Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung02098 Brassica carinata HOM05D007802 ORTHO05D009879 2.4e-38 161.8 85 100.0
BolC7t44562H Brassica oleracea HOM05D007802 ORTHO05D009879 2.6e-37 158.3 85 98.8
C07p40270 Brassica napus HOM05D007802 ORTHO05D009879 8.4e-36 153.3 85 96.5
BcaB02g09173 Brassica carinata HOM05D007802 ORTHO05D009879 5.6e-32 140.6 85 88.2
BraA05t19725Z Brassica rapa HOM05D007802 ORTHO05D009879 7.4e-32 140.2 86 89.5
BcaC02g11998 Brassica carinata HOM05D007802 ORTHO05D009879 9.6e-32 139.8 86 89.5
A05p07580 Brassica napus HOM05D007802 ORTHO05D009879 9.6e-32 139.8 86 89.5
BolC4t22496H Brassica oleracea HOM05D007802 ORTHO05D009879 9.6e-32 139.8 86 89.5
C04p09060 Brassica napus HOM05D007802 ORTHO05D009879 2.1e-31 138.7 86 88.4
AL4G35740 Arabidopsis lyrata HOM05D007802 ORTHO05D009879 9.0e-30 133.3 85 82.4
AT2G38465 Arabidopsis thaliana HOM05D007802 ORTHO05D009879 3.4e-29 131.3 85 80.0
Carub.0004s2044 Capsella rubella HOM05D007802 ORTHO05D009879 7.1e-27 123.6 86 77.9
Sp4g20790 Schrenkiella parvula HOM05D007802 ORTHO05D009879 1.8e-25 119.0 85 78.8
A04p29410 Brassica napus HOM05D007802 ORTHO05D009879 3.0e-25 118.2 71 87.3
Aa31LG1G14150 Aethionema arabicum HOM05D007802 ORTHO05D009879 1.9e-24 115.5 84 76.2
CARHR133150 Cardamine hirsuta HOM05D007802 ORTHO05D009879 1.9e-24 115.5 71 83.1
BcaB06g29053 Brassica carinata HOM05D007802 ORTHO05D009879 4.8e-23 110.9 71 77.5
Thhalv10017501m.g Eutrema salsugineum HOM05D007802 ORTHO05D009879 6.9e-22 107.1 71 77.5
THA.LOC104806901 Tarenaya hassleriana HOM05D007802 ORTHO05D009879 6.7e-17 90.5 71 67.6
Manes.18G057100 Manihot esculenta HOM05D007802 ORTHO05D009879 1.3e-15 86.3 78 61.5
MD08G1204900 Malus domestica HOM05D007802 ORTHO05D009879 8.2e-15 83.6 69 63.8
Cpa.g.sc21.44 Carica papaya HOM05D007802 ORTHO05D009879 1.1e-14 83.2 79 54.4
RcHm_v2.0_Chr7g0233751 Rosa chinensis HOM05D007802 ORTHO05D009879 1.4e-14 82.8 79 58.2
BcaC02g07465 Brassica carinata HOM05D007802 ORTHO05D009879 2.4e-14 82.0 83 55.4
Haze_22490 Corylus avellana HOM05D007802 ORTHO05D009879 6.9e-14 80.5 79 55.7
FvH4_4g29130 Fragaria vesca HOM05D007802 ORTHO05D009879 1.2e-13 79.7 69 63.8
FvH4_5g34160 Fragaria vesca HOM05D007802 ORTHO05D009879 1.2e-13 79.7 69 60.9
FAN12G4209 Fragaria x ananassa HOM05D007802 ORTHO05D009879 1.2e-13 79.7 69 63.8
Prupe.1G536500 Prunus persica HOM05D007802 ORTHO05D009879 1.2e-13 79.7 83 53.0
Glyma.02G216200 Glycine max HOM05D007802 ORTHO05D009879 1.5e-13 79.3 79 54.4
Dinv42589 Davidia involucrata HOM05D007802 ORTHO05D009879 3.4e-13 78.2 82 53.7
MD08G1204300 Malus domestica HOM05D007802 ORTHO05D009879 7.7e-13 77.0 70 55.7
HPP92_025782 Vanilla planifolia HOM05D007802 ORTHO05D009879 7.7e-13 77.0 66 60.6
Atru.chr13.972 Acer truncatum HOM05D007802 ORTHO05D009879 1.3e-12 76.3 71 56.3
CSS0046125 Camellia sinensis var. sinensis HOM05D007802 ORTHO05D009879 1.7e-12 75.9 73 54.8
Cfa013816 Carpinus fangiana HOM05D007802 ORTHO05D009879 1.7e-12 75.9 76 55.3
Lalb_Chr17g0344631 Lupinus albus HOM05D007802 ORTHO05D009879 1.7e-12 75.9 79 53.2
Oeu040885.1 Olea europaea HOM05D007802 ORTHO05D009879 1.7e-12 75.9 74 58.1
Medtr5g066760 Medicago truncatula HOM05D007802 ORTHO05D009879 2.9e-12 75.1 65 61.5
arahy.Tifrunner.gnm1.ann1.6VNW8E Arachis hypogaea HOM05D007802 ORTHO05D009879 3.8e-12 74.7 78 53.8
TAR628G0546 Trochodendron aralioides HOM05D007802 ORTHO05D009879 3.8e-12 74.7 68 58.8
QL09p018673 Quercus lobata HOM05D007802 ORTHO05D009879 5.0e-12 74.3 78 53.8
Sed0007651 Sechium edule HOM05D007802 ORTHO05D009879 5.0e-12 74.3 76 55.3
TPR.G38823 Trifolium pratense HOM05D007802 ORTHO05D009879 5.0e-12 74.3 64 62.5
GSVIVG01009214001 Vitis vinifera HOM05D007802 ORTHO05D009879 5.0e-12 74.3 71 56.3
Phvul.008G183400 Phaseolus vulgaris HOM05D007802 ORTHO05D009879 6.5e-12 73.9 87 50.6
Eucgr.F00437 Eucalyptus grandis HOM05D007802 ORTHO05D009879 8.5e-12 73.6 66 56.1
Nn5g29812 Nelumbo nucifera HOM05D007802 ORTHO05D009879 1.1e-11 73.2 67 56.7
Thecc.08G074100 Theobroma cacao HOM05D007802 ORTHO05D009879 1.9e-11 72.4 69 56.5
Sabra02G0086800 Salix brachista HOM05D007802 ORTHO05D009879 2.5e-11 72.0 71 53.5
MBI16_g07278_MAGBIO Magnolia biondii HOM05D007802 ORTHO05D009879 4.2e-11 71.2 68 55.9
Ca_05474_v3 Cicer arietinum L. HOM05D007802 ORTHO05D009879 5.5e-11 70.9 75 52.0
ClCG08G011540 Citrullus lanatus HOM05D007802 ORTHO05D009879 5.5e-11 70.9 67 56.7
FAN07G2104 Fragaria x ananassa HOM05D007802 ORTHO05D009879 5.5e-11 70.9 57 64.9
Ciclev10002961m.g Citrus clementina HOM05D007802 ORTHO05D009879 2.1e-10 68.9 78 50.0
AUR62019113 Chenopodium quinoa HOM05D007802 ORTHO05D009879 2.7e-10 68.6 74 54.1
Cc10_g08360 Coffea canephora HOM05D007802 ORTHO05D009879 2.7e-10 68.6 71 49.3
MELO3C011071.2 Cucumis melo HOM05D007802 ORTHO05D009879 3.6e-10 68.2 74 51.4
AUR62014370 Chenopodium quinoa HOM05D007802 ORTHO05D009879 4.6e-10 67.8 91 48.4
Solyc08g016415.1 Solanum lycopersicum HOM05D007802 ORTHO05D009879 4.6e-10 67.8 67 55.2
CiPaw.08G057300 Carya illinoinensis HOM05D007802 ORTHO05D009879 7.9e-10 67.0 73 49.3
Psat2g064360 Pisum sativum HOM05D007802 ORTHO05D009879 1.0e-09 66.6 69 50.7
FAN08G3003 Fragaria x ananassa HOM05D007802 ORTHO05D009879 1.4e-09 66.2 98 43.9
FAN18G1081 Fragaria x ananassa HOM05D007802 ORTHO05D009879 1.4e-09 66.2 98 43.9
COL.COLO4_35287 Corchorus olitorius HOM05D007802 ORTHO05D009879 2.3e-09 65.5 71 50.7
Rhsim07G0213800 Rhododendron simsii HOM05D007802 ORTHO05D009879 2.3e-09 65.5 82 45.1
arahy.Tifrunner.gnm1.ann1.J1FBU0 Arachis hypogaea HOM05D007802 ORTHO05D009879 3.9e-09 64.7 59 57.6
Sopen08g006790 Solanum pennellii HOM05D007802 ORTHO05D009879 5.1e-09 64.3 67 53.7
Gohir.D05G220800 Gossypium hirsutum HOM05D007802 ORTHO05D009879 6.7e-09 63.9 83 45.8
Gorai.009G227900 Gossypium raimondii HOM05D007802 ORTHO05D009879 6.7e-09 63.9 83 45.8
BraA04t18408Z Brassica rapa HOM05D002861 ORTHO05D003104 1.9e-08 62.4 43 74.4
CANSAT78G0113 Cannabis sativa HOM05D007802 ORTHO05D009879 1.9e-08 62.4 67 50.7
TWI56G1155 Tripterygium wilfordii HOM05D007802 ORTHO05D009879 1.9e-08 62.4 76 44.7
Glyma.14G183300 Glycine max HOM05D007802 ORTHO05D009879 4.3e-08 61.2 44 68.2
SalBow7G0598 Salvia bowleyana HOM05D007802 ORTHO05D009879 4.3e-08 61.2 72 45.8
ATR0767G120 Amborella trichopoda HOM05D007802 ORTHO05D009879 7.4e-08 60.5 72 44.4
PGR042G2061 Punica granatum HOM05D007802 ORTHO05D009879 7.4e-08 60.5 73 46.6
Gohir.A05G216600 Gossypium hirsutum HOM05D007802 ORTHO05D009879 2.2e-07 58.9 76 46.1
Nitab4.5_0001601g0070 Nicotiana tabacum HOM05D007802 ORTHO05D009879 2.2e-07 58.9 63 50.8
Nitab4.5_0003852g0060 Nicotiana tabacum HOM05D007802 ORTHO05D009879 2.2e-07 58.9 63 50.8


User provided reference genes

Program Settings