Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung02031 Brassica carinata HOM05D011782 ORTHO05D014931 2.9e-111 405.2 204 100.0
C07p43310 Brassica napus HOM05D011782 ORTHO05D014931 2.9e-82 308.9 188 86.7
BolC7t44859H Brassica oleracea HOM05D011782 ORTHO05D014931 8.1e-77 290.8 172 88.4
BcaC07g37504 Brassica carinata HOM05D011782 ORTHO05D014931 1.9e-25 120.2 76 89.5
BcaC07g37503 Brassica carinata HOM05D011782 ORTHO05D014931 6.1e-24 115.2 105 56.2
BcaB05g21956 Brassica carinata HOM05D011782 ORTHO05D014931 4.1e-20 102.4 149 44.3
BolC8t47826H Brassica oleracea HOM05D011782 ORTHO05D014931 5.3e-20 102.1 130 44.6
C09p64430 Brassica napus HOM05D011782 ORTHO05D014931 2.9e-18 96.3 153 39.2
BolC8t47827H Brassica oleracea HOM05D011782 ORTHO05D014931 9.4e-17 91.3 58 89.7
CARHR194470 Cardamine hirsuta HOM05D000568 ORTHO05D000628 8.2e-13 78.2 70 68.6
BcaB04g20343 Brassica carinata HOM05D011782 ORTHO05D014931 1.3e-10 70.9 141 40.4
BcaB08g36663 Brassica carinata HOM05D000568 ORTHO05D000628 5.0e-10 68.9 71 67.6
AL6G29820 Arabidopsis lyrata HOM05D000568 ORTHO05D000628 1.5e-09 67.4 65 66.2
BcaC03g13607 Brassica carinata HOM05D000568 ORTHO05D000628 2.7e-08 63.2 73 57.5
A02p04980 Brassica napus HOM05D000568 ORTHO05D000628 4.7e-08 62.4 66 60.6
BcaB05g24745 Brassica carinata HOM05D011782 ORTHO05D000628 6.1e-08 62.0 50 74.0
C02p10010 Brassica napus HOM05D000568 ORTHO05D000628 6.1e-08 62.0 70 57.1
BolC2t06903H Brassica oleracea HOM05D000568 ORTHO05D000628 6.1e-08 62.0 70 57.1
Carub.0006s1682 Capsella rubella HOM05D000568 ORTHO05D000628 6.1e-08 62.0 66 66.7
BraA02t05457Z Brassica rapa HOM05D000568 ORTHO05D000628 8.0e-08 61.6 67 61.2
Aa31LG5G16930 Aethionema arabicum HOM05D000568 ORTHO05D000628 1.4e-07 60.8 61 67.2
AT5G18550 Arabidopsis thaliana HOM05D000568 ORTHO05D000628 1.8e-07 60.5 65 67.7
Phvul.006G163300 Phaseolus vulgaris HOM05D000568 ORTHO05D000628 3.0e-07 59.7 51 72.5
THA.LOC104818850 Tarenaya hassleriana HOM05D000568 ORTHO05D000628 3.0e-07 59.7 65 64.6
BcaB05g23336 Brassica carinata HOM05D000568 ORTHO05D000628 5.2e-07 58.9 64 59.4
Hma1.2p1_0698F.1_g205389 Hydrangea macrophylla HOM05D000568 ORTHO05D000628 5.2e-07 58.9 51 70.6
Hma1.2p1_2251F.1_g318090 Hydrangea macrophylla HOM05D000568 ORTHO05D000628 5.2e-07 58.9 51 70.6
Lj6A671T65 Lonicera japonica HOM05D000568 ORTHO05D000628 5.2e-07 58.9 51 70.6
Rhsim04G0218900 Rhododendron simsii HOM05D000568 ORTHO05D000628 6.8e-07 58.5 51 68.6
vmacro08112 Vaccinium macrocarpon HOM05D000568 ORTHO05D000628 6.8e-07 58.5 51 68.6
VMungo0540G0868 Vigna mungo HOM05D000568 ORTHO05D000628 8.8e-07 58.2 51 70.6
BcaC05g25136 Brassica carinata HOM05D004263 ORTHO05D004931 1.2e-06 57.8 27 85.2
FAN07G1518 Fragaria x ananassa HOM05D000568 ORTHO05D000628 2.6e-06 56.6 51 68.6
Thhalv10013460m.g Eutrema salsugineum HOM05D000568 ORTHO05D000628 3.4e-06 56.2 66 56.1
CAN.G256.19 Capsicum annuum HOM05D000568 ORTHO05D018879 4.4e-06 55.8 51 66.7
Oeu044778.1 Olea europaea HOM05D000568 ORTHO05D000628 4.4e-06 55.8 51 68.6
Psat1g190000 Pisum sativum HOM05D000568 ORTHO05D000628 4.4e-06 55.8 51 68.6
Glyma.15G095500 Glycine max HOM05D000568 ORTHO05D000628 5.7e-06 55.5 51 68.6
Actinidia40246 Actinidia chinensis HOM05D000568 ORTHO05D000628 7.5e-06 55.1 74 54.1
BcaC09g49366 Brassica carinata HOM05D011782 ORTHO05D010276 7.5e-06 55.1 71 54.9
Glyma.13G217000 Glycine max HOM05D000568 ORTHO05D000628 9.8e-06 54.7 51 66.7
Sp6g25780 Schrenkiella parvula HOM05D000568 ORTHO05D000628 9.8e-06 54.7 36 83.3


User provided reference genes

Program Settings