Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung01927 Brassica carinata HOM05D004036 ORTHO05D004576 8.7e-82 307.0 162 100.0
BcaC03g13367 Brassica carinata HOM05D004036 ORTHO05D004576 6.4e-69 264.2 150 90.7
A02p01010 Brassica napus HOM05D004036 ORTHO05D004576 5.7e-57 224.6 163 76.1
BraA02t05082Z Brassica rapa HOM05D004036 ORTHO05D004576 5.7e-57 224.6 163 76.1
C02p05040 Brassica napus HOM05D004036 ORTHO05D004576 6.5e-53 211.1 150 75.3
C09p65420 Brassica napus HOM05D004036 ORTHO05D004576 6.5e-53 211.1 171 71.9
BolC9t59367H Brassica oleracea HOM05D004036 ORTHO05D004576 6.5e-53 211.1 171 71.9
BcaC04g19226 Brassica carinata HOM05D004036 ORTHO05D004576 8.4e-53 210.7 171 71.9
A10p26310 Brassica napus HOM05D004036 ORTHO05D004576 3.0e-50 202.2 172 72.1
Sp6g32160 Schrenkiella parvula HOM05D004036 ORTHO05D004576 3.3e-49 198.7 171 70.8
BcaB01g06306 Brassica carinata HOM05D004036 ORTHO05D004576 4.3e-49 198.4 171 70.2
A03p05000 Brassica napus HOM05D004036 ORTHO05D004576 2.5e-44 182.6 172 66.9
BcaB08g37059 Brassica carinata HOM05D004036 ORTHO05D004576 4.2e-44 181.8 173 67.1
BraA10t44688Z Brassica rapa HOM05D004036 ORTHO05D004576 2.1e-43 179.5 175 66.3
AL6G22100 Arabidopsis lyrata HOM05D004036 ORTHO05D004576 2.7e-43 179.1 175 64.6
AT5G11440 Arabidopsis thaliana HOM05D004036 ORTHO05D004576 4.6e-43 178.3 165 66.7
C03p05740 Brassica napus HOM05D004036 ORTHO05D004576 1.4e-42 176.8 172 66.9
BcaB01g05484 Brassica carinata HOM05D004036 ORTHO05D004576 1.5e-41 173.3 172 65.7
BolC3t13087H Brassica oleracea HOM05D004036 ORTHO05D004576 2.5e-41 172.6 172 65.7
Carub.0006s0989 Capsella rubella HOM05D004036 ORTHO05D004576 7.4e-41 171.0 170 65.9
Thhalv10014836m.g Eutrema salsugineum HOM05D004036 ORTHO05D004576 1.3e-40 170.2 177 64.4
CARHR201790 Cardamine hirsuta HOM05D004036 ORTHO05D004576 9.1e-39 164.1 177 59.9
Aa31LG3G15750 Aethionema arabicum HOM05D004036 ORTHO05D004576 5.7e-33 144.8 180 55.0
BolC2t06459H Brassica oleracea HOM05D004036 ORTHO05D004576 4.1e-31 138.7 88 81.8
Thhalv10004997m.g Eutrema salsugineum HOM05D004036 ORTHO05D004576 4.1e-31 138.7 168 54.2
Sp2g22000 Schrenkiella parvula HOM05D004036 ORTHO05D004576 7.0e-31 137.9 167 51.5
A06p36250 Brassica napus HOM05D004036 ORTHO05D004576 8.5e-29 131.0 169 52.7
BraA06t26547Z Brassica rapa HOM05D004036 ORTHO05D004576 8.5e-29 131.0 169 52.7
C07p42280 Brassica napus HOM05D004036 ORTHO05D004576 1.1e-28 130.6 171 52.0
BolC7t44757H Brassica oleracea HOM05D004036 ORTHO05D004576 1.1e-28 130.6 171 52.0
AL6G37340 Arabidopsis lyrata HOM05D004036 ORTHO05D004576 4.0e-26 122.1 185 48.6
CARHR187840 Cardamine hirsuta HOM05D004036 ORTHO05D004576 5.2e-26 121.7 153 52.9
BolC2t12008H Brassica oleracea HOM05D004036 ORTHO05D004576 1.3e-24 117.1 172 48.8
Carub.0006s2340 Capsella rubella HOM05D004036 ORTHO05D004576 1.3e-24 117.1 189 47.1
THA.LOC104799217 Tarenaya hassleriana HOM05D004036 ORTHO05D004576 1.7e-24 116.7 169 45.0
Aa31LG11G4630 Aethionema arabicum HOM05D004036 ORTHO05D004576 6.3e-24 114.8 175 45.7
C02p59450 Brassica napus HOM05D004036 ORTHO05D004576 1.4e-23 113.6 161 50.9
BcaNung07259 Brassica carinata HOM05D000175 ORTHO05D000481 5.9e-22 108.2 152 50.0
A02p39670 Brassica napus HOM05D004036 ORTHO05D004576 1.7e-21 106.7 161 48.4
BraA02t08932Z Brassica rapa HOM05D004036 ORTHO05D004576 1.7e-21 106.7 161 48.4
AT5G25540 Arabidopsis thaliana HOM05D004036 ORTHO05D004576 2.9e-21 105.9 180 46.1
BcaB07g29991 Brassica carinata HOM05D004036 ORTHO05D004576 3.2e-20 102.4 164 48.2
BcaB04g19786 Brassica carinata HOM05D004036 ORTHO05D004576 7.2e-20 101.3 146 47.9
Sabra18G0035300 Salix brachista HOM05D004036 ORTHO05D004576 6.1e-19 98.2 192 34.9
TWI63G0992 Tripterygium wilfordii HOM05D004036 ORTHO05D004576 6.1e-19 98.2 180 38.3
Potri.006G246600 Populus trichocarpa HOM05D004036 ORTHO05D004576 8.0e-19 97.8 198 36.9
THA.LOC104815044 Tarenaya hassleriana HOM05D004036 ORTHO05D004576 8.0e-19 97.8 182 40.1
FAN20G2367 Fragaria x ananassa HOM05D004036 ORTHO05D004576 1.0e-18 97.4 174 37.4
Duzib150G0431 Durio zibethinus HOM05D004036 ORTHO05D004576 2.3e-18 96.3 197 35.5
C01p19860 Brassica napus HOM05D004036 ORTHO05D004576 5.2e-18 95.1 111 52.3
BolC1t01914H Brassica oleracea HOM05D004036 ORTHO05D004576 5.2e-18 95.1 111 52.3
FvH4_2g30160 Fragaria vesca HOM05D004036 ORTHO05D004576 5.2e-18 95.1 194 36.6
FAN24G0425 Fragaria x ananassa HOM05D004036 ORTHO05D004576 5.2e-18 95.1 194 36.6
Manes.16G068200 Manihot esculenta HOM05D004036 ORTHO05D004576 5.2e-18 95.1 185 36.2
QL12p031289 Quercus lobata HOM05D004036 ORTHO05D004576 5.2e-18 95.1 184 35.9
FAN27G0504 Fragaria x ananassa HOM05D004036 ORTHO05D004576 6.8e-18 94.7 191 37.2
COL.COLO4_24066 Corchorus olitorius HOM05D004036 ORTHO05D004576 1.2e-17 94.0 198 34.8
FAN15G1681 Fragaria x ananassa HOM05D004036 ORTHO05D004576 1.2e-17 94.0 194 36.6
Gohir.D06G047900 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.5e-17 93.6 158 39.9
RcHm_v2.0_Chr6g0312751 Rosa chinensis HOM05D004036 ORTHO05D004576 1.5e-17 93.6 190 36.3
Atru.chr7.2325 Acer truncatum HOM05D004036 ORTHO05D004576 2.0e-17 93.2 187 38.0
BcaC09g50856 Brassica carinata HOM05D004036 ORTHO05D004576 2.0e-17 93.2 111 53.2
Prupe.1G466700 Prunus persica HOM05D004036 ORTHO05D004576 2.6e-17 92.8 190 34.7
Thecc.09G144100 Theobroma cacao HOM05D004036 ORTHO05D004576 4.4e-17 92.0 190 35.8
TWI34G1922 Tripterygium wilfordii HOM05D004036 ORTHO05D004576 4.4e-17 92.0 174 35.6
CiPaw.08G015700 Carya illinoinensis HOM05D004036 ORTHO05D004576 5.7e-17 91.7 199 37.2
Manes.03G064800 Manihot esculenta HOM05D004036 ORTHO05D004576 7.5e-17 91.3 200 34.5
BolC7t40715H Brassica oleracea HOM05D004036 ORTHO05D004576 1.3e-16 90.5 112 50.9
C07p03200 Brassica napus HOM05D004036 ORTHO05D004576 1.7e-16 90.1 113 50.4
Gohir.A06G047900 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.7e-16 90.1 190 34.7
Ciclev10009480m.g Citrus clementina HOM05D004036 ORTHO05D004576 2.2e-16 89.7 194 34.5
Oeu045176.1 Olea europaea HOM05D004036 ORTHO05D004576 2.2e-16 89.7 195 37.9
arahy.Tifrunner.gnm1.ann1.7NC9IZ Arachis hypogaea HOM05D004036 ORTHO05D004576 2.8e-16 89.4 172 38.4
Gohir.D01G158400 Gossypium hirsutum HOM05D004036 ORTHO05D004576 2.8e-16 89.4 172 38.4
Hma1.2p1_0003F.1_g003650 Hydrangea macrophylla HOM05D004036 ORTHO05D004576 2.8e-16 89.4 177 35.6
Gohir.D05G011350 Gossypium hirsutum HOM05D004036 ORTHO05D004576 3.7e-16 89.0 160 37.5
arahy.Tifrunner.gnm1.ann1.AAJ54F Arachis hypogaea HOM05D004036 ORTHO05D004576 6.3e-16 88.2 172 38.4
TAR624G0048 Trochodendron aralioides HOM05D004036 ORTHO05D004576 6.3e-16 88.2 200 31.0
Phvul.001G055700 Phaseolus vulgaris HOM05D004036 ORTHO05D004576 8.3e-16 87.8 187 36.4
Duzib187G1985 Durio zibethinus HOM05D004036 ORTHO05D004576 1.4e-15 87.0 105 46.7
Lsat_1_v5_gn_3_108141 Lactuca sativa HOM05D004036 ORTHO05D004576 1.4e-15 87.0 153 35.9
CANSAT56G2568 Cannabis sativa HOM05D004036 ORTHO05D004576 1.8e-15 86.7 163 36.8
VMungo0647G1622 Vigna mungo HOM05D004036 ORTHO05D004576 1.8e-15 86.7 187 35.8
Cfa013210 Carpinus fangiana HOM05D004036 ORTHO05D004576 2.4e-15 86.3 189 35.4
Gohir.A05G010600 Gossypium hirsutum HOM05D004036 ORTHO05D004576 2.4e-15 86.3 187 38.0
Dinv35883 Davidia involucrata HOM05D004036 ORTHO05D004576 3.1e-15 85.9 148 39.2
Gorai.009G011700 Gossypium raimondii HOM05D004036 ORTHO05D004576 3.1e-15 85.9 187 37.4
Gohir.D12G195700 Gossypium hirsutum HOM05D004036 ORTHO05D004576 4.1e-15 85.5 188 37.8
Gohir.A12G241700 Gossypium hirsutum HOM05D004036 ORTHO05D004576 5.4e-15 85.1 188 37.8
Gohir.D09G022200 Gossypium hirsutum HOM05D004036 ORTHO05D004576 7.0e-15 84.7 188 36.7
Gorai.008G052900 Gossypium raimondii HOM05D004036 ORTHO05D004576 7.0e-15 84.7 181 35.4
Gohir.D09G023175 Gossypium hirsutum HOM05D004036 ORTHO05D004576 9.1e-15 84.3 188 37.2
Gorai.004G151900 Gossypium raimondii HOM05D004036 ORTHO05D004576 9.1e-15 84.3 188 36.7
C09p06800 Brassica napus HOM05D004036 ORTHO05D004576 1.6e-14 83.6 131 45.8
BolC9t53601H Brassica oleracea HOM05D004036 ORTHO05D004576 1.6e-14 83.6 131 45.8
Gohir.A12G126300 Gossypium hirsutum HOM05D004036 ORTHO05D004576 2.0e-14 83.2 188 36.7
Gohir.A11G185400 Gossypium hirsutum HOM05D004036 ORTHO05D004576 3.5e-14 82.4 188 36.7
MSTRG.1647 Avicennia marina HOM05D004036 ORTHO05D004576 5.9e-14 81.6 169 35.5
Gohir.D05G335100 Gossypium hirsutum HOM05D004036 ORTHO05D004576 7.7e-14 81.3 188 36.7
Aqoxy7G01846 Aquilegia oxysepala HOM05D004036 ORTHO05D004576 1.3e-13 80.5 144 36.1
Cpa.g.sc91.6 Carica papaya HOM05D004036 ORTHO05D004576 1.3e-13 80.5 95 47.4
Hma1.2p1_0175F.1_g077210 Hydrangea macrophylla HOM05D004036 ORTHO05D004576 1.7e-13 80.1 170 34.1
Nitab4.5_0006579g0060 Nicotiana tabacum HOM05D004036 ORTHO05D004576 2.2e-13 79.7 179 31.8
Eucgr.C01818 Eucalyptus grandis HOM05D004036 ORTHO05D004576 2.9e-13 79.3 190 33.7
Nitab4.5_0000125g0270 Nicotiana tabacum HOM05D004036 ORTHO05D004576 2.9e-13 79.3 179 31.8
DCAR_003061 Daucus carota HOM05D004036 ORTHO05D004576 6.5e-13 78.2 186 34.4
SalBow8G4507 Salvia bowleyana HOM05D004036 ORTHO05D004576 6.5e-13 78.2 193 35.2
SalBow8G4816 Salvia bowleyana HOM05D004036 ORTHO05D004576 6.5e-13 78.2 193 35.2
Peaxi162Scf00105g01426 Petunia axillaris HOM05D004036 ORTHO05D004576 8.5e-13 77.8 185 31.9
Sabra06G0192900 Salix brachista HOM05D004036 ORTHO05D004576 8.5e-13 77.8 203 31.0
Lj5g0012132 Lotus japonicus HOM05D004036 ORTHO05D004576 1.1e-12 77.4 182 31.9
Medtr1g011280 Medicago truncatula HOM05D004036 ORTHO05D004576 1.5e-12 77.0 181 32.6
ClCG05G017210 Citrullus lanatus HOM05D004036 ORTHO05D004576 1.9e-12 76.6 172 34.3
TAR626G0352 Trochodendron aralioides HOM05D004036 ORTHO05D004576 1.9e-12 76.6 132 34.1
SGA_v2.0_scaffold163G38098 Striga asiatica HOM05D004036 ORTHO05D004576 2.5e-12 76.3 192 34.4
Glyma.14G129200 Glycine max HOM05D004036 ORTHO05D004576 3.2e-12 75.9 103 43.7
Gorai.010G053700 Gossypium raimondii HOM05D004036 ORTHO05D004576 3.2e-12 75.9 146 35.6
Psat6g031000 Pisum sativum HOM05D004036 ORTHO05D004576 3.2e-12 75.9 178 33.7
PGR031G0366 Punica granatum HOM05D004036 ORTHO05D004576 3.2e-12 75.9 186 32.8
Glyma.06G073400 Glycine max HOM05D004036 ORTHO05D004576 4.2e-12 75.5 129 38.0
Lalb_Chr23g0269031 Lupinus albus HOM05D004036 ORTHO05D004576 4.2e-12 75.5 174 36.2
TPR.G20095 Trifolium pratense HOM05D004036 ORTHO05D004576 7.2e-12 74.7 175 32.0
Lalb_Chr08g0243781 Lupinus albus HOM05D004036 ORTHO05D004576 9.5e-12 74.3 168 35.1
CAN.G21.9 Capsicum annuum HOM05D004036 ORTHO05D004576 1.2e-11 73.9 178 32.6
MELO3C003669.2 Cucumis melo HOM05D004036 ORTHO05D004576 1.2e-11 73.9 149 36.9
ECA240G1837 Erigeron canadensis HOM05D004036 ORTHO05D004576 1.2e-11 73.9 96 44.8
PGSC0003DMG400033628 Solanum tuberosum HOM05D004036 ORTHO05D004576 1.6e-11 73.6 180 33.3
Glyma.17G203900 Glycine max HOM05D004036 ORTHO05D004576 2.7e-11 72.8 102 41.2
HanXRQChr13g0409481 Helianthus annuus HOM05D004036 ORTHO05D004576 3.6e-11 72.4 174 31.6
CiPaw.03G235800 Carya illinoinensis HOM05D004036 ORTHO05D004576 6.1e-11 71.6 194 28.9
Sopen08g021750 Solanum pennellii HOM05D004036 ORTHO05D004576 8.0e-11 71.2 89 44.9
MSTRG.14001 Avicennia marina HOM05D004036 ORTHO05D004576 1.0e-10 70.9 193 30.6
Haze_21623 Corylus avellana HOM05D004036 ORTHO05D004576 1.0e-10 70.9 229 30.6
CsaV3_3G046690 Cucumis sativus L. HOM05D004036 ORTHO05D004576 2.3e-10 69.7 83 49.4
Gohir.A07G032200 Gossypium hirsutum HOM05D004036 ORTHO05D004576 4.0e-10 68.9 133 40.6
Gohir.A08G237500 Gossypium hirsutum HOM05D004036 ORTHO05D004576 4.0e-10 68.9 133 40.6
MD08G1136600 Malus domestica HOM05D004036 ORTHO05D004576 5.2e-10 68.6 85 49.4
Solyc08g067810.3 Solanum lycopersicum HOM05D004036 ORTHO05D004576 5.2e-10 68.6 89 43.8
DCAR_007682 Daucus carota HOM05D004036 ORTHO05D004576 8.8e-10 67.8 102 40.2
Sc23g0007020 Simmondsia chinensis HOM05D004036 ORTHO05D004576 8.8e-10 67.8 128 32.8
GSVIVG01015440001 Vitis vinifera HOM05D004036 ORTHO05D004576 1.2e-09 67.4 87 47.1
HanXRQChr03g0077811 Helianthus annuus HOM05D004036 ORTHO05D004576 1.5e-09 67.0 72 47.2
BraA03t09836Z Brassica rapa HOM05D002580 ORTHO05D002811 4.4e-09 65.5 57 68.4
Migut.E01501 Erythranthe guttata HOM05D004036 ORTHO05D004576 4.4e-09 65.5 65 49.2
Gohir.D04G088301 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.7e-08 63.5 46 63.0
Gohir.D12G143101 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.7e-08 63.5 46 63.0
EL10Ac2g02537 Beta vulgaris HOM05D004036 ORTHO05D004576 2.2e-08 63.2 165 32.1
CSS0014753 Camellia sinensis var. sinensis HOM05D004036 ORTHO05D004576 2.2e-08 63.2 47 59.6
Cc08_g08300 Coffea canephora HOM05D004036 ORTHO05D004576 3.7e-08 62.4 104 39.4
MBI01_g10034_MAGBIO Magnolia biondii HOM05D004036 ORTHO05D004576 3.7e-08 62.4 181 31.5
BraA08t33004Z Brassica rapa HOM05D004036 ORTHO05D004576 4.9e-08 62.0 44 68.2
Nn8g39276 Nelumbo nucifera HOM05D004036 ORTHO05D004576 6.3e-08 61.6 147 30.6
Ah.12g063370 Amaranthus hybridus HOM05D004036 ORTHO05D004576 1.1e-07 60.8 113 35.4
AUR62032381 Chenopodium quinoa HOM05D004036 ORTHO05D004576 3.1e-07 59.3 154 28.6
Actinidia14638 Actinidia chinensis HOM05D004036 ORTHO05D004576 4.1e-07 58.9 99 40.4
QL02p086217 Quercus lobata HOM05D004036 ORTHO05D004576 4.1e-07 58.9 112 38.4
MBI04_g26645_MAGBIO Magnolia biondii HOM05D004036 ORTHO05D004576 5.4e-07 58.5 62 48.4
Phvul.009G097900 Phaseolus vulgaris HOM05D004036 ORTHO05D050263 9.2e-07 57.8 73 43.8
Oeu031563.3 Olea europaea HOM05D004036 ORTHO05D004576 1.6e-06 57.0 157 27.4
Sed0025074 Sechium edule HOM05D004036 ORTHO05D004576 2.7e-06 56.2 142 36.6
Nn2g11835 Nelumbo nucifera HOM05D004036 ORTHO05D004576 3.5e-06 55.8 153 30.7
Sed0023915 Sechium edule HOM05D004036 ORTHO05D004576 4.5e-06 55.5 95 41.1
AUR62024838 Chenopodium quinoa HOM05D004036 ORTHO05D004576 5.9e-06 55.1 157 26.8


User provided reference genes

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