Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung02148 Brassica carinata HOM05D005447 ORTHO05D006730 4.4e-144 514.6 260 100.0
C07p59440 Brassica napus HOM05D005447 ORTHO05D006730 3.0e-137 491.9 263 95.8
BolC7t46387H Brassica oleracea HOM05D005447 ORTHO05D006730 3.0e-137 491.9 263 95.8
A03p61720 Brassica napus HOM05D005447 ORTHO05D006730 2.9e-135 485.3 263 94.7
BraA03t15210Z Brassica rapa HOM05D005447 ORTHO05D006730 2.9e-135 485.3 263 94.3
Sp7g30740 Schrenkiella parvula HOM05D005447 ORTHO05D006730 4.9e-127 458.0 266 89.1
Thhalv10025994m.g Eutrema salsugineum HOM05D005447 ORTHO05D006730 1.6e-122 443.0 256 86.7
AL7G18730 Arabidopsis lyrata HOM05D005447 ORTHO05D006730 5.2e-121 438.0 256 85.5
Carub.0007s0752 Capsella rubella HOM05D005447 ORTHO05D006730 2.6e-120 435.6 261 84.3
CARHR240980 Cardamine hirsuta HOM05D005447 ORTHO05D006730 2.6e-120 435.6 253 85.4
AT4G32960 Arabidopsis thaliana HOM05D005447 ORTHO05D006730 1.3e-119 433.3 256 84.8
Aa31sc248G10 Aethionema arabicum HOM05D005447 ORTHO05D006730 1.2e-117 426.8 263 79.8
THA.LOC104803734 Tarenaya hassleriana HOM05D005447 ORTHO05D006730 7.3e-107 391.0 256 75.4
Cpa.g.sc7.194 Carica papaya HOM05D005447 ORTHO05D006730 4.6e-101 371.7 242 72.7
Cfa017935 Carpinus fangiana HOM05D005447 ORTHO05D006730 2.8e-98 362.5 245 71.0
Manes.16G078100 Manihot esculenta HOM05D005447 ORTHO05D006730 1.2e-96 357.1 244 70.1
Dinv27967 Davidia involucrata HOM05D005447 ORTHO05D006730 4.9e-95 351.7 254 65.7
CARHR240970 Cardamine hirsuta HOM05D005447 ORTHO05D006730 8.4e-95 350.9 242 74.4
TWI34G1470 Tripterygium wilfordii HOM05D005447 ORTHO05D006730 1.4e-94 350.1 240 70.4
Sed0025565 Sechium edule HOM05D005447 ORTHO05D006730 1.9e-94 349.7 242 68.6
Eucgr.C03005 Eucalyptus grandis HOM05D005447 ORTHO05D006730 2.4e-94 349.4 254 66.5
Ciclev10009241m.g Citrus clementina HOM05D005447 ORTHO05D006730 9.3e-94 347.4 242 66.5
Lj1g0020487 Lotus japonicus HOM05D005447 ORTHO05D006730 9.3e-94 347.4 244 68.0
Prupe.1G414700 Prunus persica HOM05D005447 ORTHO05D006730 1.6e-93 346.7 246 68.7
CiPaw.16G030000 Carya illinoinensis HOM05D005447 ORTHO05D006730 3.5e-93 345.5 244 68.9
QL02p001555 Quercus lobata HOM05D005447 ORTHO05D006730 6.0e-93 344.7 242 67.8
Lalb_Chr08g0245101 Lupinus albus HOM05D005447 ORTHO05D006730 7.9e-93 344.4 246 67.9
Actinidia30302 Actinidia chinensis HOM05D005447 ORTHO05D006730 1.3e-92 343.6 250 68.0
Nitab4.5_0000738g0170 Nicotiana tabacum HOM05D005447 ORTHO05D006730 2.3e-92 342.8 248 68.1
Ca_15869_v3 Cicer arietinum L. HOM05D005447 ORTHO05D006730 3.0e-92 342.4 254 65.7
CSS0008615 Camellia sinensis var. sinensis HOM05D005447 ORTHO05D006730 3.9e-92 342.0 240 67.5
Gorai.009G046500 Gossypium raimondii HOM05D005447 ORTHO05D006730 3.9e-92 342.0 246 69.9
Atru.chr7.2018 Acer truncatum HOM05D005447 ORTHO05D006730 6.7e-92 341.3 249 67.1
Gohir.D05G045300 Gossypium hirsutum HOM05D005447 ORTHO05D006730 8.7e-92 340.9 246 69.5
Gohir.A05G043700 Gossypium hirsutum HOM05D005447 ORTHO05D006730 1.1e-91 340.5 246 69.5
Duzib168G1543 Durio zibethinus HOM05D005447 ORTHO05D006730 1.5e-91 340.1 245 70.2
EL10Ac2g03925 Beta vulgaris HOM05D005447 ORTHO05D006730 1.9e-91 339.7 242 65.7
AL7G18720 Arabidopsis lyrata HOM05D005447 ORTHO05D006730 4.3e-91 338.6 245 72.7
Carub.0007s0751 Capsella rubella HOM05D005447 ORTHO05D006730 5.6e-91 338.2 260 69.6
Hma1.2p1_1213F.1_g267530 Hydrangea macrophylla HOM05D005447 ORTHO05D006730 5.6e-91 338.2 243 67.9
Hma1.2p1_2708F.1_g327220 Hydrangea macrophylla HOM05D005447 ORTHO05D006730 5.6e-91 338.2 243 67.9
Psat5g036560 Pisum sativum HOM05D005447 ORTHO05D006730 2.8e-90 335.9 256 63.3
Peaxi162Scf00064g01636 Petunia axillaris HOM05D005447 ORTHO05D006730 3.7e-90 335.5 243 67.5
vmacro00161 Vaccinium macrocarpon HOM05D005447 ORTHO05D006730 3.7e-90 335.5 261 61.7
PGSC0003DMG400029302 Solanum tuberosum HOM05D005447 ORTHO05D006730 4.8e-90 335.1 242 66.9
MELO3C016858.2 Cucumis melo HOM05D005447 ORTHO05D006730 6.2e-90 334.7 248 62.9
Solyc12g095920.2 Solanum lycopersicum HOM05D005447 ORTHO05D006730 6.2e-90 334.7 242 66.1
Sopen12g031820 Solanum pennellii HOM05D005447 ORTHO05D006730 6.2e-90 334.7 242 66.1
Duzib187G1160 Durio zibethinus HOM05D005447 ORTHO05D006730 8.1e-90 334.3 244 69.7
Thecc.09G051400 Theobroma cacao HOM05D005447 ORTHO05D006730 8.1e-90 334.3 245 68.6
MD08G1073300 Malus domestica HOM05D005447 ORTHO05D006730 1.1e-89 334.0 246 65.4
CANSAT25G3707 Cannabis sativa HOM05D005447 ORTHO05D006730 1.4e-89 333.6 238 67.2
arahy.Tifrunner.gnm1.ann1.H6GXLW Arachis hypogaea HOM05D005447 ORTHO05D006730 1.8e-89 333.2 246 64.6
arahy.Tifrunner.gnm1.ann1.PT16FZ Arachis hypogaea HOM05D005447 ORTHO05D006730 1.8e-89 333.2 246 64.6
Medtr3g081440 Medicago truncatula HOM05D005447 ORTHO05D006730 2.4e-89 332.8 249 65.5
VMungo1309G1567 Vigna mungo HOM05D005447 ORTHO05D006730 4.0e-89 332.0 244 66.4
AT4G32970 Arabidopsis thaliana HOM05D005447 ORTHO05D006730 6.9e-89 331.3 254 68.9
CsaV3_4G035510 Cucumis sativus L. HOM05D005447 ORTHO05D006730 6.9e-89 331.3 248 62.5
RcHm_v2.0_Chr6g0310521 Rosa chinensis HOM05D005447 ORTHO05D006730 6.9e-89 331.3 245 65.3
CSS0040006 Camellia sinensis var. sinensis HOM05D005447 ORTHO05D006730 9.0e-89 330.9 243 65.4
Peaxi162Scf00436g00831 Petunia axillaris HOM05D005447 ORTHO05D006730 1.2e-88 330.5 244 65.6
Sabra18G0050000 Salix brachista HOM05D005447 ORTHO05D006730 2.0e-88 329.7 243 66.3
FAN27G1388 Fragaria x ananassa HOM05D005447 ORTHO05D006730 2.6e-88 329.3 244 65.6
FvH4_2g32160 Fragaria vesca HOM05D005447 ORTHO05D006730 3.4e-88 328.9 244 65.2
Cc08_g10370 Coffea canephora HOM05D005447 ORTHO05D006730 5.8e-88 328.2 240 65.4
Glyma.06G051000 Glycine max HOM05D005447 ORTHO05D006730 1.3e-87 327.0 252 65.1
Phvul.009G076500 Phaseolus vulgaris HOM05D005447 ORTHO05D006730 1.3e-87 327.0 244 65.6
Lju3103C0G11 Lonicera japonica HOM05D005447 ORTHO05D006730 2.2e-87 326.2 269 59.1
PSO063G2264 Papaver somniferum HOM05D005447 ORTHO05D006730 2.2e-87 326.2 243 64.6
HanXRQChr09g0251181 Helianthus annuus HOM05D005447 ORTHO05D006730 3.8e-87 325.5 246 65.4
Lsat_1_v5_gn_6_7400 Lactuca sativa HOM05D005447 ORTHO05D006730 4.9e-87 325.1 249 63.1
Hund03355 Selenicereus undatus HOM05D005447 ORTHO05D006730 4.9e-87 325.1 238 64.3
PSO832G2924 Papaver somniferum HOM05D005447 ORTHO05D006730 6.4e-87 324.7 243 64.2
Prupe.6G150100 Prunus persica HOM05D005447 ORTHO05D006730 6.4e-87 324.7 246 64.6
THA.LOC104818575 Tarenaya hassleriana HOM05D005447 ORTHO05D006730 6.4e-87 324.7 246 65.9
Potri.018G061800 Populus trichocarpa HOM05D005447 ORTHO05D006730 8.4e-87 324.3 243 65.0
PGR044G0161 Punica granatum HOM05D005447 ORTHO05D006730 1.1e-86 323.9 247 66.0
Sc06g0000920 Simmondsia chinensis HOM05D005447 ORTHO05D006730 2.4e-86 322.8 230 68.3
Nitab4.5_0011306g0050 Nicotiana tabacum HOM05D005447 ORTHO05D006730 1.2e-85 320.5 264 61.7
SGA_v2.0_scaffold1040G53805 Striga asiatica HOM05D005447 ORTHO05D006730 1.8e-84 316.6 245 63.7
TAR626G0638 Trochodendron aralioides HOM05D005447 ORTHO05D006730 1.8e-84 316.6 237 64.6
ECA233G2666 Erigeron canadensis HOM05D005447 ORTHO05D006730 8.7e-84 314.3 262 60.3
AUR62022047 Chenopodium quinoa HOM05D005447 ORTHO05D006730 1.5e-83 313.5 244 62.7
SalBow4G2766 Salvia bowleyana HOM05D005447 ORTHO05D006730 3.3e-83 312.4 239 63.2
Psat5g106840 Pisum sativum HOM05D005447 ORTHO05D006730 4.3e-83 312.0 242 61.6
Aqoxy6G02809 Aquilegia oxysepala HOM05D005447 ORTHO05D006730 1.6e-82 310.1 241 63.1
Hma1.2p1_1944F.1_g308590 Hydrangea macrophylla HOM05D005447 ORTHO05D006730 2.1e-82 309.7 240 64.2
Migut.A00152 Erythranthe guttata HOM05D005447 ORTHO05D006730 2.8e-82 309.3 245 62.0
Nn8g38949 Nelumbo nucifera HOM05D005447 ORTHO05D006730 8.2e-82 307.8 239 61.9
Aqoxy7G03929 Aquilegia oxysepala HOM05D005447 ORTHO05D006730 1.4e-81 307.0 241 63.1
Hma1.2p1_0482F.1_g162683 Hydrangea macrophylla HOM05D005447 ORTHO05D006730 1.8e-81 306.6 233 64.8
COL.COLO4_21030 Corchorus olitorius HOM05D005447 ORTHO05D006730 3.1e-81 305.8 233 66.5
HPP92_026778 Vanilla planifolia HOM05D005447 ORTHO05D006730 1.5e-80 303.5 230 61.7
MSTRG.11670 Avicennia marina HOM05D005447 ORTHO05D006730 2.6e-80 302.8 242 60.7
unitig_748.g8015 Utricularia gibba HOM05D005447 ORTHO05D006730 3.4e-80 302.4 245 61.6
DCAR_004444 Daucus carota HOM05D005447 ORTHO05D006730 9.3e-78 294.3 242 58.7
ATR0789G081 Amborella trichopoda HOM05D005447 ORTHO05D006730 4.6e-77 292.0 254 59.4
DCAR_004445 Daucus carota HOM05D005447 ORTHO05D006730 5.1e-76 288.5 238 58.0
Lj7C280G4 Lonicera japonica HOM05D005447 ORTHO05D006730 1.5e-72 276.9 269 52.0
AUR62009180 Chenopodium quinoa HOM05D005447 ORTHO05D006730 2.0e-72 276.6 215 63.3
Os06g0150100 Oryza sativa ssp. japonica HOM05D005447 ORTHO05D006730 5.0e-71 271.9 270 51.5
Zm00001eb270840 Zea mays HOM05D005447 ORTHO05D006730 1.8e-65 253.4 267 49.1
Ah.11g044670 Amaranthus hybridus HOM05D005447 ORTHO05D006730 2.4e-65 253.1 241 51.9
Pp3c6_24590 Physcomitrium patens HOM05D005447 ORTHO05D006730 3.4e-64 249.2 243 53.9
SEGI_08476 Sequoiadendron giganteum HOM05D005447 ORTHO05D006730 1.4e-62 243.8 233 54.5
Haze_18213 Corylus avellana HOM05D005447 ORTHO05D006730 5.5e-62 241.9 162 71.6
AUR62022045 Chenopodium quinoa HOM05D005447 ORTHO05D006730 1.0e-60 237.7 161 69.6
Nitab4.5_0001179g0010 Nicotiana tabacum HOM05D005447 ORTHO05D006730 1.8e-60 236.9 186 63.4
CDE04G0748 Ceratophyllum demersum HOM05D005447 ORTHO05D006730 1.2e-56 224.2 176 62.5
Oeu057690.3 Olea europaea HOM05D005447 ORTHO05D006730 5.9e-56 221.9 162 66.0
ClCG05G017740 Citrullus lanatus HOM05D005447 ORTHO05D006730 1.3e-55 220.7 161 65.2
Mapoly0129s0035 Marchantia polymorpha HOM05D005447 ORTHO05D006730 1.1e-54 217.6 251 45.4
FAN15G0839 Fragaria x ananassa HOM05D005447 ORTHO05D006730 1.2e-53 214.2 143 68.5
CBR_g6395 Chara braunii HOM05D005447 ORTHO05D006730 4.8e-50 202.2 233 47.2
Eucgr.C03947 Eucalyptus grandis HOM05D005447 ORTHO05D006730 2.5e-46 189.9 147 66.0
AagrBONN_evm.TU.Sc2ySwM_344.4531 Anthoceros agrestis HOM05D005447 ORTHO05D006730 1.5e-43 180.6 187 51.9
SMO367G0921 Selaginella moellendorffii HOM05D005447 ORTHO05D006730 3.3e-43 179.5 217 42.9
Nitab4.5_0000359g0050 Nicotiana tabacum HOM05D006502 ORTHO05D006730 8.2e-42 174.9 112 69.6
AUR62009181 Chenopodium quinoa HOM05D005447 ORTHO05D006730 1.8e-41 173.7 134 64.9
FAN24G0255 Fragaria x ananassa HOM05D005447 ORTHO05D006730 1.9e-38 163.7 135 63.7
FAN20G2744 Fragaria x ananassa HOM05D005447 ORTHO05D006730 2.7e-37 159.8 135 62.2
Oeu036349.1 Olea europaea HOM05D005447 ORTHO05D006730 3.7e-34 149.4 148 55.4
MSTRG.25940 Avicennia marina HOM05D005447 ORTHO05D006730 1.7e-31 140.6 100 61.0
C01p05700 Brassica napus HOM05D005447 ORTHO05D006730 3.8e-31 139.4 98 72.4
BolC1t00551H Brassica oleracea HOM05D005447 ORTHO05D006730 3.8e-31 139.4 98 72.4
VMungo0251G2120 Vigna mungo HOM05D005447 ORTHO05D006730 8.9e-28 128.3 148 45.9
SEGI_23140 Sequoiadendron giganteum HOM05D005447 ORTHO05D006730 8.3e-26 121.7 138 52.2
Actinidia01202 Actinidia chinensis HOM05D005447 ORTHO05D006730 9.2e-25 118.2 75 69.3
TPR.G36227 Trifolium pratense HOM05D005447 ORTHO05D006730 1.0e-23 114.8 79 65.8
GSVIVG01035346001 Vitis vinifera HOM05D005447 ORTHO05D006730 1.7e-23 114.0 91 65.9
AUR62025497 Chenopodium quinoa HOM05D005447 ORTHO05D006730 2.3e-23 113.6 80 62.5
VMungo0540G0355 Vigna mungo HOM05D005447 ORTHO05D006730 7.3e-22 108.6 106 54.7
SHI18783 Sapria himalayana HOM05D005447 ORTHO05D006730 8.9e-20 101.7 82 58.5
AUR62022046 Chenopodium quinoa HOM05D005447 ORTHO05D006730 1.7e-15 87.4 244 29.9
Cre13.g604850 Chlamydomonas reinhardtii HOM05D005447 ORTHO05D006730 1.8e-12 77.4 232 30.2
Gorai.010G105200 Gossypium raimondii HOM05D005447 ORTHO05D006730 4.4e-11 72.8 66 56.1
Gohir.D06G091250 Gossypium hirsutum HOM05D005447 ORTHO05D006730 8.3e-10 68.6 66 53.0
Gohir.D06G091325 Gossypium hirsutum HOM05D005447 ORTHO05D006730 8.3e-10 68.6 66 53.0


User provided reference genes

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