Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung02118 Brassica carinata HOM05D005991 ORTHO05D007408 3.2e-117 425.2 238 100.0
C07p40040 Brassica napus HOM05D005991 ORTHO05D007408 3.2e-117 425.2 238 100.0
BolC7t44538H Brassica oleracea HOM05D005991 ORTHO05D007408 1.9e-114 416.0 238 98.7
BraA06t26732Z Brassica rapa HOM05D005991 ORTHO05D007408 1.0e-110 403.7 239 97.5
A06p38170 Brassica napus HOM05D005991 ORTHO05D007408 6.5e-110 401.0 239 96.7
Sp2g19950 Schrenkiella parvula HOM05D005991 ORTHO05D007408 8.5e-94 347.4 247 83.4
BcaB04g19640 Brassica carinata HOM05D005991 ORTHO05D007408 1.8e-91 339.7 242 83.9
A09p05050 Brassica napus HOM05D005991 ORTHO05D007408 1.7e-89 333.2 241 83.0
BraA09t36144Z Brassica rapa HOM05D005991 ORTHO05D007408 1.7e-89 333.2 241 83.0
Sp6g09550 Schrenkiella parvula HOM05D005991 ORTHO05D007408 2.2e-89 332.8 246 80.5
Thhalv10004825m.g Eutrema salsugineum HOM05D005991 ORTHO05D007408 5.9e-87 324.7 251 77.3
AL6G41020 Arabidopsis lyrata HOM05D005991 ORTHO05D007408 6.5e-86 321.2 247 78.1
AT5G30490 Arabidopsis thaliana HOM05D005991 ORTHO05D007408 7.2e-85 317.8 247 78.5
Carub.0020s0004 Capsella rubella HOM05D005991 ORTHO05D007408 2.7e-84 315.8 237 78.5
C09p05460 Brassica napus HOM05D005991 ORTHO05D007408 6.7e-83 311.2 237 79.7
BcaC04g23714 Brassica carinata HOM05D005991 ORTHO05D007408 2.2e-81 306.2 235 79.6
Aa31LG11G8380 Aethionema arabicum HOM05D005991 ORTHO05D007408 4.1e-80 302.0 243 73.3
CARHR185530 Cardamine hirsuta HOM05D005991 ORTHO05D007408 2.9e-78 295.8 249 72.3
BcaC06g30693 Brassica carinata HOM05D005991 ORTHO05D007408 5.0e-78 295.0 252 73.8
BolC9t53475H Brassica oleracea HOM05D005991 ORTHO05D007408 7.2e-77 291.2 262 71.4
THA.LOC104827106 Tarenaya hassleriana HOM05D005991 ORTHO05D007408 3.7e-65 252.3 237 65.8
Cfa015696 Carpinus fangiana HOM05D005991 ORTHO05D007408 2.2e-57 226.5 243 58.8
Haze_00826 Corylus avellana HOM05D005991 ORTHO05D007408 1.4e-56 223.8 243 58.4
Sed0009947 Sechium edule HOM05D005991 ORTHO05D007408 4.6e-55 218.8 243 57.2
ClCG06G004330 Citrullus lanatus HOM05D005991 ORTHO05D007408 2.3e-54 216.5 234 56.8
Dinv05101 Davidia involucrata HOM05D005991 ORTHO05D007408 2.3e-54 216.5 220 60.9
MBI18_g36460_MAGBIO Magnolia biondii HOM05D005991 ORTHO05D007408 3.0e-54 216.1 219 57.5
MSTRG.22639 Avicennia marina HOM05D005991 ORTHO05D007408 3.3e-53 212.6 225 58.7
MELO3C021248.2 Cucumis melo HOM05D005991 ORTHO05D007408 4.3e-53 212.2 241 55.6
CsaV3_6G000060 Cucumis sativus L. HOM05D005991 ORTHO05D007408 1.2e-52 210.7 241 55.2
Cpa.g.sc146.66 Carica papaya HOM05D005991 ORTHO05D007408 2.8e-52 209.5 231 55.4
Migut.I00898 Erythranthe guttata HOM05D005991 ORTHO05D007408 3.6e-52 209.1 248 55.6
Eucgr.H04085 Eucalyptus grandis HOM05D005991 ORTHO05D007408 6.2e-52 208.4 231 57.1
PGR004G0142 Punica granatum HOM05D005991 ORTHO05D007408 1.8e-51 206.8 221 57.5
GSVIVG01017637001 Vitis vinifera HOM05D005991 ORTHO05D007408 1.8e-51 206.8 242 54.1
TAR633G0953 Trochodendron aralioides HOM05D005991 ORTHO05D007408 2.3e-51 206.5 222 58.1
Os01g0328500 Oryza sativa ssp. japonica HOM05D005991 ORTHO05D007408 4.0e-51 205.7 233 52.8
Manes.03G209000 Manihot esculenta HOM05D005991 ORTHO05D007408 6.8e-51 204.9 216 58.8
Lj4g0017646 Lotus japonicus HOM05D005991 ORTHO05D007408 8.9e-51 204.5 231 58.0
Psat0s2692g0080 Pisum sativum HOM05D005991 ORTHO05D007408 8.9e-51 204.5 241 57.3
Lalb_Chr13g0298761 Lupinus albus HOM05D005991 ORTHO05D007408 1.2e-50 204.1 227 57.7
Rhsim02G0001600 Rhododendron simsii HOM05D005991 ORTHO05D007408 1.2e-50 204.1 231 57.6
SGA_v2.0_scaffold66G22528 Striga asiatica HOM05D002451 ORTHO05D005601 1.2e-50 204.1 241 54.4
Potri.010G151300 Populus trichocarpa HOM05D005991 ORTHO05D007408 1.5e-50 203.8 238 55.0
TWI73G0156 Tripterygium wilfordii HOM05D005991 ORTHO05D007408 7.5e-50 201.4 226 58.8
CiPaw.01G133100 Carya illinoinensis HOM05D005991 ORTHO05D007408 1.3e-49 200.7 189 65.6
CSS0003210 Camellia sinensis var. sinensis HOM05D005991 ORTHO05D007408 1.7e-49 200.3 242 53.7
Glyma.07G232800 Glycine max HOM05D005991 ORTHO05D007408 1.7e-49 200.3 229 56.3
EL10Ac2g02410 Beta vulgaris HOM05D005991 ORTHO05D007408 2.9e-49 199.5 239 54.0
DCAR_019078 Daucus carota HOM05D005991 ORTHO05D007408 3.7e-49 199.1 247 51.4
TWI53G1476 Tripterygium wilfordii HOM05D005991 ORTHO05D007408 3.7e-49 199.1 227 57.3
Sc23g0006090 Simmondsia chinensis HOM05D005991 ORTHO05D007408 6.4e-49 198.4 237 53.6
TPR.G12610 Trifolium pratense HOM05D005991 ORTHO05D007408 6.4e-49 198.4 241 56.4
TWI09G0093 Tripterygium wilfordii HOM05D005991 ORTHO05D007408 6.4e-49 198.4 228 56.1
Nitab4.5_0013885g0020 Nicotiana tabacum HOM05D005991 ORTHO05D007408 1.1e-48 197.6 228 56.1
Atru.chr4.3094 Acer truncatum HOM05D005991 ORTHO05D007408 1.4e-48 197.2 250 53.6
vmacro19301 Vaccinium macrocarpon HOM05D005991 ORTHO05D007408 1.9e-48 196.8 239 54.4
Medtr4g123060 Medicago truncatula HOM05D005991 ORTHO05D007408 3.2e-48 196.1 219 56.6
RcHm_v2.0_Chr4g0426321 Rosa chinensis HOM05D005991 ORTHO05D007408 7.0e-48 194.9 243 54.3
Actinidia18486 Actinidia chinensis HOM05D005991 ORTHO05D007408 1.2e-47 194.1 243 55.6
Phvul.003G118700 Phaseolus vulgaris HOM05D005991 ORTHO05D007408 1.6e-47 193.7 229 55.0
FvH4_4g20890 Fragaria vesca HOM05D005991 ORTHO05D007408 2.1e-47 193.4 243 54.3
FAN12G0391 Fragaria x ananassa HOM05D005991 ORTHO05D007408 4.6e-47 192.2 233 55.4
FAN17G2933 Fragaria x ananassa HOM05D005991 ORTHO05D007408 4.6e-47 192.2 243 53.5
Ah.11g042100 Amaranthus hybridus HOM05D005991 ORTHO05D007408 6.0e-47 191.8 230 50.0
FAN07G2713 Fragaria x ananassa HOM05D005991 ORTHO05D007408 6.0e-47 191.8 233 55.4
Oeu009727.1 Olea europaea HOM05D005991 ORTHO05D007408 6.0e-47 191.8 250 50.4
Zm00001eb131050 Zea mays HOM05D005991 ORTHO05D007408 6.0e-47 191.8 230 52.2
QL06p013384 Quercus lobata HOM05D005991 ORTHO05D007408 1.0e-46 191.0 243 53.9
MD13G1147500 Malus domestica HOM05D005991 ORTHO05D007408 1.3e-46 190.7 251 53.4
Thecc.04G307900 Theobroma cacao HOM05D005991 ORTHO05D007408 2.3e-46 189.9 289 45.3
Ca_21401_v3 Cicer arietinum L. HOM05D005991 ORTHO05D007408 3.0e-46 189.5 242 54.1
Ciclev10005452m.g Citrus clementina HOM05D005991 ORTHO05D007408 3.9e-46 189.1 241 52.3
Lj9A696T49 Lonicera japonica HOM05D005991 ORTHO05D007408 6.6e-46 188.3 242 50.0
Actinidia28298 Actinidia chinensis HOM05D005991 ORTHO05D007408 8.6e-46 188.0 253 53.0
Glyma.17G037800 Glycine max HOM05D005991 ORTHO05D007408 8.6e-46 188.0 229 55.0
Nitab4.5_0003374g0080 Nicotiana tabacum HOM05D005991 ORTHO05D007408 8.6e-46 188.0 227 55.5
unitig_32.g11589 Utricularia gibba HOM05D005991 ORTHO05D007408 1.1e-45 187.6 243 51.4
Zm00001eb340570 Zea mays HOM05D005991 ORTHO05D007408 1.5e-45 187.2 211 55.0
Prupe.1G111000 Prunus persica HOM05D005991 ORTHO05D007408 2.5e-45 186.4 250 53.6
Gohir.A02G056400 Gossypium hirsutum HOM05D005991 ORTHO05D007408 7.3e-45 184.9 243 49.8
Gohir.D02G061600 Gossypium hirsutum HOM05D005991 ORTHO05D007408 9.5e-45 184.5 243 49.0
Gorai.005G069300 Gossypium raimondii HOM05D005991 ORTHO05D007408 9.5e-45 184.5 243 49.0
TAR362G0621 Trochodendron aralioides HOM05D005991 ORTHO05D007408 2.1e-44 183.3 220 54.5
ECA234G0222 Erigeron canadensis HOM05D005991 ORTHO05D007408 2.8e-44 183.0 236 49.6
VMungo1215G0582 Vigna mungo HOM05D005991 ORTHO05D007408 3.6e-44 182.6 229 53.7
Nn3g21864 Nelumbo nucifera HOM05D005991 ORTHO05D007408 4.7e-44 182.2 219 54.8
Lsat_1_v5_gn_4_27741 Lactuca sativa HOM05D005991 ORTHO05D007408 8.1e-44 181.4 228 48.2
PGSC0003DMG400030844 Solanum tuberosum HOM05D005991 ORTHO05D007408 5.2e-43 178.7 227 51.1
Aqoxy7G00454 Aquilegia oxysepala HOM05D005991 ORTHO05D007408 1.5e-42 177.2 236 52.1
HanXRQChr16g0526201 Helianthus annuus HOM05D005991 ORTHO05D007408 2.0e-42 176.8 247 47.0
MD16G1145900 Malus domestica HOM05D005991 ORTHO05D007408 2.6e-42 176.4 221 54.3
Sopen04g029760 Solanum pennellii HOM05D005991 ORTHO05D007408 2.6e-42 176.4 224 52.2
COL.COLO4_34551 Corchorus olitorius HOM05D005991 ORTHO05D007408 3.4e-42 176.0 161 65.2
arahy.Tifrunner.gnm1.ann1.ELD4MI Arachis hypogaea HOM05D005991 ORTHO05D007408 5.8e-42 175.3 223 52.0
CAN.G1173.8 Capsicum annuum HOM05D005991 ORTHO05D007408 1.3e-41 174.1 223 52.0
Duzib151G0057 Durio zibethinus HOM05D005991 ORTHO05D007408 1.3e-41 174.1 238 50.0
CANSAT78G1707 Cannabis sativa HOM05D005991 ORTHO05D007408 1.7e-41 173.7 244 49.6
HPP92_017296 Vanilla planifolia HOM05D005991 ORTHO05D007408 2.9e-41 172.9 244 49.2
arahy.Tifrunner.gnm1.ann1.5JMV2K Arachis hypogaea HOM05D005991 ORTHO05D007408 1.1e-40 171.0 231 52.4
Peaxi162Scf00139g00312 Petunia axillaris HOM05D005991 ORTHO05D007408 4.1e-40 169.1 229 49.3
Solyc04g074800.3 Solanum lycopersicum HOM05D005991 ORTHO05D007408 4.1e-40 169.1 230 49.1
ATR0693G149 Amborella trichopoda HOM05D005991 ORTHO05D007408 1.6e-39 167.2 227 51.5
PSO017G0870 Papaver somniferum HOM05D005991 ORTHO05D007408 5.1e-38 162.2 226 47.3
Cc00_g31090 Coffea canephora HOM05D005991 ORTHO05D007408 6.6e-38 161.8 223 49.3
PSO675G8194 Papaver somniferum HOM05D005991 ORTHO05D007408 7.3e-37 158.3 226 46.5
Cc10_g13510 Coffea canephora HOM05D005991 ORTHO05D007408 1.6e-36 157.1 248 46.0
arahy.Tifrunner.gnm1.ann1.KWD76U Arachis hypogaea HOM05D005991 ORTHO05D007408 6.8e-35 151.8 241 46.1
AUR62020284 Chenopodium quinoa HOM05D005991 ORTHO05D007408 2.2e-33 146.7 118 68.6
AUR62037721 Chenopodium quinoa HOM05D005991 ORTHO05D007408 2.9e-33 146.4 118 68.6
PGR119G0116 Punica granatum HOM05D005991 ORTHO05D007408 2.9e-33 146.4 118 66.9
Mapoly0030s0047 Marchantia polymorpha HOM05D005991 ORTHO05D007408 1.6e-31 140.6 162 51.9
SEGI_07358 Sequoiadendron giganteum HOM05D005991 ORTHO05D007408 1.7e-30 137.1 238 39.1
Cre14.g632600 Chlamydomonas reinhardtii HOM05D005991 ORTHO05D007408 2.4e-27 126.7 149 51.7
CDE05G0304 Ceratophyllum demersum HOM05D005991 ORTHO05D007408 1.1e-24 117.9 161 50.9
arahy.Tifrunner.gnm1.ann1.FWR109 Arachis hypogaea HOM05D005991 ORTHO05D007408 2.1e-23 113.6 118 60.2
CBR_g56129 Chara braunii HOM05D005991 ORTHO05D007408 1.3e-22 110.9 128 49.2
SMO203G0019 Selaginella moellendorffii HOM05D005991 ORTHO05D007408 5.6e-21 105.5 223 39.9
Pp3c5_15500 Physcomitrium patens HOM05D005991 ORTHO05D007408 2.1e-20 103.6 278 33.5
CSS0020858 Camellia sinensis var. sinensis HOM05D005991 ORTHO05D007408 1.4e-19 100.9 127 54.3
AagrBONN_evm.TU.Sc2ySwM_117.1275 Anthoceros agrestis HOM05D005991 ORTHO05D007408 2.0e-18 97.1 236 35.2
MCO08G234 Micromonas commoda HOM05D005991 ORTHO05D007408 7.4e-13 78.6 175 35.4
AL1G65220 Arabidopsis lyrata HOM05D005991 ORTHO05D007408 4.0e-11 72.8 78 62.8
PRCOL_00003370 Prasinoderma coloniale HOM05D005991 ORTHO05D007408 7.1e-08 62.0 170 34.7


User provided reference genes

Program Settings