Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung01928 Brassica carinata HOM05D001880 ORTHO05D005098 1.2e-118 429.9 221 100.0
BcaB08g37053 Brassica carinata HOM05D001880 ORTHO05D005098 3.0e-109 398.7 221 94.1
BcaC03g13368 Brassica carinata HOM05D001880 ORTHO05D005098 6.6e-109 397.5 221 94.6
Sp6g32100 Schrenkiella parvula HOM05D001880 ORTHO05D005098 6.6e-109 397.5 221 94.1
BcaB01g05480 Brassica carinata HOM05D001880 ORTHO05D005098 1.5e-108 396.4 221 93.7
A03p05050 Brassica napus HOM05D001880 ORTHO05D005098 1.5e-108 396.4 221 93.7
C09p65340 Brassica napus HOM05D001880 ORTHO05D005098 1.5e-108 396.4 221 93.2
BraA03t09839Z Brassica rapa HOM05D001880 ORTHO05D005098 1.5e-108 396.4 221 93.7
Carub.0006s0996 Capsella rubella HOM05D001880 ORTHO05D005098 1.5e-108 396.4 221 94.1
C03p05780 Brassica napus HOM05D001880 ORTHO05D005098 1.9e-108 396.0 221 93.2
BolC3t13091H Brassica oleracea HOM05D001880 ORTHO05D005098 1.9e-108 396.0 221 93.2
A10p26250 Brassica napus HOM05D001880 ORTHO05D005098 2.5e-108 395.6 221 92.8
BraA10t44682Z Brassica rapa HOM05D001880 ORTHO05D005098 2.5e-108 395.6 221 92.8
AL6G22170 Arabidopsis lyrata HOM05D001880 ORTHO05D005098 3.3e-108 395.2 221 93.7
AT5G11500 Arabidopsis thaliana HOM05D001880 ORTHO05D005098 3.3e-108 395.2 221 93.7
BcaC04g19219 Brassica carinata HOM05D001880 ORTHO05D005098 4.3e-108 394.8 221 92.8
BolC9t59360H Brassica oleracea HOM05D001880 ORTHO05D005098 4.3e-108 394.8 221 92.8
C02p05070 Brassica napus HOM05D001880 ORTHO05D005098 5.6e-108 394.4 221 93.7
CARHR201720 Cardamine hirsuta HOM05D001880 ORTHO05D005098 9.6e-108 393.7 221 93.2
Thhalv10014652m.g Eutrema salsugineum HOM05D001880 ORTHO05D005098 1.3e-107 393.3 221 93.2
THA.LOC104815053 Tarenaya hassleriana HOM05D001880 ORTHO05D005098 2.3e-101 372.5 221 86.4
DCAR_004495 Daucus carota HOM05D001880 ORTHO05D005098 7.4e-100 367.5 221 84.6
Lj1g0025868 Lotus japonicus HOM05D001880 ORTHO05D005098 1.3e-99 366.7 224 83.5
Potri.006G241900 Populus trichocarpa HOM05D001880 ORTHO05D005098 2.8e-99 365.5 221 85.5
Cc08_g09010 Coffea canephora HOM05D001880 ORTHO05D005098 3.7e-99 365.2 221 85.1
vmacro07643 Vaccinium macrocarpon HOM05D001880 ORTHO05D005098 4.8e-99 364.8 221 84.2
THA.LOC104799203 Tarenaya hassleriana HOM05D001880 ORTHO05D005098 8.1e-99 364.0 221 84.6
CANSAT25G1770 Cannabis sativa HOM05D001880 ORTHO05D005098 1.4e-98 363.2 221 84.2
Hma1.2p1_0140F.1_g063500 Hydrangea macrophylla HOM05D001880 ORTHO05D005098 1.8e-98 362.8 221 85.1
ClCG11G014050 Citrullus lanatus HOM05D001880 ORTHO05D005098 3.1e-98 362.1 221 83.3
CAN.G21.29 Capsicum annuum HOM05D001880 ORTHO05D005098 5.3e-98 361.3 221 83.3
arahy.Tifrunner.gnm1.ann1.I4CW6I Arachis hypogaea HOM05D001880 ORTHO05D005098 6.9e-98 360.9 221 82.8
BolC2t06461H Brassica oleracea HOM05D001880 ORTHO05D005098 6.9e-98 360.9 223 87.4
Nitab4.5_0007240g0010 Nicotiana tabacum HOM05D001880 ORTHO05D005098 6.9e-98 360.9 221 83.7
arahy.Tifrunner.gnm1.ann1.0TS4QU Arachis hypogaea HOM05D001880 ORTHO05D005098 1.2e-97 360.1 221 82.8
Phvul.009G106500 Phaseolus vulgaris HOM05D001880 ORTHO05D005098 1.5e-97 359.8 221 82.8
Potri.018G037800 Populus trichocarpa HOM05D001880 ORTHO05D005098 1.5e-97 359.8 221 83.3
MELO3C003579.2 Cucumis melo HOM05D001880 ORTHO05D005098 2.0e-97 359.4 221 82.8
Migut.A00247 Erythranthe guttata HOM05D001880 ORTHO05D005098 2.0e-97 359.4 221 83.3
Gohir.D08G272200 Gossypium hirsutum HOM05D001880 ORTHO05D005098 2.0e-97 359.4 221 82.8
Gorai.004G290600 Gossypium raimondii HOM05D001880 ORTHO05D005098 2.0e-97 359.4 221 82.8
PGSC0003DMG400010834 Solanum tuberosum HOM05D001880 ORTHO05D005098 2.0e-97 359.4 221 82.8
Nn3g18068 Nelumbo nucifera HOM05D001880 ORTHO05D005098 2.6e-97 359.0 221 83.7
VMungo1309G0461 Vigna mungo HOM05D001880 ORTHO05D005098 2.6e-97 359.0 220 83.2
Ciclev10009455m.g Citrus clementina HOM05D001880 ORTHO05D005098 3.4e-97 358.6 221 83.3
Nitab4.5_0000052g0180 Nicotiana tabacum HOM05D001880 ORTHO05D005098 3.4e-97 358.6 219 83.6
CsaV3_3G047450 Cucumis sativus L. HOM05D001880 ORTHO05D005098 4.5e-97 358.2 221 82.8
Solyc08g068300.3 Solanum lycopersicum HOM05D001880 ORTHO05D005098 4.5e-97 358.2 221 82.8
Sopen08g022150 Solanum pennellii HOM05D001880 ORTHO05D005098 4.5e-97 358.2 221 82.8
Peaxi162Scf00523g00111 Petunia axillaris HOM05D001880 ORTHO05D005098 7.6e-97 357.5 221 82.8
Manes.16G065900 Manihot esculenta HOM05D001880 ORTHO05D005098 1.0e-96 357.1 221 81.9
Glyma.04G080400 Glycine max HOM05D001880 ORTHO05D005098 1.3e-96 356.7 221 82.4
PSO210G1422 Papaver somniferum HOM05D001880 ORTHO05D005098 1.3e-96 356.7 221 82.8
MSTRG.25891 Avicennia marina HOM05D001880 ORTHO05D005098 1.7e-96 356.3 221 82.8
Duzib150G0439 Durio zibethinus HOM05D001880 ORTHO05D005098 1.7e-96 356.3 221 81.9
Glyma.06G082100 Glycine max HOM05D001880 ORTHO05D005098 1.7e-96 356.3 221 82.4
Sed0004320 Sechium edule HOM05D001880 ORTHO05D005098 1.7e-96 356.3 221 81.4
Cpa.g.sc78.78 Carica papaya HOM05D001880 ORTHO05D005098 2.2e-96 355.9 221 81.9
Lalb_Chr08g0243251 Lupinus albus HOM05D001880 ORTHO05D005098 2.2e-96 355.9 221 81.9
Sed0015028 Sechium edule HOM05D001880 ORTHO05D005098 2.2e-96 355.9 221 81.4
Thecc.09G040200 Theobroma cacao HOM05D001880 ORTHO05D005098 2.2e-96 355.9 221 82.4
CSS0008123 Camellia sinensis var. sinensis HOM05D001880 ORTHO05D005098 2.9e-96 355.5 221 82.8
CSS0050171 Camellia sinensis var. sinensis HOM05D001880 ORTHO05D005098 2.9e-96 355.5 221 82.8
PSO210G6462 Papaver somniferum HOM05D001880 ORTHO05D005098 2.9e-96 355.5 221 82.4
Atru.chr7.2156 Acer truncatum HOM05D001880 ORTHO05D005098 3.8e-96 355.1 221 81.9
Hma1.2p1_0422F.1_g150140 Hydrangea macrophylla HOM05D001880 ORTHO05D005098 3.8e-96 355.1 221 82.4
Gohir.A08G250700 Gossypium hirsutum HOM05D001880 ORTHO05D005098 4.9e-96 354.8 221 81.9
DCAR_000746 Daucus carota HOM05D001880 ORTHO05D005098 6.5e-96 354.4 221 82.4
ATR0315G044 Amborella trichopoda HOM05D001880 ORTHO05D005098 1.1e-95 353.6 221 82.8
Gohir.D05G049500 Gossypium hirsutum HOM05D001880 ORTHO05D005098 1.4e-95 353.2 221 81.9
HanXRQChr07g0188141 Helianthus annuus HOM05D001880 ORTHO05D005098 1.4e-95 353.2 221 81.9
CiPaw.08G023800 Carya illinoinensis HOM05D001880 ORTHO05D005098 1.9e-95 352.8 221 81.4
Duzib187G1109 Durio zibethinus HOM05D001880 ORTHO05D005098 2.5e-95 352.4 221 81.4
Eucgr.C01583 Eucalyptus grandis HOM05D001880 ORTHO05D005098 2.5e-95 352.4 221 81.4
TWI63G1366 Tripterygium wilfordii HOM05D001880 ORTHO05D005098 2.5e-95 352.4 221 82.8
Aqoxy7G01618 Aquilegia oxysepala HOM05D001880 ORTHO05D005098 3.2e-95 352.1 221 81.9
MD08G1117900 Malus domestica HOM05D001880 ORTHO05D005098 3.2e-95 352.1 221 81.9
unitig_748.g7799 Utricularia gibba HOM05D001880 ORTHO05D005098 3.2e-95 352.1 221 81.4
Lalb_Chr11g0064351 Lupinus albus HOM05D001880 ORTHO05D005098 4.2e-95 351.7 221 81.0
Prupe.1G452200 Prunus persica HOM05D001880 ORTHO05D005098 4.2e-95 351.7 231 79.2
Gorai.009G050800 Gossypium raimondii HOM05D001880 ORTHO05D005098 7.1e-95 350.9 221 81.4
Psat0s4721g0040 Pisum sativum HOM05D001880 ORTHO05D005098 7.1e-95 350.9 221 80.5
TAR626G0694 Trochodendron aralioides HOM05D001880 ORTHO05D005098 9.3e-95 350.5 221 81.4
Gohir.A05G048200 Gossypium hirsutum HOM05D001880 ORTHO05D005098 1.2e-94 350.1 221 81.0
Aa31LG3G15700 Aethionema arabicum HOM05D001758 ORTHO05D005969 1.6e-94 349.7 221 85.1
MD15G1097400 Malus domestica HOM05D001880 ORTHO05D005098 1.6e-94 349.7 221 81.4
TWI32G1114 Tripterygium wilfordii HOM05D001880 ORTHO05D005098 1.6e-94 349.7 221 81.9
HPP92_023949 Vanilla planifolia HOM05D001880 ORTHO05D005098 2.1e-94 349.4 221 80.5
MSTRG.1651 Avicennia marina HOM05D001880 ORTHO05D005098 2.7e-94 349.0 221 81.0
Cfa013347 Carpinus fangiana HOM05D001880 ORTHO05D005098 3.5e-94 348.6 220 80.9
Manes.03G063100 Manihot esculenta HOM05D001880 ORTHO05D005098 3.5e-94 348.6 221 80.5
Medtr3g110022 Medicago truncatula HOM05D001880 ORTHO05D005098 3.5e-94 348.6 221 80.5
COL.COLO4_18693 Corchorus olitorius HOM05D001880 ORTHO05D005098 4.6e-94 348.2 221 80.5
CiPaw.07G206800 Carya illinoinensis HOM05D001880 ORTHO05D005098 1.0e-93 347.1 220 80.0
Gohir.A07G023800 Gossypium hirsutum HOM05D001880 ORTHO05D005098 1.3e-93 346.7 221 80.5
TAR383G0375 Trochodendron aralioides HOM05D001880 ORTHO05D005098 2.3e-93 345.9 221 80.5
Dinv14228 Davidia involucrata HOM05D001880 ORTHO05D005098 3.0e-93 345.5 221 81.0
Zm00001eb350500 Zea mays HOM05D001880 ORTHO05D005098 3.0e-93 345.5 221 79.2
Aqoxy7G03843 Aquilegia oxysepala HOM05D001880 ORTHO05D005098 3.9e-93 345.1 221 79.2
Gohir.D07G027400 Gossypium hirsutum HOM05D001880 ORTHO05D005098 3.9e-93 345.1 221 80.1
Nn2g11707 Nelumbo nucifera HOM05D001880 ORTHO05D005098 5.1e-93 344.7 221 80.5
SGA_v2.0_scaffold163G38091 Striga asiatica HOM05D001880 ORTHO05D005098 5.1e-93 344.7 226 79.2
Gorai.001G028600 Gossypium raimondii HOM05D001880 ORTHO05D005098 1.5e-92 343.2 220 79.5
PGR044G1166 Punica granatum HOM05D001880 ORTHO05D005098 1.9e-92 342.8 221 79.6
TPR.G1376 Trifolium pratense HOM05D001880 ORTHO05D005098 1.3e-91 340.1 221 79.6
Lalb_Chr23g0269461 Lupinus albus HOM05D001880 ORTHO05D005098 2.1e-91 339.3 221 77.8
CDE05G1188 Ceratophyllum demersum HOM05D001880 ORTHO05D005098 2.8e-91 339.0 221 78.7
SalBow8G4639 Salvia bowleyana HOM05D001880 ORTHO05D005098 3.4e-89 332.0 222 77.5
SMO134G0016 Selaginella moellendorffii HOM05D001880 ORTHO05D005098 4.5e-89 331.6 221 74.7
Mapoly0042s0036 Marchantia polymorpha HOM05D001880 ORTHO05D005098 8.4e-88 327.4 221 76.0
GSVIVG01035667001 Vitis vinifera HOM05D001880 ORTHO05D005098 4.2e-87 325.1 204 83.3
SalBow4G0117 Salvia bowleyana HOM05D001880 ORTHO05D005098 7.2e-87 324.3 221 77.4
Rhsim03G0046500 Rhododendron simsii HOM05D001880 ORTHO05D005098 1.2e-86 323.6 221 77.8
Hund19544 Selenicereus undatus HOM05D001880 ORTHO05D005098 1.8e-85 319.7 226 73.9
CBR_g39177 Chara braunii HOM05D001880 ORTHO05D005098 8.7e-85 317.4 221 74.7
Pp3c9_4250 Physcomitrium patens HOM05D001880 ORTHO05D005098 1.5e-84 316.6 221 72.9
Lj8C597T7 Lonicera japonica HOM05D001880 ORTHO05D005098 2.5e-84 315.8 221 75.6
CBR_g40963 Chara braunii HOM05D001880 ORTHO05D005098 4.3e-84 315.1 221 74.7
FvH4_2g36060 Fragaria vesca HOM05D001880 ORTHO05D005098 5.7e-84 314.7 221 74.2
RcHm_v2.0_Chr6g0305791 Rosa chinensis HOM05D001880 ORTHO05D005098 5.7e-84 314.7 221 74.2
Pp3c9_9290 Physcomitrium patens HOM05D001880 ORTHO05D005098 8.2e-83 310.8 221 71.9
Oeu014654.1 Olea europaea HOM05D001880 ORTHO05D005098 4.1e-82 308.5 221 73.8
SGA_v2.0_scaffold169G38642 Striga asiatica HOM05D001880 ORTHO05D005098 9.0e-82 307.4 221 73.3
Os01g0750500 Oryza sativa ssp. japonica HOM05D001880 ORTHO05D005098 1.2e-81 307.0 221 70.1
ECA246G2183 Erigeron canadensis HOM05D001880 ORTHO05D004730 9.4e-79 297.4 219 69.9
Dinv30256 Davidia involucrata HOM05D001880 ORTHO05D005098 2.1e-78 296.2 167 87.4
Lsat_1_v5_gn_5_34021 Lactuca sativa HOM05D001880 ORTHO05D005098 2.1e-78 296.2 220 71.4
QL12p026578 Quercus lobata HOM05D001880 ORTHO05D005098 4.6e-78 295.0 167 86.2
Ca_15617_v3 Cicer arietinum L. HOM05D001880 ORTHO05D005098 8.8e-77 290.8 169 85.2
AUR62009327 Chenopodium quinoa HOM05D001880 ORTHO05D005098 1.5e-76 290.0 221 70.6
Sc09g0009110 Simmondsia chinensis HOM05D001880 ORTHO05D005098 3.1e-74 282.3 282 57.8
EL10Ac2g04067 Beta vulgaris HOM05D001880 ORTHO05D005098 3.4e-73 278.9 221 67.9
FAN27G1491 Fragaria x ananassa HOM05D001880 ORTHO05D005098 2.9e-72 275.8 221 67.9
FAN15G2674 Fragaria x ananassa HOM05D001880 ORTHO05D005098 1.1e-71 273.9 221 67.4
PSO832G1756 Papaver somniferum HOM05D001880 ORTHO05D005098 4.2e-71 271.9 222 65.8
Oeu016233.2 Olea europaea HOM05D001880 ORTHO05D005098 2.1e-70 269.6 221 65.6
Gorai.011G152300 Gossypium raimondii HOM05D001880 ORTHO05D005098 4.7e-70 268.5 221 65.2
Zm00001eb153360 Zea mays HOM05D001880 ORTHO05D005098 4.7e-70 268.5 222 65.8
AUR62023014 Chenopodium quinoa HOM05D000682 ORTHO05D000510 2.0e-68 263.1 208 70.2
AagrBONN_evm.TU.Sc2ySwM_228.2603 Anthoceros agrestis HOM05D001880 ORTHO05D005098 5.7e-68 261.5 145 82.8
Lj8C602T7 Lonicera japonica HOM05D001880 ORTHO05D005098 8.2e-67 257.7 221 64.7
Ah.10g035220 Amaranthus hybridus HOM05D001880 ORTHO05D005098 4.5e-65 251.9 221 63.8
Sabra18G0038400 Salix brachista HOM05D001880 ORTHO05D005098 5.0e-64 248.4 167 76.0
Haze_21860 Corylus avellana HOM05D001880 ORTHO05D005098 3.2e-63 245.7 357 44.3
Rhsim03G0044500 Rhododendron simsii HOM05D001880 ORTHO05D005098 2.1e-62 243.0 183 74.3
MCO11G833 Micromonas commoda HOM05D001880 ORTHO05D005098 9.7e-60 234.2 222 59.0
PRCOL_00004463 Prasinoderma coloniale HOM05D001880 ORTHO05D005098 2.9e-56 222.6 238 54.2
Cc00_g02820 Coffea canephora HOM05D001880 ORTHO05D005098 1.6e-49 200.3 108 85.2
Cc03_g15000 Coffea canephora HOM05D001880 ORTHO05D005098 1.6e-49 200.3 108 85.2
Cre06.g275300 Chlamydomonas reinhardtii HOM05D001880 ORTHO05D005098 1.4e-45 187.2 146 63.0
HPP92_023928 Vanilla planifolia HOM05D001880 ORTHO05D005098 8.8e-45 184.5 140 70.7
CSS0023199 Camellia sinensis var. sinensis HOM05D001880 ORTHO05D005098 2.6e-44 183.0 277 45.8
MBI04_g19163_MAGBIO Magnolia biondii HOM05D001880 ORTHO05D005098 2.6e-44 183.0 141 73.8
Cfa026630 Carpinus fangiana HOM05D004477 ORTHO05D005615 3.4e-44 182.6 215 49.3
Pp3c9_8200 Physcomitrium patens HOM05D001880 ORTHO05D005098 6.1e-38 161.8 106 74.5
Lj7A706G42 Lonicera japonica HOM05D001880 ORTHO05D001339 8.0e-38 161.4 117 66.7
HPP92_023929 Vanilla planifolia HOM05D001880 ORTHO05D005098 9.8e-36 154.5 84 82.1
Sabra06G0189300 Salix brachista HOM05D001880 ORTHO05D005098 2.2e-35 153.3 81 86.4
Lj7A706T45 Lonicera japonica HOM05D001880 ORTHO05D005098 2.9e-35 152.9 119 72.3
Os05g0221400 Oryza sativa ssp. japonica HOM05D001880 ORTHO05D005098 1.8e-34 150.2 81 86.4
Zm00001eb036010 Zea mays HOM05D001880 ORTHO05D005098 9.8e-28 127.9 106 70.8
Zm00001eb052320 Zea mays HOM05D001880 ORTHO05D005098 9.8e-28 127.9 106 70.8
Zm00001eb071380 Zea mays HOM05D001880 ORTHO05D005098 9.8e-28 127.9 106 70.8
Zm00001eb291550 Zea mays HOM05D001880 ORTHO05D005098 9.8e-28 127.9 106 70.8
Zm00001eb391830 Zea mays HOM05D001880 ORTHO05D005098 9.8e-28 127.9 106 70.8
Cc00_g34580 Coffea canephora HOM05D001880 ORTHO05D005098 1.7e-27 127.1 71 77.5
Gorai.011G178000 Gossypium raimondii HOM05D001880 ORTHO05D005098 1.1e-15 87.8 71 71.8
CSS0036439 Camellia sinensis var. sinensis HOM05D001880 ORTHO05D005098 1.6e-14 84.0 69 68.1
Gorai.012G085200 Gossypium raimondii HOM05D001880 ORTHO05D005098 4.7e-14 82.4 69 68.1
Gorai.011G118500 Gossypium raimondii HOM05D001880 ORTHO05D013650 3.2e-10 69.7 39 74.4
Gorai.002G175500 Gossypium raimondii HOM05D001035 ORTHO05D013650 1.2e-09 67.8 39 71.8
SalBow5G0200 Salvia bowleyana HOM05D001880 ORTHO05D355852 3.5e-09 66.2 48 64.6
SalBow8G1849 Salvia bowleyana HOM05D001880 ORTHO05D363534 3.5e-09 66.2 48 64.6
SalBow8G2043 Salvia bowleyana HOM05D001880 ORTHO05D356500 3.5e-09 66.2 48 64.6
SalBow6G5594 Salvia bowleyana HOM05D001880 ORTHO05D357349 1.3e-08 64.3 48 62.5


User provided reference genes

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