Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung01931 Brassica carinata HOM05D004021 ORTHO05D003767 0.0e+00 2013.4 1023 100.0
BcaC03g13370 Brassica carinata HOM05D004021 ORTHO05D003767 0.0e+00 1398.6 1054 75.1
C02p05090 Brassica napus HOM05D004021 ORTHO05D003767 0.0e+00 1398.6 1054 75.1
BolC2t06463H Brassica oleracea HOM05D004021 ORTHO05D003767 0.0e+00 1394.4 1054 75.0
BraA02t05084Z Brassica rapa HOM05D004021 ORTHO05D003767 0.0e+00 1388.2 1044 75.4
A02p01040 Brassica napus HOM05D004021 ORTHO05D003767 0.0e+00 1386.7 1044 75.4
Sp6g32070 Schrenkiella parvula HOM05D004021 ORTHO05D003767 0.0e+00 1370.9 1133 70.5
AL6G22200 Arabidopsis lyrata HOM05D004021 ORTHO05D003767 0.0e+00 1214.9 1132 64.3
Carub.0006s1000 Capsella rubella HOM05D004021 ORTHO05D003767 0.0e+00 1209.9 1130 64.6
AT5G11530 Arabidopsis thaliana HOM05D004021 ORTHO05D003767 0.0e+00 1171.0 1131 62.3
CARHR201690 Cardamine hirsuta HOM05D004021 ORTHO05D003767 5.0e-308 1061.2 1127 59.9
BolC3t13094H Brassica oleracea HOM05D004021 ORTHO05D003767 6.1e-298 1027.7 1086 60.0
BraA03t09842Z Brassica rapa HOM05D004021 ORTHO05D003767 2.0e-293 1012.7 1083 59.2
BcaB01g05477 Brassica carinata HOM05D004021 ORTHO05D003767 7.9e-290 1000.7 1065 58.9
Aa31LG3G15670 Aethionema arabicum HOM05D004021 ORTHO05D003767 5.9e-261 904.8 1180 51.7
THA.LOC104814779 Tarenaya hassleriana HOM05D004021 ORTHO05D003767 3.9e-212 742.7 1205 45.6
THA.LOC104799199 Tarenaya hassleriana HOM05D004021 ORTHO05D003767 1.8e-204 717.2 1212 44.9
Thhalv10015703m.g Eutrema salsugineum HOM05D004021 ORTHO05D003767 6.9e-201 705.3 1099 46.2
C03p05810 Brassica napus HOM05D000602 ORTHO05D006896 7.9e-189 665.2 694 61.0
A03p05080 Brassica napus HOM05D000602 ORTHO05D006896 1.1e-182 644.8 689 59.8
Thhalv10003568m.g Eutrema salsugineum HOM05D004021 ORTHO05D003767 2.0e-179 634.0 1144 43.7
Aa31LG11G4580 Aethionema arabicum HOM05D004021 ORTHO05D003767 5.9e-168 595.9 1112 41.0
BcaNung03924 Brassica carinata HOM05D004021 ORTHO05D003767 6.1e-149 532.7 1118 39.4
BolC7t44742H Brassica oleracea HOM05D004021 ORTHO05D003767 1.0e-148 531.9 1118 39.4
C07p42110 Brassica napus HOM05D004021 ORTHO05D003767 1.8e-148 531.2 1118 39.3
BraA06t26563Z Brassica rapa HOM05D004021 ORTHO05D003767 3.8e-143 513.5 1117 39.0
A06p36400 Brassica napus HOM05D004021 ORTHO05D003767 5.6e-142 509.6 1122 38.9
Ciclev10007267m.g Citrus clementina HOM05D004021 ORTHO05D003767 8.2e-69 266.5 1248 27.1
Thecc.09G042000 Theobroma cacao HOM05D004021 ORTHO05D003767 7.9e-64 250.0 1269 27.4
Duzib150G1483 Durio zibethinus HOM05D004021 ORTHO05D003767 9.7e-62 243.0 1304 28.0
Duzib187G0651 Durio zibethinus HOM05D004021 ORTHO05D003767 1.1e-60 239.6 1268 27.1
COL.COLO4_18677 Corchorus olitorius HOM05D004021 ORTHO05D003767 5.5e-57 227.3 1246 26.3
Gohir.A07G023000 Gossypium hirsutum HOM05D004021 ORTHO05D003767 1.0e-55 223.0 1255 26.4
Gorai.001G027600 Gossypium raimondii HOM05D004021 ORTHO05D003767 7.4e-54 216.9 1300 26.1
Potri.006G240500 Populus trichocarpa HOM05D004021 ORTHO05D003767 6.3e-53 213.8 1301 25.6
QL12p029472 Quercus lobata HOM05D004021 ORTHO05D003767 4.1e-52 211.1 1289 26.1
Gohir.A07G023100 Gossypium hirsutum HOM05D004021 ORTHO05D003767 5.9e-51 207.2 1253 27.0
Prupe.1G450900 Prunus persica HOM05D004021 ORTHO05D003767 8.5e-50 203.4 1269 25.5
Gohir.D07G026700 Gossypium hirsutum HOM05D004021 ORTHO05D003767 1.5e-49 202.6 1255 26.1
Gorai.001G027700 Gossypium raimondii HOM05D004021 ORTHO05D003767 1.9e-49 202.2 1256 26.1
FvH4_2g35880 Fragaria vesca HOM05D004021 ORTHO05D003767 3.6e-48 198.0 1258 25.8
FAN27G1714 Fragaria x ananassa HOM05D004021 ORTHO05D003767 6.1e-48 197.2 1259 25.8
Duzib168G2343 Durio zibethinus HOM05D004021 ORTHO05D003767 8.0e-48 196.8 1226 25.6
Sabra06G0188100 Salix brachista HOM05D004021 ORTHO05D003767 1.8e-47 195.7 1296 24.8
Cfa013353 Carpinus fangiana HOM05D004021 ORTHO05D003767 5.2e-47 194.1 1280 25.6
C09p65300 Brassica napus HOM05D018796 ORTHO05D023922 6.7e-47 193.7 1250 26.3
RcHm_v2.0_Chr6g0305941 Rosa chinensis HOM05D004021 ORTHO05D003767 6.7e-47 193.7 1256 25.2
FAN15G2992 Fragaria x ananassa HOM05D004021 ORTHO05D003767 6.3e-45 187.2 1262 25.2
Sabra18G0039500 Salix brachista HOM05D004021 ORTHO05D003767 2.4e-44 185.3 1298 26.0
FAN20G2231 Fragaria x ananassa HOM05D004021 ORTHO05D003767 9.1e-44 183.3 1258 24.5
Potri.018G039500 Populus trichocarpa HOM05D004021 ORTHO05D003767 1.2e-43 183.0 1301 25.2
Haze_21872 Corylus avellana HOM05D004021 ORTHO05D003767 1.6e-43 182.6 1329 25.4
CiPaw.07G205800 Carya illinoinensis HOM05D004021 ORTHO05D003767 1.7e-42 179.1 1306 25.3
Dinv14242 Davidia involucrata HOM05D004021 ORTHO05D003767 2.2e-42 178.7 1305 26.0
Manes.16G071666 Manihot esculenta HOM05D004021 ORTHO05D003767 5.0e-42 177.6 1271 24.9
BcaNung04838 Brassica carinata HOM05D004021 ORTHO05D003767 5.5e-41 174.1 300 43.0
Gohir.D07G026600 Gossypium hirsutum HOM05D004021 ORTHO05D003767 1.8e-39 169.1 1250 24.5
Lj1g0012897 Lotus japonicus HOM05D004021 ORTHO05D003767 1.8e-39 169.1 1209 25.8
CiPaw.08G024400 Carya illinoinensis HOM05D004021 ORTHO05D003767 8.8e-39 166.8 1278 24.8
TPR.G1392 Trifolium pratense HOM05D004021 ORTHO05D003767 1.1e-36 159.8 1183 25.6
BolC9t59357H Brassica oleracea HOM05D018796 ORTHO05D023922 2.5e-33 148.7 657 29.2
GSVIVG01035651001 Vitis vinifera HOM05D004021 ORTHO05D003767 3.3e-33 148.3 941 25.6
BcaC04g19217 Brassica carinata HOM05D018796 ORTHO05D023922 1.6e-32 146.0 619 29.4
Ca_15608_v3 Cicer arietinum L. HOM05D004021 ORTHO05D003767 2.1e-32 145.6 1171 25.3
TWI63G0612 Tripterygium wilfordii HOM05D004021 ORTHO05D003767 2.8e-32 145.2 1208 24.3
Glyma.04G081800 Glycine max HOM05D004021 ORTHO05D003767 1.4e-31 142.9 1196 25.3
Psat5g022840 Pisum sativum HOM05D004021 ORTHO05D003767 1.5e-30 139.4 1194 24.8
CANSAT25G3821 Cannabis sativa HOM05D004021 ORTHO05D003767 2.0e-30 139.0 1346 23.4
Medtr3g110082 Medicago truncatula HOM05D004021 ORTHO05D003767 2.6e-30 138.7 1180 25.8
A10p26230 Brassica napus HOM05D018796 ORTHO05D023922 2.8e-29 135.2 649 28.4
BraA10t44680Z Brassica rapa HOM05D018796 ORTHO05D023922 2.8e-29 135.2 649 28.4
Medtr3g110132 Medicago truncatula HOM05D004021 ORTHO05D003767 3.7e-29 134.8 1190 25.5
Psat5g022920 Pisum sativum HOM05D004021 ORTHO05D003767 6.3e-29 134.0 1210 24.8
Glyma.06G083500 Glycine max HOM05D004021 ORTHO05D003767 2.4e-28 132.1 1205 25.1
Dinv30267 Davidia involucrata HOM05D004021 ORTHO05D003767 1.2e-27 129.8 1326 23.4
Cpa.g.sc7.256 Carica papaya HOM05D004021 ORTHO05D003767 1.0e-26 126.7 373 32.2
VMungo1309G0329 Vigna mungo HOM05D004021 ORTHO05D003767 1.0e-26 126.7 1197 24.6
Lalb_Chr08g0243171 Lupinus albus HOM05D004021 ORTHO05D003767 3.9e-26 124.8 1234 24.1
MD08G1116300 Malus domestica HOM05D004021 ORTHO05D003767 7.3e-25 120.6 1222 24.1
CsaV3_3G048630 Cucumis sativus L. HOM05D004021 ORTHO05D003767 6.1e-24 117.5 1172 23.3
Lalb_Chr11g0064441 Lupinus albus HOM05D004021 ORTHO05D003767 2.3e-23 115.5 1207 24.4
PGR044G0442 Punica granatum HOM05D004021 ORTHO05D003767 5.2e-23 114.4 1254 24.1
arahy.Tifrunner.gnm1.ann1.QM1LQ0 Arachis hypogaea HOM05D004021 ORTHO05D003767 8.9e-23 113.6 1212 24.3
Phvul.009G107600 Phaseolus vulgaris HOM05D004021 ORTHO05D003767 2.0e-22 112.5 1216 23.9
MELO3C003457.2 Cucumis melo HOM05D004021 ORTHO05D003767 1.3e-21 109.8 1141 23.4
Atru.chr7.2140 Acer truncatum HOM05D004021 ORTHO05D003767 1.4e-20 106.3 790 25.8
Cpa.g.sc7.254 Carica papaya HOM05D004021 ORTHO05D003767 1.9e-20 105.9 90 54.4
Actinidia14666 Actinidia chinensis HOM05D004021 ORTHO05D003767 3.2e-20 105.1 1280 23.1
Rhsim07G0152700 Rhododendron simsii HOM05D004021 ORTHO05D003767 5.4e-20 104.4 1198 23.4
BcaB08g37050 Brassica carinata HOM05D018796 ORTHO05D003767 9.2e-20 103.6 882 25.3
DCAR_007709 Daucus carota HOM05D004021 ORTHO05D003767 9.2e-20 103.6 1054 23.5
Actinidia15734 Actinidia chinensis HOM05D004021 ORTHO05D003767 7.8e-19 100.5 1189 23.7
Lalb_Chr01g0011141 Lupinus albus HOM05D004021 ORTHO05D003767 3.9e-18 98.2 1211 23.6
Sed0007846 Sechium edule HOM05D004021 ORTHO05D003767 3.9e-18 98.2 1240 22.4
Nn3g18104 Nelumbo nucifera HOM05D004021 ORTHO05D003767 6.6e-18 97.4 1139 22.6
TAR626G0792 Trochodendron aralioides HOM05D004021 ORTHO05D003767 1.5e-17 96.3 564 26.4
Ah.10g035100 Amaranthus hybridus HOM05D012164 ORTHO05D003767 2.5e-17 95.5 1085 23.4
ClCG08G012320 Citrullus lanatus HOM05D004021 ORTHO05D003767 4.3e-17 94.7 1213 22.6
Eucgr.C02901 Eucalyptus grandis HOM05D004021 ORTHO05D003767 4.7e-16 91.3 1231 23.5
MSTRG.14021 Avicennia marina HOM05D004021 ORTHO05D003767 1.1e-15 90.1 295 31.9
CAN.G309.87 Capsicum annuum HOM05D004021 ORTHO05D003767 5.2e-15 87.8 1247 23.8
Lalb_Chr11g0064431 Lupinus albus HOM05D004021 ORTHO05D003767 6.8e-15 87.4 1156 24.0
Sopen11g028940 Solanum pennellii HOM05D004021 ORTHO05D003767 6.8e-15 87.4 1227 22.7
BcaB08g37051 Brassica carinata HOM05D018796 ORTHO05D003767 1.5e-14 86.3 387 28.9
Solyc11g071250.3 Solanum lycopersicum HOM05D004021 ORTHO05D003767 2.6e-14 85.5 1235 22.3
SalBow1G4226 Salvia bowleyana HOM05D004021 ORTHO05D003767 7.5e-14 84.0 293 30.7
SHI18661 Sapria himalayana HOM05D004021 ORTHO05D003767 7.5e-14 84.0 1013 23.5
Sed0002796 Sechium edule HOM05D004021 ORTHO05D003767 7.5e-14 84.0 1182 23.7
TAR383G0364 Trochodendron aralioides HOM05D004021 ORTHO05D003767 9.8e-14 83.6 786 24.4
Nitab4.5_0001567g0120 Nicotiana tabacum HOM05D004021 ORTHO05D003767 1.3e-13 83.2 1208 23.4
PGSC0003DMG401018585 Solanum tuberosum HOM05D004021 ORTHO05D003767 1.3e-13 83.2 1225 22.9
Atru.chr7.2139 Acer truncatum HOM05D004021 ORTHO05D003767 2.9e-13 82.0 241 34.0
CSS0009602 Camellia sinensis var. sinensis HOM05D004021 ORTHO05D003767 3.7e-13 81.6 1268 23.6
MBI01_g30860_MAGBIO Magnolia biondii HOM05D004021 ORTHO05D003767 3.7e-13 81.6 88 47.7
MSTRG.1655 Avicennia marina HOM05D004021 ORTHO05D003767 4.9e-13 81.3 289 32.2
Nn2g11674 Nelumbo nucifera HOM05D004021 ORTHO05D003767 6.4e-13 80.9 104 43.3
BcaNung04839 Brassica carinata HOM05D004021 ORTHO05D003767 1.4e-12 79.7 62 71.0
Lj4g0004076 Lotus japonicus HOM05D032889 ORTHO05D003767 1.4e-12 79.7 87 41.4
Nitab4.5_0000664g0210 Nicotiana tabacum HOM05D004021 ORTHO05D003767 1.4e-12 79.7 152 37.5
Migut.A00223 Erythranthe guttata HOM05D004021 ORTHO05D003767 1.9e-12 79.3 581 23.1
SEGI_07029 Sequoiadendron giganteum HOM05D004021 ORTHO05D003767 1.9e-12 79.3 68 48.5
Lalb_Chr24g0396931 Lupinus albus HOM05D004021 ORTHO05D003767 2.4e-12 79.0 162 29.6
CsaV3_2G030990 Cucumis sativus L. HOM05D004021 ORTHO05D003767 3.2e-12 78.6 1194 22.4
Lj8A589G31 Lonicera japonica HOM05D004021 ORTHO05D003767 7.0e-12 77.4 170 37.6
AUR62041723 Chenopodium quinoa HOM05D012164 ORTHO05D003767 2.7e-11 75.5 120 35.0
unitig_578.g16592 Utricularia gibba HOM05D004021 ORTHO05D003767 2.7e-11 75.5 101 38.6
vmacro18883 Vaccinium macrocarpon HOM05D004021 ORTHO05D003767 2.7e-11 75.5 139 36.7
unitig_26.g9789 Utricularia gibba HOM05D004021 ORTHO05D003767 3.5e-11 75.1 100 37.0
vmacro05366 Vaccinium macrocarpon HOM05D004021 ORTHO05D003767 4.6e-11 74.7 1171 21.7
Lj8A589T33 Lonicera japonica HOM05D004021 ORTHO05D003767 7.8e-11 73.9 90 46.7
MELO3C011152.2 Cucumis melo HOM05D004021 ORTHO05D003767 1.3e-10 73.2 1213 22.4
EL10Ac2g04051 Beta vulgaris HOM05D012164 ORTHO05D003767 1.7e-10 72.8 702 22.9
Lalb_Chr22g0352261 Lupinus albus HOM05D004021 ORTHO05D003767 1.7e-10 72.8 351 27.6
Peaxi162Scf00276g00210 Petunia axillaris HOM05D004021 ORTHO05D003767 1.7e-10 72.8 401 25.9
CDE05G1167 Ceratophyllum demersum HOM05D004021 ORTHO05D003767 2.3e-10 72.4 70 44.3
Nitab4.5_0001567g0150 Nicotiana tabacum HOM05D004021 ORTHO05D003767 2.3e-10 72.4 1210 22.1
Atru.chr7.2138 Acer truncatum HOM05D004021 ORTHO05D003767 3.0e-10 72.0 103 42.7
arahy.Tifrunner.gnm1.ann1.E545QA Arachis hypogaea HOM05D004021 ORTHO05D003767 3.0e-10 72.0 1130 21.0
SGA_v2.0_scaffold169G38653 Striga asiatica HOM05D004021 ORTHO05D003767 1.1e-09 70.1 332 26.5
CDE05G1483 Ceratophyllum demersum HOM05D050580 ORTHO05D003767 7.3e-09 67.4 302 23.5
AUR62009309 Chenopodium quinoa HOM05D012164 ORTHO05D003767 9.5e-09 67.0 156 32.7
Nitab4.5_0002178g0010 Nicotiana tabacum HOM05D004021 ORTHO05D003767 9.5e-09 67.0 83 42.2
CSS0003638 Camellia sinensis var. sinensis HOM05D004021 ORTHO05D003767 1.2e-08 66.6 83 41.0
Eucgr.E03518 Eucalyptus grandis HOM05D004021 ORTHO05D003767 1.2e-08 66.6 568 23.1
MD15G1096000 Malus domestica HOM05D004021 ORTHO05D003767 1.2e-08 66.6 411 26.0
Nitab4.5_0000664g0250 Nicotiana tabacum HOM05D004021 ORTHO05D003767 1.2e-08 66.6 1223 22.5
SGA_v2.0_scaffold163G38081 Striga asiatica HOM05D004021 ORTHO05D003767 1.2e-08 66.6 627 22.5
Peaxi162Scf00657g00058 Petunia axillaris HOM05D004021 ORTHO05D003767 1.6e-08 66.2 178 30.3
Ah.16g105370 Amaranthus hybridus HOM05D012164 ORTHO05D003767 2.1e-08 65.9 79 38.0
TAR626G0813 Trochodendron aralioides HOM05D004021 ORTHO05D003767 2.1e-08 65.9 276 27.2
Lsat_1_v5_gn_4_94561 Lactuca sativa HOM05D004021 ORTHO05D003767 2.8e-08 65.5 87 39.1
ECA233G1986 Erigeron canadensis HOM05D004021 ORTHO05D003767 3.6e-08 65.1 79 43.0
Hund03406 Selenicereus undatus HOM05D012164 ORTHO05D003767 3.6e-08 65.1 58 50.0
Oeu031555.1 Olea europaea HOM05D004021 ORTHO05D003767 8.1e-08 63.9 1105 22.5
ClCG11G015210 Citrullus lanatus HOM05D004021 ORTHO05D003767 1.4e-07 63.2 651 23.7
Nitab4.5_0000500g0270 Nicotiana tabacum HOM05D004021 ORTHO05D003767 2.3e-07 62.4 77 44.2
Dinv30474 Davidia involucrata HOM05D004021 ORTHO05D003767 3.1e-07 62.0 530 24.0
Oeu012193.1 Olea europaea HOM05D004021 ORTHO05D003767 5.2e-07 61.2 1106 23.1
ATR0315G010 Amborella trichopoda HOM05D004021 ORTHO05D003767 6.8e-07 60.8 198 25.8
Migut.E01516 Erythranthe guttata HOM05D004021 ORTHO05D003767 8.9e-07 60.5 598 23.7
Cc08_g09190 Coffea canephora HOM05D004021 ORTHO05D003767 3.4e-06 58.5 235 28.9
SalBow4G0344 Salvia bowleyana HOM05D004021 ORTHO05D003767 3.4e-06 58.5 1079 21.0
unitig_85.g27153 Utricularia gibba HOM05D004021 ORTHO05D003767 7.5e-06 57.4 611 23.7
Dinv38014 Davidia involucrata HOM05D004021 ORTHO05D003767 9.9e-06 57.0 543 24.3
Glyma.17G195000 Glycine max HOM05D004021 ORTHO05D003767 9.9e-06 57.0 73 42.5
Lalb_Chr14g0372341 Lupinus albus HOM05D004021 ORTHO05D003767 9.9e-06 57.0 1064 20.5


User provided reference genes

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