Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung02004 Brassica carinata HOM05D003381 ORTHO05D003880 3.3e-41 171.4 94 100.0
C07p43060 Brassica napus HOM05D003381 ORTHO05D003880 3.3e-41 171.4 94 100.0
BolC7t44833H Brassica oleracea HOM05D003381 ORTHO05D003880 3.3e-41 171.4 94 100.0
A06p35480 Brassica napus HOM05D003381 ORTHO05D003880 3.6e-40 167.9 94 97.9
BraA06t26471Z Brassica rapa HOM05D003381 ORTHO05D003880 3.6e-40 167.9 94 97.9
Sp2g22730 Schrenkiella parvula HOM05D003381 ORTHO05D003880 1.3e-37 159.5 97 91.8
Carub.0006s2252 Capsella rubella HOM05D003381 ORTHO05D003880 2.2e-37 158.7 94 90.4
Thhalv10005368m.g Eutrema salsugineum HOM05D003381 ORTHO05D003880 3.8e-37 157.9 97 90.7
AT5G24660 Arabidopsis thaliana HOM05D003381 ORTHO05D003880 1.2e-35 152.9 95 89.5
AL6G36270 Arabidopsis lyrata HOM05D003381 ORTHO05D003880 2.7e-35 151.8 95 88.4
CARHR188800 Cardamine hirsuta HOM05D003381 ORTHO05D003880 3.5e-35 151.4 88 90.9
AT5G24655 Arabidopsis thaliana HOM05D003381 ORTHO05D003880 8.7e-34 146.7 94 86.2
BcaC03g17951 Brassica carinata HOM05D003381 ORTHO05D003880 1.9e-33 145.6 100 84.0
BolC2t12066H Brassica oleracea HOM05D003381 ORTHO05D003880 1.9e-33 145.6 100 84.0
C02p60110 Brassica napus HOM05D003381 ORTHO05D003880 4.3e-33 144.4 100 83.0
BraA02t08981Z Brassica rapa HOM05D003381 ORTHO05D003880 4.3e-33 144.4 100 83.0
AL6G36260 Arabidopsis lyrata HOM05D003381 ORTHO05D003880 5.6e-33 144.1 94 85.1
Aa31LG11G3910 Aethionema arabicum HOM05D003381 ORTHO05D003880 9.6e-33 143.3 88 86.4
Carub.0006s2251 Capsella rubella HOM05D003381 ORTHO05D003880 4.0e-31 137.9 97 84.5
Sp5g12540 Schrenkiella parvula HOM05D003381 ORTHO05D003880 1.5e-30 136.0 92 80.4
AT3G49570 Arabidopsis thaliana HOM05D003381 ORTHO05D003880 2.6e-30 135.2 90 77.8
BolC8t50073H Brassica oleracea HOM05D003381 ORTHO05D003880 9.9e-30 133.3 90 77.8
Carub.0005s1590 Capsella rubella HOM05D003381 ORTHO05D003880 1.7e-29 132.5 91 78.0
BcaC07g39418 Brassica carinata HOM05D003381 ORTHO05D003880 4.9e-29 131.0 90 75.6
A06p18190 Brassica napus HOM05D003381 ORTHO05D003880 4.9e-29 131.0 90 75.6
BraA06t24903Z Brassica rapa HOM05D003381 ORTHO05D003880 4.9e-29 131.0 90 75.6
AL5G29410 Arabidopsis lyrata HOM05D003381 ORTHO05D003880 6.4e-29 130.6 90 74.4
BcaC07g39419 Brassica carinata HOM05D003381 ORTHO05D003880 1.8e-26 122.5 85 72.9
CARHR158590 Cardamine hirsuta HOM05D003381 ORTHO05D003880 3.0e-26 121.7 92 68.5
CARHR158580 Cardamine hirsuta HOM05D003381 ORTHO05D003880 5.1e-26 120.9 90 71.1
Carub.0005s1591 Capsella rubella HOM05D003381 ORTHO05D003880 4.3e-25 117.9 92 68.5
Thhalv10010815m.g Eutrema salsugineum HOM05D003381 ORTHO05D003880 4.3e-25 117.9 82 76.8
AL5G29420 Arabidopsis lyrata HOM05D003381 ORTHO05D003880 5.6e-25 117.5 92 67.4
BcaC07g39421 Brassica carinata HOM05D003381 ORTHO05D003880 1.3e-24 116.3 92 66.3
Sp5g12530 Schrenkiella parvula HOM05D003381 ORTHO05D003880 4.8e-24 114.4 92 63.0
A06p18160 Brassica napus HOM05D003381 ORTHO05D003880 6.2e-24 114.0 92 64.1
BcaB01g00694 Brassica carinata HOM05D003381 ORTHO05D003880 1.8e-23 112.5 85 68.2
THA.LOC104798994 Tarenaya hassleriana HOM05D003381 ORTHO05D003880 5.3e-23 110.9 75 78.7
A02p40150 Brassica napus HOM05D003381 ORTHO05D003880 1.0e-21 106.7 68 88.2
C08p24550 Brassica napus HOM05D003381 ORTHO05D003880 1.7e-21 105.9 83 67.5
BolC8t50074H Brassica oleracea HOM05D003381 ORTHO05D003880 1.7e-21 105.9 83 67.5
Aa31LG4G18060 Aethionema arabicum HOM05D003381 ORTHO05D003880 7.9e-19 97.1 85 63.5
BcaC09g49963 Brassica carinata HOM05D003381 ORTHO05D003880 2.3e-18 95.5 62 80.6
AT3G49580 Arabidopsis thaliana HOM05D003381 ORTHO05D003880 2.2e-13 79.0 67 64.2
unitig_60.g25635 Utricularia gibba HOM05D003381 ORTHO05D003880 3.8e-13 78.2 78 59.0
Atru.chr12.2499 Acer truncatum HOM05D003381 ORTHO05D003880 1.1e-12 76.6 78 53.8
Atru.chr12.2523 Acer truncatum HOM05D003381 ORTHO05D003880 1.1e-12 76.6 78 53.8
Ca_16840_v3 Cicer arietinum L. HOM05D003381 ORTHO05D003880 1.4e-12 76.3 94 48.9
CAN.G303.62 Capsicum annuum HOM05D003381 ORTHO05D003880 4.2e-12 74.7 80 53.8
Cpa.g.sc3.189 Carica papaya HOM05D003381 ORTHO05D003880 4.2e-12 74.7 73 57.5
Sopen06g029340 Solanum pennellii HOM05D003381 ORTHO05D003880 9.4e-12 73.6 86 50.0
Hma1.2p1_0115F.1_g055840 Hydrangea macrophylla HOM05D003381 ORTHO05D003880 1.2e-11 73.2 88 51.1
Peaxi162Scf00007g00254 Petunia axillaris HOM05D003381 ORTHO05D003880 1.2e-11 73.2 77 50.6
TWI81G0192 Tripterygium wilfordii HOM05D003381 ORTHO05D003880 1.2e-11 73.2 76 57.9
AUR62005946 Chenopodium quinoa HOM05D003381 ORTHO05D003880 1.6e-11 72.8 81 50.6
TPR.G35911 Trifolium pratense HOM05D003381 ORTHO05D003880 2.1e-11 72.4 92 48.9
Lj1g0021256 Lotus japonicus HOM05D003381 ORTHO05D003880 2.7e-11 72.0 92 47.8
Lalb_Chr08g0239391 Lupinus albus HOM05D003381 ORTHO05D003880 2.7e-11 72.0 78 50.0
Potri.012G004500 Populus trichocarpa HOM05D003381 ORTHO05D003880 2.7e-11 72.0 83 53.0
Potri.015G000500 Populus trichocarpa HOM05D003381 ORTHO05D003880 2.7e-11 72.0 74 56.8
Gohir.A08G106600 Gossypium hirsutum HOM05D003381 ORTHO05D003880 4.6e-11 71.2 83 54.2
Nitab4.5_0007121g0010 Nicotiana tabacum HOM05D003381 ORTHO05D003880 4.6e-11 71.2 80 51.2
Sed0013785 Sechium edule HOM05D003381 ORTHO05D003880 6.1e-11 70.9 76 53.9
Medtr3g093400 Medicago truncatula HOM05D003381 ORTHO05D003880 7.9e-11 70.5 96 46.9
Sabra15G0000300 Salix brachista HOM05D003381 ORTHO05D003880 7.9e-11 70.5 74 55.4
HanXRQChr08g0225861 Helianthus annuus HOM05D003381 ORTHO05D003880 1.0e-10 70.1 82 51.2
Phvul.009G040500 Phaseolus vulgaris HOM05D003381 ORTHO05D003880 1.0e-10 70.1 78 51.3
Psat5g070560 Pisum sativum HOM05D003381 ORTHO05D003880 1.0e-10 70.1 89 50.6
Dinv17275 Davidia involucrata HOM05D003381 ORTHO05D003880 1.8e-10 69.3 86 47.7
Manes.01G002300 Manihot esculenta HOM05D003381 ORTHO05D003880 1.8e-10 69.3 84 48.8
Psat5g070520 Pisum sativum HOM05D003381 ORTHO05D003880 1.8e-10 69.3 94 45.7
CANSAT21G1431 Cannabis sativa HOM05D003381 ORTHO05D003880 2.3e-10 68.9 69 55.1
Sabra12G0000400 Salix brachista HOM05D003381 ORTHO05D003880 2.3e-10 68.9 74 54.1
Sopen03g027490 Solanum pennellii HOM05D003381 ORTHO05D003880 2.3e-10 68.9 80 51.2
CSS0002942 Camellia sinensis var. sinensis HOM05D003381 ORTHO05D003880 3.0e-10 68.6 104 49.0
Solyc03g096760.1 Solanum lycopersicum HOM05D003381 ORTHO05D003880 3.0e-10 68.6 80 51.2
CSS0005275 Camellia sinensis var. sinensis HOM05D003381 ORTHO05D003880 3.9e-10 68.2 73 53.4
Migut.F00121 Erythranthe guttata HOM05D003381 ORTHO05D003880 3.9e-10 68.2 73 50.7
MSTRG.26951 Avicennia marina HOM05D003381 ORTHO05D003880 5.1e-10 67.8 75 49.3
Lalb_Chr10g0102971 Lupinus albus HOM05D003381 ORTHO05D003880 5.1e-10 67.8 78 48.7
Lalb_Chr11g0067571 Lupinus albus HOM05D003381 ORTHO05D003880 5.1e-10 67.8 75 49.3
Dinv29190 Davidia involucrata HOM05D003381 ORTHO05D003880 8.8e-10 67.0 68 54.4
PGSC0003DMG400027025 Solanum tuberosum HOM05D003381 ORTHO05D003880 1.1e-09 66.6 77 49.4
AUR62028119 Chenopodium quinoa HOM05D003381 ORTHO05D003880 1.5e-09 66.2 91 46.2
Glyma.06G139300 Glycine max HOM05D003381 ORTHO05D003880 1.5e-09 66.2 78 50.0
HanXRQChr08g0225881 Helianthus annuus HOM05D003381 ORTHO05D003880 1.5e-09 66.2 82 48.8
Prupe.2G322300 Prunus persica HOM05D003381 ORTHO05D003880 1.5e-09 66.2 100 48.0
HanXRQChr08g0225771 Helianthus annuus HOM05D003381 ORTHO05D003880 2.0e-09 65.9 79 48.1
HanXRQChr08g0225851 Helianthus annuus HOM05D003381 ORTHO05D003880 2.0e-09 65.9 79 48.1
Peaxi162Scf00685g10014 Petunia axillaris HOM05D003381 ORTHO05D003880 2.0e-09 65.9 52 59.6
ClCG01G000030 Citrullus lanatus HOM05D003381 ORTHO05D003880 2.5e-09 65.5 74 52.7
Lalb_Chr04g0252571 Lupinus albus HOM05D003381 ORTHO05D003880 2.5e-09 65.5 78 47.4
Solyc03g096780.1 Solanum lycopersicum HOM05D003381 ORTHO05D003880 2.5e-09 65.5 80 51.2
Sopen03g027500 Solanum pennellii HOM05D003381 ORTHO05D003880 2.5e-09 65.5 82 50.0
Sopen03g027520 Solanum pennellii HOM05D003381 ORTHO05D003880 2.5e-09 65.5 80 51.2
PGSC0003DMG400000545 Solanum tuberosum HOM05D003381 ORTHO05D003880 2.5e-09 65.5 80 51.2
TWI81G0266 Tripterygium wilfordii HOM05D003381 ORTHO05D003880 2.5e-09 65.5 76 53.9
Peaxi162Scf00815g00116 Petunia axillaris HOM05D003381 ORTHO05D003880 3.3e-09 65.1 80 51.2
Nitab4.5_0002691g0080 Nicotiana tabacum HOM05D003381 ORTHO05D003880 4.3e-09 64.7 80 48.8
SGA_v2.0_scaffold351G49675 Striga asiatica HOM05D003381 ORTHO05D003880 4.3e-09 64.7 75 49.3
CANSAT21G0934 Cannabis sativa HOM05D003381 ORTHO05D003880 5.7e-09 64.3 69 50.7
COL.COLO4_14402 Corchorus olitorius HOM05D003381 ORTHO05D003880 7.4e-09 63.9 53 60.4
Gohir.A08G106800 Gossypium hirsutum HOM05D003381 ORTHO05D003880 7.4e-09 63.9 86 50.0
RcHm_v2.0_Chr1g0383321 Rosa chinensis HOM05D003381 ORTHO05D003880 7.4e-09 63.9 69 53.6
CAN.G303.61 Capsicum annuum HOM05D003381 ORTHO05D003880 9.7e-09 63.5 77 53.2
Ciclev10022951m.g Citrus clementina HOM05D003381 ORTHO05D003880 9.7e-09 63.5 84 47.6
Haze_00337 Corylus avellana HOM05D003381 ORTHO05D003880 9.7e-09 63.5 74 48.6
FAN10G2693 Fragaria x ananassa HOM05D003381 ORTHO05D003880 9.7e-09 63.5 69 52.2
FAN10G4285 Fragaria x ananassa HOM05D003381 ORTHO05D003880 9.7e-09 63.5 69 52.2
Cc02_g00580 Coffea canephora HOM05D003381 ORTHO05D003880 1.3e-08 63.2 81 44.4
Gohir.D08G117850 Gossypium hirsutum HOM05D003381 ORTHO05D003880 1.3e-08 63.2 83 51.8
Gorai.004G126400 Gossypium raimondii HOM05D003381 ORTHO05D003880 1.3e-08 63.2 83 51.8
Lsat_1_v5_gn_8_4301 Lactuca sativa HOM05D003381 ORTHO05D003880 1.3e-08 63.2 46 65.2
Nitab4.5_0002691g0070 Nicotiana tabacum HOM05D003381 ORTHO05D003880 1.3e-08 63.2 80 48.8
Oeu063749.1 Olea europaea HOM05D003381 ORTHO05D003880 1.7e-08 62.8 83 48.2
TAR375G0964 Trochodendron aralioides HOM05D003381 ORTHO05D003880 1.7e-08 62.8 75 52.0
CAN.G65.142 Capsicum annuum HOM05D003381 ORTHO05D003880 2.2e-08 62.4 52 59.6
ECA233G1855 Erigeron canadensis HOM05D003381 ORTHO05D003880 2.2e-08 62.4 82 42.7
Glyma.04G225500 Glycine max HOM05D003381 ORTHO05D003880 2.2e-08 62.4 78 48.7
Actinidia34289 Actinidia chinensis HOM05D003381 ORTHO05D003880 2.8e-08 62.0 73 52.1
DCAR_010556 Daucus carota HOM05D003381 ORTHO05D003880 2.8e-08 62.0 91 45.1
Gohir.D08G117900 Gossypium hirsutum HOM05D003381 ORTHO05D003880 2.8e-08 62.0 86 48.8
Gorai.004G126500 Gossypium raimondii HOM05D003381 ORTHO05D003880 2.8e-08 62.0 86 48.8
Migut.F00966 Erythranthe guttata HOM05D003381 ORTHO05D003880 3.7e-08 61.6 85 43.5
FAN03G2343 Fragaria x ananassa HOM05D003381 ORTHO05D003880 3.7e-08 61.6 69 50.7
Glyma.14G188300 Glycine max HOM05D003381 ORTHO05D003880 3.7e-08 61.6 78 47.4
Migut.F00967 Erythranthe guttata HOM05D003381 ORTHO05D003880 4.8e-08 61.2 73 47.9
EL10Ac3g05128 Beta vulgaris HOM05D003381 ORTHO05D003880 6.3e-08 60.8 69 50.7
Zm00001eb231110 Zea mays HOM05D003381 ORTHO05D003880 6.3e-08 60.8 73 49.3
Ah.13g071060 Amaranthus hybridus HOM05D003381 ORTHO05D003880 8.2e-08 60.5 72 48.6
CsaV3_5G000160 Cucumis sativus L. HOM05D003381 ORTHO05D003880 8.2e-08 60.5 90 46.7
PGSC0003DMG400000547 Solanum tuberosum HOM05D003381 ORTHO05D003880 1.1e-07 60.1 80 50.0
Zm00001eb043810 Zea mays HOM05D003381 ORTHO05D003880 1.1e-07 60.1 79 48.1
SalBow4G2332 Salvia bowleyana HOM05D003381 ORTHO05D003880 1.4e-07 59.7 68 52.9
SpUn0007_0020 Schrenkiella parvula HOM05D003381 ORTHO05D372657 1.4e-07 59.7 34 91.2
TAR374G1397 Trochodendron aralioides HOM05D003381 ORTHO05D003880 1.4e-07 59.7 76 47.4
Oeu017357.1 Olea europaea HOM05D003381 ORTHO05D003880 1.8e-07 59.3 85 43.5
ECA232G1694 Erigeron canadensis HOM05D003381 ORTHO05D003880 2.4e-07 58.9 54 50.0
MD07G1303600 Malus domestica HOM05D003381 ORTHO05D003880 2.4e-07 58.9 80 48.8
Nitab4.5_0000115g0190 Nicotiana tabacum HOM05D003381 ORTHO05D003880 2.4e-07 58.9 80 48.8
Zm00001eb220550 Zea mays HOM05D003381 ORTHO05D003880 2.4e-07 58.9 75 49.3
Duzib084G1005 Durio zibethinus HOM05D003381 ORTHO05D003880 4.1e-07 58.2 81 46.9
AUR62005945 Chenopodium quinoa HOM05D003381 ORTHO05D003880 5.3e-07 57.8 68 48.5
Oeu055427.1 Olea europaea HOM05D003381 ORTHO05D003880 5.3e-07 57.8 52 57.7
Ah.13g071070 Amaranthus hybridus HOM05D003381 ORTHO05D003880 6.9e-07 57.4 79 40.5
Aqoxy5G04393 Aquilegia oxysepala HOM05D003381 ORTHO05D003880 6.9e-07 57.4 74 47.3
Sc14g0006700 Simmondsia chinensis HOM05D003381 ORTHO05D003880 6.9e-07 57.4 74 47.3
VMungo1309G1451 Vigna mungo HOM05D003381 ORTHO05D003880 6.9e-07 57.4 78 47.4
CiPaw.06G038100 Carya illinoinensis HOM05D003381 ORTHO05D003880 9.1e-07 57.0 43 69.8
MD01G1231600 Malus domestica HOM05D003381 ORTHO05D003880 9.1e-07 57.0 94 44.7
PSO675G1709 Papaver somniferum HOM05D003381 ORTHO05D003880 9.1e-07 57.0 89 47.2
Phvul.008G187900 Phaseolus vulgaris HOM05D003381 ORTHO05D003880 9.1e-07 57.0 78 43.6
SalBow4G1643 Salvia bowleyana HOM05D003381 ORTHO05D003880 9.1e-07 57.0 54 51.9
HanXRQChr16g0499781 Helianthus annuus HOM05D003381 ORTHO05D003880 1.2e-06 56.6 75 41.3
PSO541G0132 Papaver somniferum HOM05D003381 ORTHO05D003880 1.5e-06 56.2 76 50.0
EL10Ac3g05129 Beta vulgaris HOM05D003381 ORTHO05D003880 2.0e-06 55.8 82 40.2
QL09p005975 Quercus lobata HOM05D003381 ORTHO05D003880 2.0e-06 55.8 104 39.4
SGA_v2.0_scaffold44G16873 Striga asiatica HOM05D003381 ORTHO05D003880 2.6e-06 55.5 75 46.7
Nitab4.5_0002867g0010 Nicotiana tabacum HOM05D003381 ORTHO05D003880 3.4e-06 55.1 77 45.5
SEGI_37007 Sequoiadendron giganteum HOM05D003381 ORTHO05D003880 3.4e-06 55.1 78 47.4
PGSC0003DMG400000546 Solanum tuberosum HOM05D003381 ORTHO05D003880 3.4e-06 55.1 80 45.0
SEGI_09109 Sequoiadendron giganteum HOM05D003381 ORTHO05D003880 4.5e-06 54.7 81 45.7
Migut.F00119 Erythranthe guttata HOM05D003381 ORTHO05D003880 5.9e-06 54.3 73 42.5
Lsat_1_v5_gn_2_3421 Lactuca sativa HOM05D003381 ORTHO05D003880 5.9e-06 54.3 82 43.9
Lsat_1_v5_gn_8_4241 Lactuca sativa HOM05D003381 ORTHO05D003880 5.9e-06 54.3 49 57.1
LjContig00155g0019595 Lotus japonicus HOM05D003381 ORTHO05D003880 5.9e-06 54.3 74 47.3
Os10g0509600 Oryza sativa ssp. japonica HOM05D003381 ORTHO05D003880 5.9e-06 54.3 79 45.6
PGR142G3642 Punica granatum HOM05D003381 ORTHO05D003880 5.9e-06 54.3 78 44.9
Solyc06g072990.1 Solanum lycopersicum HOM05D003381 ORTHO05D003880 5.9e-06 54.3 87 46.0
HPP92_008910 Vanilla planifolia HOM05D003381 ORTHO05D003880 5.9e-06 54.3 74 48.6
Eucgr.K00481 Eucalyptus grandis HOM05D003381 ORTHO05D003880 7.7e-06 53.9 68 48.5
FvH4_7g33340 Fragaria vesca HOM05D003381 ORTHO05D003880 7.7e-06 53.9 89 39.3
Os02g0129800 Oryza sativa ssp. japonica HOM05D003381 ORTHO05D003880 7.7e-06 53.9 81 44.4


User provided reference genes

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