Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung02020 Brassica carinata HOM05D005840 ORTHO05D007144 2.2e-143 512.3 264 100.0
A06p35290 Brassica napus HOM05D005840 ORTHO05D007144 3.9e-63 245.7 241 62.2
BraA06t26455Z Brassica rapa HOM05D005840 ORTHO05D007144 8.6e-63 244.6 248 60.5
BcaNung01236 Brassica carinata HOM05D005840 ORTHO05D007144 3.6e-61 239.2 237 61.6
BcaB04g19821 Brassica carinata HOM05D005840 ORTHO05D007144 2.0e-59 233.4 126 94.4
C07p43220 Brassica napus HOM05D005840 ORTHO05D007144 2.0e-59 233.4 126 94.4
Sp2g22870 Schrenkiella parvula HOM05D005840 ORTHO05D007144 2.6e-59 233.0 240 57.5
Thhalv10005309m.g Eutrema salsugineum HOM05D005840 ORTHO05D007144 1.9e-57 226.9 240 55.8
AL6G36040 Arabidopsis lyrata HOM05D005840 ORTHO05D007144 3.2e-57 226.1 237 56.1
CARHR188950 Cardamine hirsuta HOM05D005840 ORTHO05D007144 7.1e-57 224.9 240 53.8
BraA09t36291Z Brassica rapa HOM05D005840 ORTHO05D007144 1.2e-56 224.2 241 53.9
A09p06480 Brassica napus HOM05D005840 ORTHO05D007144 3.5e-56 222.6 241 53.5
BolC9t53635H Brassica oleracea HOM05D005840 ORTHO05D007144 7.8e-56 221.5 238 53.8
AT5G24460 Arabidopsis thaliana HOM05D005840 ORTHO05D007144 3.9e-55 219.2 241 52.7
Carub.0006s2229 Capsella rubella HOM05D005840 ORTHO05D007144 1.1e-54 217.6 237 54.9
BcaC04g23543 Brassica carinata HOM05D005840 ORTHO05D007144 7.3e-54 214.9 241 51.9
C09p07230 Brassica napus HOM05D005840 ORTHO05D007144 7.3e-54 214.9 241 51.9
Aa31LG11G3710 Aethionema arabicum HOM05D005840 ORTHO05D007144 1.1e-52 211.1 236 53.8
THA.LOC104798983 Tarenaya hassleriana HOM05D005840 ORTHO05D007144 1.9e-46 190.3 238 52.1
PGR042G3207 Punica granatum HOM05D005840 ORTHO05D007144 1.7e-42 177.2 126 70.6
BcaB04g19819 Brassica carinata HOM05D005840 ORTHO05D007144 1.4e-41 174.1 126 69.8
Manes.01G043400 Manihot esculenta HOM05D005840 ORTHO05D007144 1.7e-39 167.2 170 55.9
Cpa.g.sc3.150 Carica papaya HOM05D005840 ORTHO05D007144 3.0e-39 166.4 129 64.3
Thecc.03G209000 Theobroma cacao HOM05D005840 ORTHO05D007144 3.9e-39 166.0 173 54.9
CiPaw.06G041000 Carya illinoinensis HOM05D005840 ORTHO05D007144 6.6e-39 165.2 131 64.1
Duzib084G0063 Durio zibethinus HOM05D005840 ORTHO05D007144 6.6e-39 165.2 193 50.8
Haze_00300 Corylus avellana HOM05D005840 ORTHO05D007144 8.7e-39 164.9 139 61.9
COL.COLO4_14373 Corchorus olitorius HOM05D005840 ORTHO05D007144 1.5e-38 164.1 126 66.7
Medtr3g092810 Medicago truncatula HOM05D005840 ORTHO05D007144 1.5e-38 164.1 126 65.1
Atru.chr12.2435 Acer truncatum HOM05D005840 ORTHO05D007144 5.6e-38 162.2 126 66.7
Ciclev10021557m.g Citrus clementina HOM05D005840 ORTHO05D007144 7.3e-38 161.8 126 65.1
TWI14G0550 Tripterygium wilfordii HOM05D005840 ORTHO05D007144 1.6e-37 160.6 126 62.7
Lalb_Chr08g0239571 Lupinus albus HOM05D005840 ORTHO05D007144 3.6e-37 159.5 178 56.2
TPR.G33360 Trifolium pratense HOM05D005840 ORTHO05D007144 3.6e-37 159.5 126 65.1
Gohir.D11G016500 Gossypium hirsutum HOM05D005840 ORTHO05D007144 6.2e-37 158.7 126 64.3
Gorai.007G017300 Gossypium raimondii HOM05D005840 ORTHO05D007144 6.2e-37 158.7 126 64.3
QL09p007163 Quercus lobata HOM05D005840 ORTHO05D007144 6.2e-37 158.7 126 62.7
Gohir.A11G016700 Gossypium hirsutum HOM05D005840 ORTHO05D007144 1.1e-36 157.9 126 62.7
Gohir.A08G104700 Gossypium hirsutum HOM05D005840 ORTHO05D007144 1.4e-36 157.5 136 59.6
Gorai.004G125300 Gossypium raimondii HOM05D005840 ORTHO05D007144 2.4e-36 156.8 136 59.6
TAR375G0732 Trochodendron aralioides HOM05D005840 ORTHO05D007144 3.1e-36 156.4 204 50.0
RcHm_v2.0_Chr1g0382901 Rosa chinensis HOM05D005840 ORTHO05D007144 4.0e-36 156.0 128 66.4
Psat5g071840 Pisum sativum HOM05D005840 ORTHO05D007144 5.3e-36 155.6 126 62.7
PSO063G5360 Papaver somniferum HOM05D005840 ORTHO05D007144 6.9e-36 155.2 126 63.5
CSS0020402 Camellia sinensis var. sinensis HOM05D005840 ORTHO05D007144 1.5e-35 154.1 126 61.9
Dinv35383 Davidia involucrata HOM05D005840 ORTHO05D007144 1.5e-35 154.1 129 62.8
MD01G1228500 Malus domestica HOM05D005840 ORTHO05D007144 1.5e-35 154.1 126 63.5
PSO782G2283 Papaver somniferum HOM05D005840 ORTHO05D007144 1.5e-35 154.1 126 62.7
PGSC0003DMG400000562 Solanum tuberosum HOM05D005840 ORTHO05D007144 1.5e-35 154.1 129 62.0
ClCG01G000060 Citrullus lanatus HOM05D005840 ORTHO05D007144 2.0e-35 153.7 126 57.1
CAN.G303.23 Capsicum annuum HOM05D005840 ORTHO05D007144 3.4e-35 152.9 126 62.7
Sopen03g021950 Solanum pennellii HOM05D005840 ORTHO05D007144 3.4e-35 152.9 129 63.6
Solyc03g081220.1 Solanum lycopersicum HOM05D005840 ORTHO05D007144 5.8e-35 152.1 176 52.3
Actinidia34271 Actinidia chinensis HOM05D005840 ORTHO05D007144 9.9e-35 151.4 126 60.3
DCAR_008987 Daucus carota HOM05D005840 ORTHO05D007144 9.9e-35 151.4 236 41.5
FvH4_7g32940 Fragaria vesca HOM05D005840 ORTHO05D007144 9.9e-35 151.4 188 50.5
ECA232G4892 Erigeron canadensis HOM05D005840 ORTHO05D007144 1.3e-34 151.0 139 56.8
Ca_16781_v3 Cicer arietinum L. HOM05D005840 ORTHO05D007144 1.7e-34 150.6 126 62.7
Lalb_Chr23g0271941 Lupinus albus HOM05D005840 ORTHO05D007144 1.7e-34 150.6 127 63.0
Peaxi162Scf00912g10012 Petunia axillaris HOM05D005840 ORTHO05D007144 2.2e-34 150.2 126 62.7
Sed0003210 Sechium edule HOM05D005840 ORTHO05D007144 2.2e-34 150.2 135 58.5
Lsat_1_v5_gn_2_135020 Lactuca sativa HOM05D005840 ORTHO05D007144 3.8e-34 149.4 128 61.7
Lj1g0001826 Lotus japonicus HOM05D005840 ORTHO05D007144 3.8e-34 149.4 137 60.6
MD07G1299300 Malus domestica HOM05D005840 ORTHO05D007144 4.9e-34 149.1 126 61.9
Nn3g18788 Nelumbo nucifera HOM05D005840 ORTHO05D007144 4.9e-34 149.1 214 45.3
FAN10G0422 Fragaria x ananassa HOM05D005840 ORTHO05D007144 6.4e-34 148.7 126 63.5
FAN10G3655 Fragaria x ananassa HOM05D005840 ORTHO05D007144 6.4e-34 148.7 126 63.5
FAN01G0139 Fragaria x ananassa HOM05D005840 ORTHO05D007144 8.4e-34 148.3 126 63.5
Potri.015G002500 Populus trichocarpa HOM05D005840 ORTHO05D007144 1.1e-33 147.9 126 58.7
Glyma.06G136800 Glycine max HOM05D005840 ORTHO05D007144 1.4e-33 147.5 129 61.2
Nitab4.5_0010809g0010 Nicotiana tabacum HOM05D005840 ORTHO05D007144 1.4e-33 147.5 126 62.7
Prupe.2G319100 Prunus persica HOM05D005840 ORTHO05D007144 1.4e-33 147.5 230 44.8
Glyma.04G228100 Glycine max HOM05D005840 ORTHO05D007144 2.4e-33 146.7 131 60.3
Nitab4.5_0000319g0020 Nicotiana tabacum HOM05D005840 ORTHO05D007144 3.2e-33 146.4 126 61.9
Oeu055391.1 Olea europaea HOM05D005840 ORTHO05D007144 3.2e-33 146.4 135 58.5
Sabra15G0001600 Salix brachista HOM05D005840 ORTHO05D007144 3.2e-33 146.4 175 48.6
CANSAT21G1965 Cannabis sativa HOM05D005840 ORTHO05D007144 4.2e-33 146.0 225 43.6
HanXRQChr10g0305331 Helianthus annuus HOM05D005840 ORTHO05D007144 4.2e-33 146.0 127 61.4
Lsat_1_v5_gn_9_49980 Lactuca sativa HOM05D005840 ORTHO05D007144 4.2e-33 146.0 132 59.8
FAN03G2485 Fragaria x ananassa HOM05D005840 ORTHO05D007144 5.4e-33 145.6 216 46.3
Rhsim03G0215700 Rhododendron simsii HOM05D005840 ORTHO05D007144 7.1e-33 145.2 130 60.0
VMungo1309G2416 Vigna mungo HOM05D005840 ORTHO05D007144 7.1e-33 145.2 129 59.7
MBI12_g45814_MAGBIO Magnolia biondii HOM05D005840 ORTHO05D007144 9.3e-33 144.8 184 47.8
Oeu023690.1 Olea europaea HOM05D005840 ORTHO05D007144 9.3e-33 144.8 188 48.4
Hma1.2p1_0094F.1_g047400 Hydrangea macrophylla HOM05D005840 ORTHO05D007144 1.6e-32 144.1 179 49.7
Lj3P895T18 Lonicera japonica HOM05D005840 ORTHO05D007144 2.1e-32 143.7 126 57.9
MSTRG.26975 Avicennia marina HOM05D005840 ORTHO05D007144 2.7e-32 143.3 204 43.6
CsaV3_5G000100 Cucumis sativus L. HOM05D005840 ORTHO05D007144 2.7e-32 143.3 120 56.7
Cc02_g00800 Coffea canephora HOM05D005840 ORTHO05D007144 3.5e-32 142.9 192 48.4
unitig_0.g2444 Utricularia gibba HOM05D005840 ORTHO05D007144 6.0e-32 142.1 139 52.5
MELO3C005919.2 Cucumis melo HOM05D005840 ORTHO05D007144 7.9e-32 141.7 122 54.9
Phvul.009G044800 Phaseolus vulgaris HOM05D005840 ORTHO05D007144 7.9e-32 141.7 129 58.1
unitig_92.g28240 Utricularia gibba HOM05D005840 ORTHO05D007144 7.9e-32 141.7 136 57.4
MSTRG.8611 Avicennia marina HOM05D005840 ORTHO05D007144 1.3e-31 141.0 141 53.9
Migut.F00150 Erythranthe guttata HOM05D005840 ORTHO05D007144 1.3e-31 141.0 138 54.3
Ah.13g070770 Amaranthus hybridus HOM05D005840 ORTHO05D007144 1.7e-31 140.6 244 38.1
Aqoxy6G02459 Aquilegia oxysepala HOM05D005840 ORTHO05D007144 2.3e-31 140.2 130 58.5
Aqoxy6G02489 Aquilegia oxysepala HOM05D005840 ORTHO05D007144 2.3e-31 140.2 130 58.5
BolC7t44847H Brassica oleracea HOM05D005840 ORTHO05D105192 5.1e-31 139.0 107 76.6
unitig_37.g11995 Utricularia gibba HOM05D005840 ORTHO05D007144 2.5e-30 136.7 134 55.2
AUR62028079 Chenopodium quinoa HOM05D005840 ORTHO05D007144 3.3e-30 136.3 208 41.8
Sc19g0000580 Simmondsia chinensis HOM05D005840 ORTHO05D007144 3.3e-30 136.3 215 40.5
EL10Ac3g05171 Beta vulgaris HOM05D005840 ORTHO05D007144 7.4e-30 135.2 133 52.6
Cc11_g13290 Coffea canephora HOM05D005840 ORTHO05D007144 7.4e-30 135.2 204 45.1
CDE04G1956 Ceratophyllum demersum HOM05D005840 ORTHO05D007144 1.6e-29 134.0 126 54.8
SGA_v2.0_scaffold18G08468 Striga asiatica HOM05D005840 ORTHO05D007144 2.1e-29 133.7 130 58.5
SalBow6G2506 Salvia bowleyana HOM05D005840 ORTHO05D007144 4.8e-29 132.5 198 43.9
AUR62005991 Chenopodium quinoa HOM05D005840 ORTHO05D007144 6.2e-29 132.1 208 42.8
CDE12G0905 Ceratophyllum demersum HOM05D005840 ORTHO05D007144 1.8e-28 130.6 189 43.4
Sed0025728 Sechium edule HOM05D005840 ORTHO05D007144 4.0e-28 129.4 129 54.3
HPP92_022381 Vanilla planifolia HOM05D005840 ORTHO05D007144 7.6e-27 125.2 150 50.0
ATR0661G235 Amborella trichopoda HOM05D005840 ORTHO05D007144 1.7e-26 124.0 158 46.8
SHI02291 Sapria himalayana HOM05D005840 ORTHO05D007144 2.9e-26 123.2 125 52.8
SEGI_38224 Sequoiadendron giganteum HOM05D005840 ORTHO05D007144 7.1e-25 118.6 124 46.8
vmacro06444 Vaccinium macrocarpon HOM05D005840 ORTHO05D007144 1.0e-23 114.8 183 41.5
vmacro22785 Vaccinium macrocarpon HOM05D005840 ORTHO05D007144 1.8e-23 114.0 250 37.2
Actinidia08699 Actinidia chinensis HOM05D005840 ORTHO05D007144 7.4e-22 108.6 126 48.4
SMO140G0013 Selaginella moellendorffii HOM05D005840 ORTHO05D007144 1.3e-21 107.8 124 46.0
Mapoly0031s0111 Marchantia polymorpha HOM05D005840 ORTHO05D007144 3.7e-21 106.3 162 39.5
Pp3c3_29470 Physcomitrium patens HOM05D005840 ORTHO05D007144 1.1e-20 104.8 133 43.6
CBR_g20004 Chara braunii HOM05D005840 ORTHO05D007144 4.5e-19 99.4 125 44.8
COL.COLO4_12096 Corchorus olitorius HOM05D005840 ORTHO05D007144 4.5e-19 99.4 113 49.6
COL.COLO4_35601 Corchorus olitorius HOM05D005840 ORTHO05D007144 3.8e-18 96.3 129 42.6
Zm00001eb272540 Zea mays HOM05D005840 ORTHO05D007144 3.2e-17 93.2 192 41.7
CAN.G2.4 Capsicum annuum HOM05D005840 ORTHO05D007144 6.0e-16 89.0 78 57.7
Os06g0712200 Oryza sativa ssp. japonica HOM05D005840 ORTHO05D007144 1.3e-15 87.8 139 44.6
BcaB04g19822 Brassica carinata HOM05D005840 ORTHO05D007144 1.5e-14 84.3 57 73.7
Duzib114G0266 Durio zibethinus HOM05D005840 ORTHO05D007144 3.9e-07 59.7 81 40.7
Cre01.g012300 Chlamydomonas reinhardtii HOM05D005840 ORTHO05D007144 5.1e-07 59.3 128 35.2
MCO06G087 Micromonas commoda HOM05D005840 ORTHO05D007144 4.3e-06 56.2 128 32.8


User provided reference genes

Program Settings