Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung02151 Brassica carinata HOM05D006192 ORTHO05D008003 3.3e-251 871.3 458 100.0
C07p59470 Brassica napus HOM05D006192 ORTHO05D008003 2.9e-247 858.2 481 95.2
BraA03t15213Z Brassica rapa HOM05D006192 ORTHO05D008003 2.9e-239 831.6 481 90.2
A03p61760 Brassica napus HOM05D006192 ORTHO05D008003 8.3e-239 830.1 481 92.3
BolC7t46390H Brassica oleracea HOM05D006192 ORTHO05D008003 2.3e-236 822.0 481 92.3
C01p05650 Brassica napus HOM05D006192 ORTHO05D008003 7.3e-227 790.4 478 83.9
BolC1t00544H Brassica oleracea HOM05D006192 ORTHO05D008003 7.3e-227 790.4 478 83.9
BcaC09g52100 Brassica carinata HOM05D006192 ORTHO05D008003 1.6e-226 789.3 478 86.8
Thhalv10025085m.g Eutrema salsugineum HOM05D006192 ORTHO05D008003 5.2e-225 784.3 479 83.3
CARHR241040 Cardamine hirsuta HOM05D006192 ORTHO05D008003 6.8e-225 783.9 478 82.8
AL7G18640 Arabidopsis lyrata HOM05D006192 ORTHO05D008003 7.6e-224 780.4 478 83.9
Sp7g30790 Schrenkiella parvula HOM05D006192 ORTHO05D008003 7.6e-224 780.4 478 83.5
AT4G33030 Arabidopsis thaliana HOM05D006192 ORTHO05D008003 8.4e-223 776.9 479 83.3
BraA01t00499Z Brassica rapa HOM05D006192 ORTHO05D008003 2.1e-221 772.3 478 88.3
A01p05160 Brassica napus HOM05D006192 ORTHO05D008003 1.3e-220 769.6 478 87.9
Carub.0007s0745 Capsella rubella HOM05D006192 ORTHO05D008003 4.7e-218 761.1 478 82.4
THA.LOC104818573 Tarenaya hassleriana HOM05D006192 ORTHO05D008003 2.5e-203 712.2 482 75.3
Aa31LG4G11110 Aethionema arabicum HOM05D006192 ORTHO05D008003 4.3e-203 711.4 481 81.5
Lj7A269G19 Lonicera japonica HOM05D006192 ORTHO05D008003 1.2e-197 693.3 482 72.6
Dinv27994 Davidia involucrata HOM05D006192 ORTHO05D008003 2.5e-195 685.6 481 72.3
CSS0041370 Camellia sinensis var. sinensis HOM05D006192 ORTHO05D008003 5.6e-195 684.5 482 71.8
Actinidia30319 Actinidia chinensis HOM05D006192 ORTHO05D008003 7.4e-195 684.1 481 72.3
Manes.03G048700 Manihot esculenta HOM05D006192 ORTHO05D008003 2.1e-194 682.6 483 72.0
TWI34G1683 Tripterygium wilfordii HOM05D006192 ORTHO05D008003 2.8e-194 682.2 482 71.8
Dinv22891 Davidia involucrata HOM05D006192 ORTHO05D008003 3.7e-194 681.8 483 72.5
Eucgr.C00658 Eucalyptus grandis HOM05D006192 ORTHO05D008003 8.1e-194 680.6 394 82.5
Glyma.03G131100 Glycine max HOM05D006192 ORTHO05D008003 8.1e-194 680.6 482 71.0
Potri.006G228000 Populus trichocarpa HOM05D006192 ORTHO05D008003 8.1e-194 680.6 482 71.6
Duzib187G0943 Durio zibethinus HOM05D006192 ORTHO05D008003 1.4e-193 679.9 484 71.7
Oeu003988.1 Olea europaea HOM05D006192 ORTHO05D008003 1.8e-193 679.5 484 71.7
AUR62009135 Chenopodium quinoa HOM05D006192 ORTHO05D008003 2.4e-193 679.1 480 72.1
Cfa017964 Carpinus fangiana HOM05D006192 ORTHO05D008003 3.1e-193 678.7 487 71.7
Haze_18173 Corylus avellana HOM05D006192 ORTHO05D008003 3.1e-193 678.7 488 71.9
Gohir.A05G041700 Gossypium hirsutum HOM05D006192 ORTHO05D008003 3.1e-193 678.7 394 83.5
Gorai.009G044500 Gossypium raimondii HOM05D006192 ORTHO05D008003 3.1e-193 678.7 394 83.2
Ciclev10008149m.g Citrus clementina HOM05D006192 ORTHO05D008003 4.0e-193 678.3 395 82.5
Ca_08416_v3 Cicer arietinum L. HOM05D006192 ORTHO05D008003 5.3e-193 677.9 480 70.8
MELO3C016873.2 Cucumis melo HOM05D006192 ORTHO05D008003 5.3e-193 677.9 483 72.0
Os05g0387200 Oryza sativa ssp. japonica HOM05D006192 ORTHO05D008003 5.3e-193 677.9 397 83.1
COL.COLO4_21071 Corchorus olitorius HOM05D006192 ORTHO05D008003 9.0e-193 677.2 488 71.7
Nitab4.5_0002829g0050 Nicotiana tabacum HOM05D006192 ORTHO05D008003 9.0e-193 677.2 484 71.9
PSO339G5117 Papaver somniferum HOM05D006192 ORTHO05D008003 9.0e-193 677.2 394 83.2
PSO384G1492 Papaver somniferum HOM05D006192 ORTHO05D008003 9.0e-193 677.2 393 83.5
CsaV3_4G035660 Cucumis sativus L. HOM05D006192 ORTHO05D008003 1.2e-192 676.8 483 71.6
Gohir.D05G043400 Gossypium hirsutum HOM05D006192 ORTHO05D008003 1.2e-192 676.8 494 70.0
Rhsim07G0125300 Rhododendron simsii HOM05D006192 ORTHO05D008003 1.5e-192 676.4 394 83.5
arahy.Tifrunner.gnm1.ann1.S5W95P Arachis hypogaea HOM05D006192 ORTHO05D008003 2.0e-192 676.0 480 71.0
AUR62039119 Chenopodium quinoa HOM05D006192 ORTHO05D008003 2.0e-192 676.0 480 72.1
AUR62043945 Chenopodium quinoa HOM05D006192 ORTHO05D008003 2.0e-192 676.0 480 72.1
Nitab4.5_0005436g0010 Nicotiana tabacum HOM05D006192 ORTHO05D008003 2.0e-192 676.0 485 72.4
Sopen08g018650 Solanum pennellii HOM05D006192 ORTHO05D008003 2.0e-192 676.0 483 72.5
FAN15G2167 Fragaria x ananassa HOM05D006192 ORTHO05D008003 2.6e-192 675.6 397 82.1
PGR031G3391 Punica granatum HOM05D006192 ORTHO05D008003 2.6e-192 675.6 394 82.0
Glyma.19G133100 Glycine max HOM05D006192 ORTHO05D008003 3.4e-192 675.2 480 71.0
FAN27G0797 Fragaria x ananassa HOM05D006192 ORTHO05D008003 4.5e-192 674.9 482 71.4
FAN20G2998 Fragaria x ananassa HOM05D006192 ORTHO05D008003 5.8e-192 674.5 397 81.9
MD15G1058400 Malus domestica HOM05D006192 ORTHO05D008003 7.6e-192 674.1 394 82.7
Hund19447 Selenicereus undatus HOM05D006192 ORTHO05D008003 7.6e-192 674.1 478 72.8
Sc01g0008030 Simmondsia chinensis HOM05D006192 ORTHO05D008003 7.6e-192 674.1 481 70.7
PGSC0003DMG400019063 Solanum tuberosum HOM05D006192 ORTHO05D008003 7.6e-192 674.1 484 71.7
ClCG05G017890 Citrullus lanatus HOM05D006192 ORTHO05D008003 1.3e-191 673.3 483 71.4
FAN24G0058 Fragaria x ananassa HOM05D006192 ORTHO05D008003 1.3e-191 673.3 483 71.6
Lalb_Chr20g0110241 Lupinus albus HOM05D006192 ORTHO05D008003 1.3e-191 673.3 478 71.5
Peaxi162Scf00327g00612 Petunia axillaris HOM05D006192 ORTHO05D008003 1.3e-191 673.3 487 72.1
Ah.11g044810 Amaranthus hybridus HOM05D006192 ORTHO05D008003 2.2e-191 672.5 482 72.0
FvH4_2g31750 Fragaria vesca HOM05D006192 ORTHO05D008003 2.9e-191 672.2 483 71.2
Prupe.1G411000 Prunus persica HOM05D006192 ORTHO05D008003 2.9e-191 672.2 394 81.7
RcHm_v2.0_Chr6g0311071 Rosa chinensis HOM05D006192 ORTHO05D008003 2.9e-191 672.2 483 71.2
arahy.Tifrunner.gnm1.ann1.44XN4P Arachis hypogaea HOM05D006192 ORTHO05D008003 3.8e-191 671.8 480 70.8
SalBow4G2073 Salvia bowleyana HOM05D006192 ORTHO05D008003 3.8e-191 671.8 394 82.7
Sed0014899 Sechium edule HOM05D006192 ORTHO05D008003 4.9e-191 671.4 483 70.8
HanXRQChr06g0173891 Helianthus annuus HOM05D006192 ORTHO05D008003 6.5e-191 671.0 482 71.4
Solyc08g063080.3 Solanum lycopersicum HOM05D006192 ORTHO05D008003 1.4e-190 669.8 482 71.6
Oeu009349.1 Olea europaea HOM05D006192 ORTHO05D008003 1.9e-190 669.5 488 70.1
Nn7g37295 Nelumbo nucifera HOM05D006192 ORTHO05D008003 5.5e-190 667.9 487 70.4
VMungo1383G3565 Vigna mungo HOM05D006192 ORTHO05D008003 7.1e-190 667.5 480 70.4
MBI16_g06012_MAGBIO Magnolia biondii HOM05D006192 ORTHO05D008003 9.3e-190 667.2 394 81.5
Medtr7g090510 Medicago truncatula HOM05D006192 ORTHO05D008003 9.3e-190 667.2 480 69.6
ECA246G2418 Erigeron canadensis HOM05D006192 ORTHO05D008003 1.2e-189 666.8 485 70.5
SalBow5G1678 Salvia bowleyana HOM05D006192 ORTHO05D008003 1.2e-189 666.8 394 82.2
Migut.A00129 Erythranthe guttata HOM05D006192 ORTHO05D008003 2.1e-189 666.0 485 70.1
TPR.G32742 Trifolium pratense HOM05D006192 ORTHO05D008003 2.1e-189 666.0 481 69.6
Lsat_1_v5_gn_3_23900 Lactuca sativa HOM05D006192 ORTHO05D008003 2.7e-189 665.6 482 69.7
Thecc.09G055000 Theobroma cacao HOM05D006192 ORTHO05D008003 2.7e-189 665.6 488 69.9
QL02p001073 Quercus lobata HOM05D006192 ORTHO05D008003 3.5e-189 665.2 486 70.8
CAN.G9.23 Capsicum annuum HOM05D006192 ORTHO05D008003 4.6e-189 664.8 484 70.9
DCAR_000802 Daucus carota HOM05D006192 ORTHO05D008003 6.0e-189 664.5 482 69.1
Cc08_g10700 Coffea canephora HOM05D006192 ORTHO05D008003 1.0e-188 663.7 483 69.4
Lj1g0026013 Lotus japonicus HOM05D006192 ORTHO05D008003 1.3e-188 663.3 480 69.8
MSTRG.25952 Avicennia marina HOM05D006192 ORTHO05D008003 2.3e-188 662.5 394 81.2
Phvul.001G127100 Phaseolus vulgaris HOM05D006192 ORTHO05D008003 2.3e-188 662.5 480 69.8
CiPaw.15G038100 Carya illinoinensis HOM05D006192 ORTHO05D008003 3.0e-188 662.1 490 69.0
Psat3g076360 Pisum sativum HOM05D006192 ORTHO05D008003 3.0e-188 662.1 481 69.2
CANSAT25G1130 Cannabis sativa HOM05D006192 ORTHO05D008003 1.5e-187 659.8 394 80.7
SGA_v2.0_scaffold20G09220 Striga asiatica HOM05D006192 ORTHO05D008003 4.3e-187 658.3 392 80.1
EL10Ac2g03859 Beta vulgaris HOM05D006192 ORTHO05D008003 5.7e-187 657.9 480 69.8
Zm00001eb347070 Zea mays HOM05D006192 ORTHO05D008003 7.4e-187 657.5 397 79.3
Sabra06G0176500 Salix brachista HOM05D006192 ORTHO05D008003 2.4e-185 652.5 513 66.5
ATR0307G063 Amborella trichopoda HOM05D006192 ORTHO05D008003 2.8e-178 629.0 393 78.1
Pp3c10_9630 Physcomitrium patens HOM05D006192 ORTHO05D008003 9.4e-174 614.0 393 73.8
HPP92_006663 Vanilla planifolia HOM05D006192 ORTHO05D008003 2.3e-172 609.4 357 81.8
AagrBONN_evm.TU.Sc2ySwM_368.1072 Anthoceros agrestis HOM05D006192 ORTHO05D008003 8.8e-172 607.4 391 74.4
Mapoly0010s0049 Marchantia polymorpha HOM05D006192 ORTHO05D008003 8.8e-172 607.4 396 73.5
GSVIVG01035394001 Vitis vinifera HOM05D006192 ORTHO05D008003 5.7e-171 604.7 396 75.3
SMO239G0161 Selaginella moellendorffii HOM05D006192 ORTHO05D008003 9.7e-171 604.0 398 73.4
CBR_g23789 Chara braunii HOM05D006192 ORTHO05D008003 9.1e-169 597.4 386 73.8
unitig_748.g7527 Utricularia gibba HOM05D006192 ORTHO05D008003 7.2e-166 587.8 368 77.4
Cre16.g656400 Chlamydomonas reinhardtii HOM05D006192 ORTHO05D008003 3.2e-158 562.4 390 68.7
MCO15G376 Micromonas commoda HOM05D006192 ORTHO05D008003 1.0e-151 540.8 378 66.4
PRCOL_00003517 Prasinoderma coloniale HOM05D006192 ORTHO05D008003 1.2e-147 527.3 392 63.0
TAR369G0638 Trochodendron aralioides HOM05D006192 ORTHO05D008003 3.4e-147 525.8 386 69.7
SalBow5G5187 Salvia bowleyana HOM05D006192 ORTHO05D008003 4.1e-145 518.8 344 75.3
Lj7A268T22 Lonicera japonica HOM05D006192 ORTHO05D008003 2.8e-133 479.6 286 82.5
Atru.chr7.1090 Acer truncatum HOM05D006192 ORTHO05D008003 2.3e-132 476.5 286 81.8
SEGI_22284 Sequoiadendron giganteum HOM05D006192 ORTHO05D008003 9.5e-118 427.9 268 75.7
CDE02G3162 Ceratophyllum demersum HOM05D006192 ORTHO05D008003 2.0e-115 420.2 254 76.8
CDE04G0209 Ceratophyllum demersum HOM05D006192 ORTHO05D008003 7.8e-96 355.1 187 85.0
SalBow8G2204 Salvia bowleyana HOM05D006192 ORTHO05D008003 6.9e-92 342.0 214 77.1
CDE04G3367 Ceratophyllum demersum HOM05D006192 ORTHO05D008003 3.9e-79 299.7 171 81.9
SalBow8G3463 Salvia bowleyana HOM05D006192 ORTHO05D008003 1.1e-65 255.0 173 71.1
MD08G1063500 Malus domestica HOM05D006192 ORTHO05D008003 9.1e-60 235.3 130 84.6
SalBow8G1594 Salvia bowleyana HOM05D006192 ORTHO05D008003 2.3e-55 220.7 130 82.3
SEGI_03729 Sequoiadendron giganteum HOM05D006192 ORTHO05D008003 1.5e-54 218.0 136 76.5
SalBow5G3520 Salvia bowleyana HOM05D000200 ORTHO05D000262 2.3e-47 194.1 140 73.6
SalBow4G3004 Salvia bowleyana HOM05D006192 ORTHO05D001699 3.2e-33 147.1 94 76.6
SalBow8G4783 Salvia bowleyana HOM05D006192 ORTHO05D358531 2.0e-30 137.9 105 65.7
Atru.chr7.1089 Acer truncatum HOM05D006192 ORTHO05D008003 7.0e-28 129.4 160 46.2
BcaC01g05298 Brassica carinata HOM05D006192 ORTHO05D091607 4.4e-14 83.6 59 69.5
HPP92_013398 Vanilla planifolia HOM05D000776 ORTHO05D001624 7.3e-09 66.2 128 31.2
Mapoly0068s0034 Marchantia polymorpha HOM05D000776 ORTHO05D001624 1.6e-08 65.1 278 26.3
Zm00001eb209990 Zea mays HOM05D001036 ORTHO05D001852 4.7e-08 63.5 263 22.1
Mapoly0065s0029 Marchantia polymorpha HOM05D000776 ORTHO05D001624 1.8e-07 61.6 279 23.7
Ciclev10020907m.g Citrus clementina HOM05D000776 ORTHO05D001624 4.0e-07 60.5 155 29.7
Migut.E01129 Erythranthe guttata HOM05D000776 ORTHO05D001624 2.0e-06 58.2 154 26.0
BraA06t24084Z Brassica rapa HOM05D000776 ORTHO05D008161 9.8e-06 55.8 165 24.8


User provided reference genes

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