Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung01971 Brassica carinata HOM05D000008 ORTHO05D000005 2.1e-70 268.9 129 100.0
C07p63630 Brassica napus HOM05D000008 ORTHO05D000005 7.9e-62 240.4 132 90.2
BolC7t46776H Brassica oleracea HOM05D000008 ORTHO05D000005 7.9e-62 240.4 132 90.2
A06p48940 Brassica napus HOM05D000008 ORTHO05D000005 2.3e-61 238.8 132 89.4
BraA06t27762Z Brassica rapa HOM05D000008 ORTHO05D000005 2.3e-61 238.8 132 89.4
AT4G38620 Arabidopsis thaliana HOM05D000008 ORTHO05D000005 2.5e-47 192.2 129 78.3
Sp7g37160 Schrenkiella parvula HOM05D000008 ORTHO05D000005 2.5e-47 192.2 133 75.9
Thhalv10025886m.g Eutrema salsugineum HOM05D000008 ORTHO05D000005 1.0e-45 186.8 132 76.5
AL7G10510 Arabidopsis lyrata HOM05D000008 ORTHO05D000005 3.0e-45 185.3 129 76.7
Carub.0007s0049 Capsella rubella HOM05D000008 ORTHO05D000005 7.0e-42 174.1 131 74.8
CARHR294340 Cardamine hirsuta HOM05D000008 ORTHO05D000005 1.2e-41 173.3 132 72.0
BcaC01g00242 Brassica carinata HOM05D000008 ORTHO05D000005 8.0e-38 160.6 127 70.9
C03p77180 Brassica napus HOM05D000008 ORTHO05D000005 8.0e-38 160.6 127 70.9
BolC3t19972H Brassica oleracea HOM05D000008 ORTHO05D000005 8.0e-38 160.6 127 70.9
BcaB03g12213 Brassica carinata HOM05D000008 ORTHO05D000005 1.4e-37 159.8 127 70.1
Aa31LG6G16550 Aethionema arabicum HOM05D000008 ORTHO05D000005 6.8e-37 157.5 136 66.2
A08p24130 Brassica napus HOM05D000008 ORTHO05D000005 7.0e-34 147.5 128 67.2
BraA08t34368Z Brassica rapa HOM05D000008 ORTHO05D000005 1.3e-32 143.3 128 64.8
THA.LOC104824768 Tarenaya hassleriana HOM05D000008 ORTHO05D000005 5.6e-23 111.3 126 53.2
Sabra04G0116300 Salix brachista HOM05D000008 ORTHO05D000005 2.2e-11 72.8 119 41.2
Aa31LG7G15630 Aethionema arabicum HOM05D000008 ORTHO05D000005 2.9e-11 72.4 115 43.5
Sabra09G0103800 Salix brachista HOM05D000008 ORTHO05D000005 2.9e-11 72.4 130 40.0
THA.LOC104804091 Tarenaya hassleriana HOM05D000008 ORTHO05D000005 8.3e-11 70.9 108 47.2
Potri.004G174400 Populus trichocarpa HOM05D000008 ORTHO05D000005 1.1e-10 70.5 119 40.3
QL11p050026 Quercus lobata HOM05D000008 ORTHO05D000005 1.1e-10 70.5 116 43.1
CSS0040328 Camellia sinensis var. sinensis HOM05D000008 ORTHO05D000005 2.4e-10 69.3 117 44.4
TWI79G1435 Tripterygium wilfordii HOM05D000008 ORTHO05D000005 2.4e-10 69.3 118 43.2
MD10G1124100 Malus domestica HOM05D000008 ORTHO05D000005 4.1e-10 68.6 124 39.5
TWI31G0100 Tripterygium wilfordii HOM05D000008 ORTHO05D000005 5.4e-10 68.2 133 39.1
TWI75G1554 Tripterygium wilfordii HOM05D000008 ORTHO05D000005 1.2e-09 67.0 107 43.9
Hund00028 Selenicereus undatus HOM05D000008 ORTHO05D000005 1.6e-09 66.6 120 40.8
Prupe.8G164300 Prunus persica HOM05D000008 ORTHO05D000005 2.7e-09 65.9 127 37.8
COL.COLO4_17321 Corchorus olitorius HOM05D000008 ORTHO05D000005 3.5e-09 65.5 125 38.4
Duzib052G0272 Durio zibethinus HOM05D000008 ORTHO05D000005 3.5e-09 65.5 112 40.2
ClCG02G011860 Citrullus lanatus HOM05D000008 ORTHO05D000005 4.6e-09 65.1 105 41.0
CsaV3_2G016030 Cucumis sativus L. HOM05D000008 ORTHO05D000005 4.6e-09 65.1 106 41.5
Potri.009G134000 Populus trichocarpa HOM05D000008 ORTHO05D000005 4.6e-09 65.1 117 39.3
Eucgr.I01406 Eucalyptus grandis HOM05D000008 ORTHO05D000005 1.3e-08 63.5 102 44.1
Manes.11G094800 Manihot esculenta HOM05D000008 ORTHO05D000005 1.3e-08 63.5 138 37.0
Oeu034966.1 Olea europaea HOM05D000008 ORTHO05D000005 1.7e-08 63.2 105 41.0
PGR142G0807 Punica granatum HOM05D000008 ORTHO05D000005 1.7e-08 63.2 119 38.7
MD05G1120600 Malus domestica HOM05D000008 ORTHO05D000005 2.3e-08 62.8 116 39.7
TAR628G0854 Trochodendron aralioides HOM05D000008 ORTHO05D000005 3.0e-08 62.4 117 41.0
MELO3C020812.2 Cucumis melo HOM05D000008 ORTHO05D000005 3.9e-08 62.0 106 40.6
Rhsim11G0191600 Rhododendron simsii HOM05D000008 ORTHO05D000005 1.1e-07 60.5 106 40.6
DCAR_003163 Daucus carota HOM05D000008 ORTHO05D000005 1.5e-07 60.1 112 37.5
Gohir.D12G034700 Gossypium hirsutum HOM05D000008 ORTHO05D000005 1.5e-07 60.1 127 40.2
Gorai.008G035700 Gossypium raimondii HOM05D000008 ORTHO05D000005 1.5e-07 60.1 127 40.2
Nn5g30760 Nelumbo nucifera HOM05D000008 ORTHO05D000005 1.9e-07 59.7 117 38.5
Oeu006680.1 Olea europaea HOM05D000008 ORTHO05D000005 1.9e-07 59.7 105 41.0
CiPaw.06G123000 Carya illinoinensis HOM05D000008 ORTHO05D000005 3.3e-07 58.9 106 38.7
Sed0021476 Sechium edule HOM05D000008 ORTHO05D000005 3.3e-07 58.9 101 39.6
GSVIVG01024036001 Vitis vinifera HOM05D000008 ORTHO05D000005 3.3e-07 58.9 94 42.6
MSTRG.20000 Avicennia marina HOM05D000008 ORTHO05D000005 4.3e-07 58.5 106 38.7
MSTRG.27645 Avicennia marina HOM05D000008 ORTHO05D000005 4.3e-07 58.5 105 38.1
CAN.G1.56 Capsicum annuum HOM05D000008 ORTHO05D000005 4.3e-07 58.5 111 36.0
PGSC0003DMG400013215 Solanum tuberosum HOM05D000008 ORTHO05D000005 4.3e-07 58.5 130 35.4
TAR625G0174 Trochodendron aralioides HOM05D000008 ORTHO05D000005 4.3e-07 58.5 98 43.9
vmacro02272 Vaccinium macrocarpon HOM05D000008 ORTHO05D000005 4.3e-07 58.5 107 41.1
Cpa.g.sc37.149 Carica papaya HOM05D000008 ORTHO05D000005 5.6e-07 58.2 119 40.3
Nitab4.5_0000956g0010 Nicotiana tabacum HOM05D000008 ORTHO05D000005 5.6e-07 58.2 109 37.6
Nitab4.5_0001889g0060 Nicotiana tabacum HOM05D000008 ORTHO05D000005 5.6e-07 58.2 109 39.4
Actinidia20508 Actinidia chinensis HOM05D000008 ORTHO05D000005 7.3e-07 57.8 118 42.4
Sed0016334 Sechium edule HOM05D000008 ORTHO05D000005 7.3e-07 57.8 106 42.5
AT4G34990 Arabidopsis thaliana HOM05D000008 ORTHO05D000005 9.5e-07 57.4 129 37.2
BcaNung02367 Brassica carinata HOM05D000008 ORTHO05D000005 9.5e-07 57.4 129 38.0
Actinidia23591 Actinidia chinensis HOM05D000008 ORTHO05D000005 1.2e-06 57.0 120 36.7
BcaNung00640 Brassica carinata HOM05D000008 ORTHO05D000005 1.2e-06 57.0 117 38.5
Gohir.D01G158500 Gossypium hirsutum HOM05D000008 ORTHO05D000005 1.2e-06 57.0 114 36.8
Manes.04G074900 Manihot esculenta HOM05D000008 ORTHO05D000005 1.2e-06 57.0 106 39.6
PGSC0003DMG400006176 Solanum tuberosum HOM05D000008 ORTHO05D000005 1.2e-06 57.0 128 28.9
Thecc.02G061400 Theobroma cacao HOM05D000008 ORTHO05D000005 1.2e-06 57.0 127 39.4
MSTRG.5448 Avicennia marina HOM05D000008 ORTHO05D000005 1.6e-06 56.6 85 38.8
Gorai.002G196700 Gossypium raimondii HOM05D000008 ORTHO05D000005 1.6e-06 56.6 115 36.5
THA.LOC104807366 Tarenaya hassleriana HOM05D000008 ORTHO05D000005 1.6e-06 56.6 113 38.9
TAR376G0901 Trochodendron aralioides HOM05D000008 ORTHO05D000005 1.6e-06 56.6 105 40.0
ECA246G0716 Erigeron canadensis HOM05D000008 ORTHO05D000005 2.1e-06 56.2 98 38.8
Gohir.A12G037700 Gossypium hirsutum HOM05D000008 ORTHO05D000005 2.1e-06 56.2 127 38.6
Medtr4g073420 Medicago truncatula HOM05D000008 ORTHO05D000005 2.1e-06 56.2 99 41.4
Actinidia00618 Actinidia chinensis HOM05D000008 ORTHO05D000005 2.8e-06 55.8 118 37.3
CiPaw.05G081000 Carya illinoinensis HOM05D000008 ORTHO05D000005 2.8e-06 55.8 123 35.0
MELO3C013364.2 Cucumis melo HOM05D000008 ORTHO05D000005 2.8e-06 55.8 100 38.0
arahy.Tifrunner.gnm1.ann1.ZNIJ0J Arachis hypogaea HOM05D000008 ORTHO05D000005 3.6e-06 55.5 126 37.3
CANSAT25G2116 Cannabis sativa HOM05D000008 ORTHO05D000005 4.7e-06 55.1 102 41.2
Hma1.2p1_0032F.1_g019450 Hydrangea macrophylla HOM05D000008 ORTHO05D000005 4.7e-06 55.1 95 41.1
Peaxi162Scf00042g02519 Petunia axillaris HOM05D000008 ORTHO05D000005 4.7e-06 55.1 99 40.4
Thhalv10025926m.g Eutrema salsugineum HOM05D000008 ORTHO05D000005 6.2e-06 54.7 114 36.8
Gohir.A01G167300 Gossypium hirsutum HOM05D000008 ORTHO05D000005 8.1e-06 54.3 114 36.0


User provided reference genes

Program Settings