellana HOM05D003722 ORTHO05D004589 9.3e-195 684.9 1032 60.9
Duzib187G0791 Durio zibethinus HOM05D003722 ORTHO05D004589 9.3e-195 684.9 1022 62.9
QL02p017002 Quercus lobata HOM05D003722 ORTHO05D004589 1.2e-194 684.5 910 68.6
TWI34G0168 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 4.6e-194 682.6 910 68.0
CsaV3_4G036040 Cucumis sativus L. HOM05D003722 ORTHO05D004589 1.3e-193 681.0 1015 61.4
Lj5g0007526 Lotus japonicus HOM05D003722 ORTHO05D004589 2.3e-193 680.2 914 68.4
CSS0013734 Camellia sinensis var. sinensis HOM05D003722 ORTHO05D004589 8.7e-193 678.3 887 69.1
VMungo0647G1341 Vigna mungo HOM05D003722 ORTHO05D004589 3.7e-191 672.9 994 62.3
ClCG05G015740 Citrullus lanatus HOM05D003722 ORTHO05D004589 5.3e-190 669.1 1038 61.4
Hma1.2p1_0836F.1_g225970 Hydrangea macrophylla HOM05D003722 ORTHO05D004589 5.9e-189 665.6 997 62.6
Sabra06G0170700 Salix brachista HOM05D003722 ORTHO05D004589 1.0e-188 664.8 1098 56.3
Glyma.06G055800 Glycine max HOM05D003722 ORTHO05D004589 2.2e-188 663.7 903 65.7
Nitab4.5_0000446g0200 Nicotiana tabacum HOM05D003722 ORTHO05D004589 2.9e-188 663.3 1001 56.9
GSVIVG01035469001 Vitis vinifera HOM05D003722 ORTHO05D004589 8.5e-188 661.8 909 61.6
Dinv02138 Davidia involucrata HOM05D003722 ORTHO05D004589 1.4e-187 661.0 942 57.5
Lalb_Chr22g0356231 Lupinus albus HOM05D003722 ORTHO05D004589 1.4e-187 661.0 882 69.5
arahy.Tifrunner.gnm1.ann1.JX1TK4 Arachis hypogaea HOM05D003722 ORTHO05D004589 2.5e-187 660.2 911 66.0
Medtr1g015450 Medicago truncatula HOM05D003722 ORTHO05D004589 5.5e-187 659.1 907 65.6
Phvul.001G038700 Phaseolus vulgaris HOM05D003722 ORTHO05D004589 5.5e-187 659.1 993 63.2
Ca_13110_v3 Cicer arietinum L. HOM05D003722 ORTHO05D004589 9.4e-187 658.3 926 66.3
Glyma.14G098900 Glycine max HOM05D003722 ORTHO05D004589 1.2e-186 657.9 908 67.1
Nn6g35614 Nelumbo nucifera HOM05D003722 ORTHO05D004589 2.5e-184 650.2 964 64.1
Eucgr.C03158 Eucalyptus grandis HOM05D003722 ORTHO05D004589 4.3e-184 649.4 893 66.5
Glyma.17G225800 Glycine max HOM05D003722 ORTHO05D004589 4.3e-184 649.4 813 72.6
CANSAT25G1471 Cannabis sativa HOM05D003722 ORTHO05D004589 5.7e-184 649.0 887 67.4
Duzib168G1968 Durio zibethinus HOM05D003722 ORTHO05D004589 3.7e-183 646.4 1030 56.4
Lsat_1_v5_gn_8_70661 Lactuca sativa HOM05D003722 ORTHO05D004589 6.3e-183 645.6 997 58.4
CiPaw.15G091900 Carya illinoinensis HOM05D003722 ORTHO05D004589 1.1e-182 644.8 1009 57.0
Atru.chr7.1848 Acer truncatum HOM05D003722 ORTHO05D004589 5.3e-182 642.5 773 72.4
Phvul.009G081900 Phaseolus vulgaris HOM05D003722 ORTHO05D004589 5.3e-182 642.5 885 65.5
Dinv41842 Davidia involucrata HOM05D003722 ORTHO05D004589 9.1e-182 641.7 1027 60.7
Migut.E01781 Erythranthe guttata HOM05D003722 ORTHO05D004589 9.1e-182 641.7 827 69.6
PSO724G0454 Papaver somniferum HOM05D003722 ORTHO05D004589 2.0e-181 640.6 897 65.4
Glyma.04G055700 Glycine max HOM05D003722 ORTHO05D004589 4.5e-181 639.4 904 64.6
Oeu036060.1 Olea europaea HOM05D003722 ORTHO05D004589 4.5e-181 639.4 809 67.7
Sc23g0004200 Simmondsia chinensis HOM05D003722 ORTHO05D004589 1.0e-180 638.3 996 60.1
DCAR_001223 Daucus carota HOM05D003722 ORTHO05D004589 1.7e-180 637.5 903 69.1
HanXRQChr09g0261801 Helianthus annuus HOM05D003722 ORTHO05D004589 1.7e-180 637.5 985 53.0
Sed0027838 Sechium edule HOM05D003722 ORTHO05D004589 1.7e-180 637.5 856 69.3
TAR624G1180 Trochodendron aralioides HOM05D003722 ORTHO05D004589 1.7e-180 637.5 890 63.5
Rhsim03G0063100 Rhododendron simsii HOM05D003722 ORTHO05D004589 1.9e-179 634.0 907 64.6
PSO135G0299 Papaver somniferum HOM05D003722 ORTHO05D004589 4.2e-179 632.9 899 63.8
TPR.G38933 Trifolium pratense HOM05D003722 ORTHO05D004589 9.4e-179 631.7 910 63.6
PGR044G0665 Punica granatum HOM05D003722 ORTHO05D004589 1.2e-178 631.3 914 65.6
TAR636G3697 Trochodendron aralioides HOM05D003722 ORTHO05D004589 3.6e-178 629.8 892 57.5
Nitab4.5_0002831g0060 Nicotiana tabacum HOM05D003722 ORTHO05D004589 4.7e-178 629.4 1005 57.6
Peaxi162Scf00486g01029 Petunia axillaris HOM05D003722 ORTHO05D004589 4.7e-178 629.4 813 65.6
DCAR_004379 Daucus carota HOM05D003722 ORTHO05D004589 6.1e-178 629.0 903 66.9
TAR626G0360 Trochodendron aralioides HOM05D003722 ORTHO05D004589 8.8e-177 625.2 887 66.4
TAR626G0824 Trochodendron aralioides HOM05D003722 ORTHO05D004589 1.5e-176 624.4 887 66.4
Gohir.D06G083100 Gossypium hirsutum HOM05D003722 ORTHO05D004589 2.8e-175 620.2 885 65.9
arahy.Tifrunner.gnm1.ann1.G8USHK Arachis hypogaea HOM05D003722 ORTHO05D004589 3.7e-175 619.8 833 67.7
HanXRQChr03g0065591 Helianthus annuus HOM05D003722 ORTHO05D004589 1.4e-174 617.8 807 70.5
Nn8g38669 Nelumbo nucifera HOM05D003722 ORTHO05D004589 1.8e-174 617.5 893 67.6
Lalb_Chr08g0244821 Lupinus albus HOM05D003722 ORTHO05D004589 3.1e-174 616.7 923 62.3
MSTRG.25985 Avicennia marina HOM05D003722 ORTHO05D004589 4.1e-174 616.3 888 65.9
AUR62009080 Chenopodium quinoa HOM05D003722 ORTHO05D004589 4.1e-174 616.3 905 63.5
ATR0598G202 Amborella trichopoda HOM05D003722 ORTHO05D004589 9.1e-174 615.1 865 66.0
Migut.A00079 Erythranthe guttata HOM05D003722 ORTHO05D004589 1.2e-173 614.8 901 65.5
Sopen08g017250 Solanum pennellii HOM05D003722 ORTHO05D004589 1.6e-173 614.4 1012 55.7
CSS0048906 Camellia sinensis var. sinensis HOM05D003722 ORTHO05D004589 2.0e-173 614.0 811 68.3
Aqoxy7G04082 Aquilegia oxysepala HOM05D003722 ORTHO05D004589 3.8e-172 609.8 878 64.2
Solyc08g061820.3 Solanum lycopersicum HOM05D003722 ORTHO05D004589 6.5e-172 609.0 1000 56.1
AUR62020586 Chenopodium quinoa HOM05D003722 ORTHO05D004589 8.5e-172 608.6 878 66.9
Sed0000287 Sechium edule HOM05D003722 ORTHO05D004589 4.2e-171 606.3 934 60.1
HanXRQChr05g0135941 Helianthus annuus HOM05D003722 ORTHO05D004589 5.5e-171 605.9 984 56.1
Lalb_Chr23g0267971 Lupinus albus HOM05D003722 ORTHO05D004589 5.5e-171 605.9 899 57.1
VMungo1309G1038 Vigna mungo HOM05D003722 ORTHO05D004589 5.5e-171 605.9 877 65.6
PGSC0003DMG400018806 Solanum tuberosum HOM05D003722 ORTHO05D004589 7.2e-171 605.5 948 59.5
MBI19_g11832_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 3.6e-170 603.2 909 63.4
ECA236G0039 Erigeron canadensis HOM05D003722 ORTHO05D004589 8.0e-170 602.1 806 67.7
vmacro07490 Vaccinium macrocarpon HOM05D003722 ORTHO05D004589 1.7e-167 594.3 1024 55.2
EL10Ac2g03782 Beta vulgaris HOM05D003722 ORTHO05D004589 3.7e-167 593.2 930 60.1
SGA_v2.0_scaffold163G37999 Striga asiatica HOM05D003722 ORTHO05D004589 8.2e-167 592.0 817 68.5
Actinidia27552 Actinidia chinensis HOM05D003722 ORTHO05D004589 1.2e-165 588.2 1011 58.6
SGA_v2.0_scaffold64G21877 Striga asiatica HOM05D003722 ORTHO05D004589 1.6e-165 587.8 801 69.3
SalBow4G2891 Salvia bowleyana HOM05D003722 ORTHO05D004589 1.9e-163 580.9 884 63.3
arahy.Tifrunner.gnm1.ann1.V7LPDI Arachis hypogaea HOM05D003722 ORTHO05D004589 5.5e-163 579.3 814 66.7
CAN.G881.1 Capsicum annuum HOM05D003722 ORTHO05D004589 7.2e-163 578.9 876 59.6
arahy.Tifrunner.gnm1.ann1.V9GZ7C Arachis hypogaea HOM05D003722 ORTHO05D004589 4.0e-161 573.2 814 68.7
MELO3C016912.2 Cucumis melo HOM05D003722 ORTHO05D004589 2.4e-158 563.9 875 52.1
SGA_v2.0_scaffold169G38713 Striga asiatica HOM05D003722 ORTHO05D004589 1.6e-157 561.2 812 64.9
Gorai.010G096600 Gossypium raimondii HOM05D003722 ORTHO05D004589 2.0e-157 560.8 844 58.1
Lj7A221G29 Lonicera japonica HOM05D003722 ORTHO05D004589 1.6e-154 551.2 909 53.2
CiPaw.16G068500 Carya illinoinensis HOM05D003722 ORTHO05D004589 9.5e-147 525.4 838 63.4
SEGI_30451 Sequoiadendron giganteum HOM05D003722 ORTHO05D004589 2.8e-146 523.9 970 55.5
Psat6g022880 Pisum sativum HOM05D003722 ORTHO05D004589 1.3e-143 515.0 992 51.0
Hund19422 Selenicereus undatus HOM05D003722 ORTHO05D004589 2.4e-142 510.8 957 51.2
TWI39G1239 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 1.5e-139 501.5 740 60.9
Cpa.g.sc126.25 Carica papaya HOM05D003722 ORTHO05D004589 9.5e-139 498.8 685 75.6
HPP92_006154 Vanilla planifolia HOM05D003722 ORTHO05D004589 1.3e-135 488.4 885 56.6
unitig_748.g8237 Utricularia gibba HOM05D003722 ORTHO05D004589 1.1e-134 485.3 897 59.2
Medtr1g015480 Medicago truncatula HOM05D003722 ORTHO05D004589 1.2e-133 481.9 786 59.9
Gohir.A06G081600 Gossypium hirsutum HOM05D003722 ORTHO05D004589 3.3e-131 473.8 684 64.6
SEGI_01273 Sequoiadendron giganteum HOM05D003722 ORTHO05D004589 1.6e-130 471.5 819 60.2
unitig_4.g30332 Utricularia gibba HOM05D003722 ORTHO05D004589 2.3e-124 451.1 779 47.8
CDE07G1686 Ceratophyllum demersum HOM05D003722 ORTHO05D004589 7.1e-118 429.5 726 59.4
Mapoly0202s0013 Marchantia polymorpha HOM05D003722 ORTHO05D004589 2.7e-117 427.6 908 50.1
Pp3c12_17410 Physcomitrium patens HOM05D003722 ORTHO05D004589 1.9e-115 421.4 852 46.9
Pp3c5_23900 Physcomitrium patens HOM05D003722 ORTHO05D004589 1.1e-107 395.6 909 46.6
Actinidia25690 Actinidia chinensis HOM05D003722 ORTHO05D004589 3.1e-105 387.5 649 71.8
Pp3c4_12360 Physcomitrium patens HOM05D003722 ORTHO05D004589 1.1e-102 379.0 852 53.9
SMO238G0031 Selaginella moellendorffii HOM05D003722 ORTHO05D004589 1.2e-101 375.6 796 50.0
MBI13_g31962_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 1.7e-95 355.1 674 55.8
Pp3c6_6070 Physcomitrium patens HOM05D003722 ORTHO05D004589 1.3e-92 345.5 999 42.9
Oeu022303.1 Olea europaea HOM05D003722 ORTHO05D004589 1.5e-91 342.0 904 33.6
CBR_g11995 Chara braunii HOM05D003722 ORTHO05D004589 1.5e-88 332.0 952 46.6
SalBow1G2799 Salvia bowleyana HOM05D003722 ORTHO05D004589 4.9e-87 327.0 644 69.6
Cc08_g01170 Coffea canephora HOM05D003722 ORTHO05D004589 5.5e-86 323.6 530 57.5
Zm00001eb048660 Zea mays HOM05D003722 ORTHO05D004589 1.1e-81 309.3 442 49.5
Sc09g0010110 Simmondsia chinensis HOM05D003722 ORTHO05D004589 5.9e-80 303.5 748 48.0
MBI13_g13882_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 1.9e-78 298.5 394 55.8
SHI18847 Sapria himalayana HOM05D000105 ORTHO05D000023 5.1e-76 290.4 1298 28.9
Os10g0396400 Oryza sativa ssp. japonica HOM05D003722 ORTHO05D004589 1.6e-74 285.4 646 54.5
AagrBONN_evm.TU.Sc2ySwM_117.2463 Anthoceros agrestis HOM05D003722 ORTHO05D004589 1.8e-73 282.0 617 58.8
Cc08_g01160 Coffea canephora HOM05D003722 ORTHO05D004589 4.4e-67 260.8 261 63.6
Zm00001eb223490 Zea mays HOM05D003722 ORTHO05D004589 2.8e-66 258.1 484 43.8
Ah.11g044300 Amaranthus hybridus HOM05D003722 ORTHO05D004589 1.2e-51 209.5 221 52.0
Psat3g079480 Pisum sativum HOM05D003722 ORTHO05D004589 4.5e-48 197.6 137 70.1
Oeu028128.1 Olea europaea HOM05D003722 ORTHO05D004589 1.3e-47 196.1 311 70.4
Actinidia25691 Actinidia chinensis HOM05D003722 ORTHO05D004589 1.7e-42 179.1 323 39.0
Gohir.A06G081780 Gossypium hirsutum HOM05D003722 ORTHO05D004589 3.5e-40 171.4 197 51.8
VMungo0720G2633 Vigna mungo HOM05D003722 ORTHO05D004589 5.0e-31 141.0 88 78.4
Cpa.g.sc126.26 Carica papaya HOM05D003722 ORTHO05D004589 2.3e-28 132.1 123 57.7
Psat5g213240 Pisum sativum HOM05D003722 ORTHO05D004589 8.9e-28 130.2 71 83.1
VMungo0251G0605 Vigna mungo HOM05D003722 ORTHO05D001926 7.5e-27 127.1 119 56.3
BcaC01g01003 Brassica carinata HOM05D003722 ORTHO05D004589 9.8e-19 100.1 143 54.5
C01p05870 Brassica napus HOM05D000903 ORTHO05D000731 2.4e-17 95.5 161 46.0
SalBow1G8614 Salvia bowleyana HOM05D003722 ORTHO05D050768 4.3e-14 84.7 228 79.8
Psat5g114640 Pisum sativum HOM05D003722 ORTHO05D004589 1.8e-12 79.3 189 32.3
Mapoly0101s0054 Marchantia polymorpha HOM05D003722 ORTHO05D004589 1.2e-11 76.6 62 56.5
ECA236G4568 Erigeron canadensis HOM05D000007 ORTHO05D000039 3.4e-11 75.1 168 33.9


User provided reference genes

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