Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung02130 Brassica carinata HOM05D004460 ORTHO05D005254 8.7e-207 723.4 362 100.0
C09p74140 Brassica napus HOM05D004460 ORTHO05D005254 2.0e-203 712.2 362 99.2
BolC9t60146H Brassica oleracea HOM05D004460 ORTHO05D005254 4.4e-203 711.1 362 98.9
A10p33230 Brassica napus HOM05D004460 ORTHO05D005254 2.9e-202 708.4 362 98.3
BraA10t45351Z Brassica rapa HOM05D004460 ORTHO05D005254 2.9e-202 708.4 362 98.3
BcaC06g31990 Brassica carinata HOM05D004460 ORTHO05D005254 7.9e-200 700.3 362 97.0
Carub.0005s1090 Capsella rubella HOM05D004460 ORTHO05D005254 2.8e-197 691.8 361 95.0
AL5G23600 Arabidopsis lyrata HOM05D004460 ORTHO05D005254 3.4e-195 684.9 361 94.2
AT3G45100 Arabidopsis thaliana HOM05D004460 ORTHO05D005254 7.6e-195 683.7 361 94.2
Thhalv10002532m.g Eutrema salsugineum HOM05D004460 ORTHO05D005254 7.6e-195 683.7 357 95.5
Aa31sc412G40 Aethionema arabicum HOM05D004460 ORTHO05D005254 5.5e-193 677.6 357 95.2
THA.LOC104799510 Tarenaya hassleriana HOM05D004460 ORTHO05D005254 5.8e-187 657.5 356 91.0
Cfa020869 Carpinus fangiana HOM05D004460 ORTHO05D005254 7.2e-177 624.0 357 85.7
MD11G1006700 Malus domestica HOM05D004460 ORTHO05D005254 9.3e-177 623.6 356 86.0
MD11G1007700 Malus domestica HOM05D004460 ORTHO05D005254 9.3e-177 623.6 356 86.0
Prupe.6G004900 Prunus persica HOM05D004460 ORTHO05D005254 1.0e-175 620.2 356 85.7
Potri.016G130000 Populus trichocarpa HOM05D004460 ORTHO05D005254 8.7e-175 617.1 356 84.3
RcHm_v2.0_Chr5g0083231 Rosa chinensis HOM05D004460 ORTHO05D005254 1.9e-174 615.9 356 85.4
Actinidia37745 Actinidia chinensis HOM05D004460 ORTHO05D005254 3.3e-174 615.1 357 84.9
Ciclev10001076m.g Citrus clementina HOM05D004460 ORTHO05D005254 3.3e-174 615.1 357 84.6
Gohir.A03G031600 Gossypium hirsutum HOM05D004460 ORTHO05D005254 3.3e-174 615.1 357 83.8
Gohir.D03G136700 Gossypium hirsutum HOM05D004460 ORTHO05D005254 9.7e-174 613.6 357 83.5
Gorai.003G143800 Gossypium raimondii HOM05D004460 ORTHO05D005254 9.7e-174 613.6 357 83.5
Actinidia03999 Actinidia chinensis HOM05D004460 ORTHO05D005254 2.2e-173 612.5 357 84.3
Duzib150G0635 Durio zibethinus HOM05D004460 ORTHO05D005254 1.4e-172 609.8 357 83.5
Manes.04G016600 Manihot esculenta HOM05D004460 ORTHO05D005254 1.8e-172 609.4 361 83.1
Eucgr.J00902 Eucalyptus grandis HOM05D004460 ORTHO05D005254 2.4e-172 609.0 357 82.9
CANSAT11G2169 Cannabis sativa HOM05D004460 ORTHO05D005254 3.1e-172 608.6 356 84.6
CiPaw.16G116700 Carya illinoinensis HOM05D004460 ORTHO05D005254 3.1e-172 608.6 357 84.9
Lj1A198T34 Lonicera japonica HOM05D004460 ORTHO05D005254 4.1e-172 608.2 357 83.8
Lalb_Chr14g0374551 Lupinus albus HOM05D004460 ORTHO05D005254 4.1e-172 608.2 357 82.6
TAR624G1319 Trochodendron aralioides HOM05D004460 ORTHO05D005254 4.1e-172 608.2 357 83.5
QL02p091623 Quercus lobata HOM05D004460 ORTHO05D005254 5.3e-172 607.8 357 84.0
Thecc.09G346400 Theobroma cacao HOM05D004460 ORTHO05D005254 5.3e-172 607.8 357 83.5
Haze_19298 Corylus avellana HOM05D004460 ORTHO05D005254 2.0e-171 605.9 357 84.0
Phvul.005G132400 Phaseolus vulgaris HOM05D004460 ORTHO05D005254 2.0e-171 605.9 358 82.4
TWI79G0138 Tripterygium wilfordii HOM05D004460 ORTHO05D005254 2.6e-171 605.5 356 83.7
CSS0019934 Camellia sinensis var. sinensis HOM05D004460 ORTHO05D005254 3.4e-171 605.1 356 83.4
PSO675G8453 Papaver somniferum HOM05D004460 ORTHO05D005254 4.5e-171 604.7 356 83.1
CANSAT11G0913 Cannabis sativa HOM05D004460 ORTHO05D005254 7.7e-171 604.0 356 84.0
GSVIVG01024777001 Vitis vinifera HOM05D004460 ORTHO05D005254 7.7e-171 604.0 361 82.0
MSTRG.19754 Avicennia marina HOM05D004460 ORTHO05D005254 1.3e-170 603.2 358 82.7
arahy.Tifrunner.gnm1.ann1.NXCQ1Z Arachis hypogaea HOM05D004460 ORTHO05D005254 1.7e-170 602.8 357 81.5
HanXRQChr01g0023931 Helianthus annuus HOM05D004460 ORTHO05D005254 1.7e-170 602.8 356 82.3
Nn1g07453 Nelumbo nucifera HOM05D004460 ORTHO05D005254 1.7e-170 602.8 357 82.4
QL02p091680 Quercus lobata HOM05D004460 ORTHO05D005254 2.2e-170 602.4 357 82.9
Atru.chr3.3576 Acer truncatum HOM05D004460 ORTHO05D005254 2.9e-170 602.1 356 83.1
CsaV3_1G042370 Cucumis sativus L. HOM05D004460 ORTHO05D005254 5.0e-170 601.3 362 80.9
ECA248G3543 Erigeron canadensis HOM05D004460 ORTHO05D005254 5.0e-170 601.3 359 81.3
arahy.Tifrunner.gnm1.ann1.B5CH19 Arachis hypogaea HOM05D004460 ORTHO05D005254 6.5e-170 600.9 357 81.2
Glyma.20G052000 Glycine max HOM05D004460 ORTHO05D005254 1.4e-169 599.7 356 82.3
SGA_v2.0_scaffold66G22336 Striga asiatica HOM05D004460 ORTHO05D005254 1.4e-169 599.7 358 81.8
ClCG03G013680 Citrullus lanatus HOM05D004460 ORTHO05D005254 1.9e-169 599.4 362 81.5
Aqoxy3G02716 Aquilegia oxysepala HOM05D004460 ORTHO05D005254 3.2e-169 598.6 359 82.7
Lj3g0001995 Lotus japonicus HOM05D004460 ORTHO05D005254 3.2e-169 598.6 356 81.7
arahy.Tifrunner.gnm1.ann1.N29Z6M Arachis hypogaea HOM05D004460 ORTHO05D005254 4.2e-169 598.2 357 80.7
Cpa.g.sc65.21 Carica papaya HOM05D004460 ORTHO05D005254 5.5e-169 597.8 357 81.2
TPR.G11973 Trifolium pratense HOM05D004460 ORTHO05D005254 7.2e-169 597.4 356 81.2
VMungo1080G0188 Vigna mungo HOM05D004460 ORTHO05D005254 7.2e-169 597.4 358 81.3
Dinv32698 Davidia involucrata HOM05D004460 ORTHO05D005254 1.2e-168 596.7 346 85.3
Sc04g0002220 Simmondsia chinensis HOM05D004460 ORTHO05D005254 1.2e-168 596.7 358 81.3
Ca_01392_v3 Cicer arietinum L. HOM05D004460 ORTHO05D005254 1.6e-168 596.3 356 82.3
FvH4_3g45430 Fragaria vesca HOM05D004460 ORTHO05D005254 2.1e-168 595.9 392 77.6
Ca_25732_v3 Cicer arietinum L. HOM05D004460 ORTHO05D005254 2.7e-168 595.5 356 81.5
Migut.J01586 Erythranthe guttata HOM05D004460 ORTHO05D005254 2.7e-168 595.5 361 80.3
Sed0018938 Sechium edule HOM05D004460 ORTHO05D005254 2.7e-168 595.5 362 81.5
vmacro21498 Vaccinium macrocarpon HOM05D004460 ORTHO05D005254 6.1e-168 594.3 370 80.5
Solyc08g082840.3 Solanum lycopersicum HOM05D004460 ORTHO05D005254 2.3e-167 592.4 357 81.5
HPP92_024369 Vanilla planifolia HOM05D004460 ORTHO05D005254 2.3e-167 592.4 358 81.0
unitig_899.g14459 Utricularia gibba HOM05D004460 ORTHO05D005254 3.9e-167 591.7 361 82.0
Sopen08g031070 Solanum pennellii HOM05D004460 ORTHO05D005254 8.8e-167 590.5 357 81.2
Medtr4g089065 Medicago truncatula HOM05D004460 ORTHO05D005254 1.1e-166 590.1 361 80.1
Os07g0270950 Oryza sativa ssp. japonica HOM05D004460 ORTHO05D005254 3.3e-166 588.6 357 81.5
TPR.G11585 Trifolium pratense HOM05D004460 ORTHO05D005254 3.3e-166 588.6 346 83.5
FvH4_6g19460 Fragaria vesca HOM05D004460 ORTHO05D005254 5.7e-166 587.8 373 79.9
Zm00001eb097230 Zea mays HOM05D004460 ORTHO05D005254 1.3e-165 586.6 357 80.7
ATR0315G079 Amborella trichopoda HOM05D004460 ORTHO05D005254 1.7e-165 586.3 357 80.1
Hund03380 Selenicereus undatus HOM05D004460 ORTHO05D005254 1.8e-164 582.8 357 79.3
Zm00001eb322240 Zea mays HOM05D004460 ORTHO05D005254 1.8e-164 582.8 357 80.4
Glyma.13G182200 Glycine max HOM05D004460 ORTHO05D005254 1.5e-163 579.7 358 78.2
CDE04G3212 Ceratophyllum demersum HOM05D004460 ORTHO05D005254 1.3e-162 576.6 357 77.0
Medtr2g095220 Medicago truncatula HOM05D004460 ORTHO05D005254 2.5e-161 572.4 347 82.1
arahy.Tifrunner.gnm1.ann1.MW8ZKL Arachis hypogaea HOM05D004460 ORTHO05D005254 1.8e-159 566.2 358 77.9
EL10Ac2g03980 Beta vulgaris HOM05D004460 ORTHO05D005254 1.8e-159 566.2 357 78.2
Lalb_Chr16g0383601 Lupinus albus HOM05D004460 ORTHO05D005254 8.8e-159 563.9 356 77.8
arahy.Tifrunner.gnm1.ann1.HPBL6V Arachis hypogaea HOM05D004460 ORTHO05D005254 1.1e-158 563.5 358 77.4
Lsat_1_v5_gn_1_77661 Lactuca sativa HOM05D004460 ORTHO05D005254 2.0e-158 562.8 358 77.9
Sp6g40060 Schrenkiella parvula HOM05D004460 ORTHO05D005254 5.7e-158 561.2 295 96.3
Nitab4.5_0002151g0070 Nicotiana tabacum HOM05D004460 ORTHO05D005254 4.1e-156 555.1 434 68.2
Peaxi162Scf00503g00426 Petunia axillaris HOM05D004460 ORTHO05D005254 3.5e-155 552.0 361 76.7
DCAR_003960 Daucus carota HOM05D004460 ORTHO05D005254 2.2e-154 549.3 316 86.7
Hma1.2p1_2380F.1_g320963 Hydrangea macrophylla HOM05D004460 ORTHO05D005254 2.5e-153 545.8 317 86.1
Pp3c16_10880 Physcomitrium patens HOM05D004460 ORTHO05D005254 2.5e-153 545.8 357 75.1
Phvul.002G226400 Phaseolus vulgaris HOM05D004460 ORTHO05D005254 2.3e-151 539.3 339 76.7
MBI01_g34901_MAGBIO Magnolia biondii HOM05D004460 ORTHO05D005254 5.2e-151 538.1 359 75.8
Ah.10g034870 Amaranthus hybridus HOM05D004460 ORTHO05D005254 6.7e-151 537.7 357 75.9
arahy.Tifrunner.gnm1.ann1.QEP9US Arachis hypogaea HOM05D004460 ORTHO05D005254 6.7e-151 537.7 318 82.7
Rhsim03G0064700 Rhododendron simsii HOM05D004460 ORTHO05D005254 1.5e-150 536.6 379 72.0
COL.COLO4_18287 Corchorus olitorius HOM05D004460 ORTHO05D005254 4.4e-150 535.0 311 84.9
SHI20353 Sapria himalayana HOM05D004460 ORTHO05D005254 1.8e-148 529.6 343 76.1
Mapoly0056s0054 Marchantia polymorpha HOM05D004460 ORTHO05D005254 1.6e-144 516.5 356 70.5
SMO353G0094 Selaginella moellendorffii HOM05D004460 ORTHO05D005254 6.1e-144 514.6 358 70.1
FAN16G0028 Fragaria x ananassa HOM05D004460 ORTHO05D005254 2.3e-143 512.7 356 73.3
FAN21G3501 Fragaria x ananassa HOM05D004460 ORTHO05D005254 2.3e-143 512.7 356 73.3
AUR62009232 Chenopodium quinoa HOM05D004460 ORTHO05D005254 4.0e-143 511.9 360 72.2
TAR626G0869 Trochodendron aralioides HOM05D004460 ORTHO05D005254 5.2e-143 511.5 355 73.5
Oeu022026.1 Olea europaea HOM05D004460 ORTHO05D005254 4.5e-139 498.4 356 70.5
Atru.chr3.596 Acer truncatum HOM05D004460 ORTHO05D005254 1.9e-137 493.0 357 71.1
Nitab4.5_0004436g0010 Nicotiana tabacum HOM05D004460 ORTHO05D005254 2.1e-136 489.6 355 72.4
BolC2t06047H Brassica oleracea HOM05D004460 ORTHO05D005254 4.0e-135 485.3 291 86.9
Psat5g279520 Pisum sativum HOM05D004460 ORTHO05D005254 3.4e-134 482.3 286 83.9
Actinidia03889 Actinidia chinensis HOM05D004460 ORTHO05D005254 4.4e-134 481.9 357 68.6
AUR62040232 Chenopodium quinoa HOM05D004460 ORTHO05D005254 4.4e-134 481.9 357 68.1
FAN11G0550 Fragaria x ananassa HOM05D004460 ORTHO05D005254 2.2e-133 479.6 379 67.0
CBR_g8747 Chara braunii HOM05D004460 ORTHO05D005254 8.3e-133 477.6 358 65.1
MELO3C015670.2 Cucumis melo HOM05D004460 ORTHO05D005254 1.4e-132 476.9 346 69.9
PGSC0003DMG400012127 Solanum tuberosum HOM05D004460 ORTHO05D005254 5.6e-129 464.9 355 67.9
BcaB05g21890 Brassica carinata HOM05D004460 ORTHO05D005254 1.2e-118 430.6 274 82.8
Cc01_g10730 Coffea canephora HOM05D004460 ORTHO05D005254 2.9e-117 426.0 245 86.9
arahy.Tifrunner.gnm1.ann1.RT1NLW Arachis hypogaea HOM05D004460 ORTHO05D005254 4.9e-117 425.2 270 80.4
AagrBONN_evm.TU.Sc2ySwM_344.3907 Anthoceros agrestis HOM05D004460 ORTHO05D005254 3.6e-112 409.1 269 75.5
Prupe.6G143200 Prunus persica HOM05D004460 ORTHO05D005254 1.8e-111 406.8 332 67.8
CARHR150840 Cardamine hirsuta HOM05D004460 ORTHO05D005254 8.3e-109 397.9 214 93.5
MD03G1005200 Malus domestica HOM05D004460 ORTHO05D005254 8.3e-109 397.9 270 77.4
Cre01.g006800 Chlamydomonas reinhardtii HOM05D004460 ORTHO05D005254 2.3e-98 363.2 366 52.2
Psat7g112240 Pisum sativum HOM05D004460 ORTHO05D005254 6.6e-98 361.7 221 82.8
Cfa022887 Carpinus fangiana HOM05D004460 ORTHO05D005254 4.7e-96 355.5 399 47.6
SEGI_40785 Sequoiadendron giganteum HOM05D004460 ORTHO05D005254 6.2e-96 355.1 234 76.9
MCO11G325 Micromonas commoda HOM05D004460 ORTHO05D005254 9.0e-95 351.3 379 48.8
BraA02t04718Z Brassica rapa HOM05D004460 ORTHO05D005254 4.2e-92 342.4 209 86.6
Haze_27141 Corylus avellana HOM05D004460 ORTHO05D005254 1.6e-91 340.5 357 49.9
Hma1.2p1_1786F.1_g302290 Hydrangea macrophylla HOM05D004460 ORTHO05D005254 1.7e-90 337.0 197 83.8
PRCOL_00000052 Prasinoderma coloniale HOM05D004460 ORTHO05D005254 2.6e-86 323.2 393 45.8
arahy.Tifrunner.gnm1.ann1.TK1EDX Arachis hypogaea HOM05D004460 ORTHO05D005254 7.9e-83 311.6 193 79.8
Lj4A675G47 Lonicera japonica HOM05D004460 ORTHO05D005254 4.8e-80 302.4 210 74.3
Sabra16G0128800 Salix brachista HOM05D004460 ORTHO05D005254 1.3e-74 284.3 164 86.0
arahy.Tifrunner.gnm1.ann1.X9KU0H Arachis hypogaea HOM05D004460 ORTHO05D005254 4.3e-73 279.3 197 71.1
FAN25G0085 Fragaria x ananassa HOM05D004460 ORTHO05D005254 4.0e-71 272.7 312 52.9
arahy.Tifrunner.gnm1.ann1.U8K6WM Arachis hypogaea HOM05D004460 ORTHO05D005254 5.3e-71 272.3 168 75.6
VMungo0251G0290 Vigna mungo HOM05D004460 ORTHO05D005254 2.2e-69 266.9 160 81.2
Peaxi162Scf00073g01829 Petunia axillaris HOM05D004460 ORTHO05D005254 3.2e-68 263.1 161 81.4
BcaC03g13060 Brassica carinata HOM05D004460 ORTHO05D005254 2.9e-61 240.0 149 83.2
C02p00480 Brassica napus HOM05D004460 ORTHO05D005254 3.2e-60 236.5 147 83.7
arahy.Tifrunner.gnm1.ann1.XS4KTC Arachis hypogaea HOM05D004460 ORTHO05D005254 1.1e-52 211.5 125 80.0
Lj4A665T31 Lonicera japonica HOM05D004460 ORTHO05D005254 3.0e-50 203.4 123 80.5
MSTRG.17732 Avicennia marina HOM05D004460 ORTHO05D005254 3.1e-47 193.4 123 75.6
HPP92_027906 Vanilla planifolia HOM05D004460 ORTHO05D005254 2.2e-45 187.2 224 51.3
Glyma.20G052400 Glycine max HOM05D004460 ORTHO05D005254 1.5e-41 174.5 109 72.5
VMungo0251G0332 Vigna mungo HOM05D004460 ORTHO05D005254 2.6e-41 173.7 174 56.9
Cc01_g10740 Coffea canephora HOM05D004460 ORTHO05D005254 6.3e-40 169.1 109 71.6
C02p00470 Brassica napus HOM05D004460 ORTHO05D005254 7.2e-36 155.6 86 91.9
Psat7g055560 Pisum sativum HOM05D004460 ORTHO05D005254 7.7e-30 135.6 136 52.2
Psat3g055640 Pisum sativum HOM05D004460 ORTHO05D005254 3.8e-29 133.3 78 75.6
Carub.0004s0823 Capsella rubella HOM05D004460 ORTHO05D005254 7.5e-25 119.0 76 81.6
Psat6g225840 Pisum sativum HOM05D004460 ORTHO05D005254 2.8e-24 117.1 74 68.9
CAN.G567.62 Capsicum annuum HOM05D004460 ORTHO05D005254 1.4e-23 114.8 96 62.5
SEGI_00213 Sequoiadendron giganteum HOM05D004460 ORTHO05D005254 1.2e-19 101.7 76 55.3
HPP92_024473 Vanilla planifolia HOM05D004460 ORTHO05D005254 1.6e-14 84.7 61 73.8
FAN23G3015 Fragaria x ananassa HOM05D004460 ORTHO05D005254 8.9e-10 68.9 40 82.5
Medtr2g047140 Medicago truncatula HOM05D004460 ORTHO05D005254 1.2e-09 68.6 35 85.7
Solyc09g014300.3 Solanum lycopersicum HOM05D003378 ORTHO05D003942 1.6e-06 58.2 209 26.8
Nitab4.5_0004030g0030 Nicotiana tabacum HOM05D003378 ORTHO05D003942 2.0e-06 57.8 170 29.4
CAN.G355.3 Capsicum annuum HOM05D003378 ORTHO05D003942 3.5e-06 57.0 209 28.2
Cc06_g01590 Coffea canephora HOM05D003378 ORTHO05D003942 4.6e-06 56.6 116 29.3
Nitab4.5_0000008g0880 Nicotiana tabacum HOM05D003378 ORTHO05D003942 4.6e-06 56.6 170 28.8
AT1G73160 Arabidopsis thaliana HOM05D002124 ORTHO05D004058 6.0e-06 56.2 159 29.6
Sopen09g007150 Solanum pennellii HOM05D003378 ORTHO05D003942 6.0e-06 56.2 209 26.3
PGSC0003DMG400020317 Solanum tuberosum HOM05D003378 ORTHO05D003942 6.0e-06 56.2 215 26.5
unitig_27.g24826 Utricularia gibba HOM05D003378 ORTHO05D003942 7.8e-06 55.8 116 31.0


User provided reference genes

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