Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung01880 Brassica carinata HOM05D005483 ORTHO05D006924 0.0e+00 2072.7 1114 100.0
BolC2t06551H Brassica oleracea HOM05D005483 ORTHO05D006924 0.0e+00 2049.6 1114 96.9
C02p06100 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 2045.8 1114 98.6
BraA02t05161Z Brassica rapa HOM05D005483 ORTHO05D006924 0.0e+00 2036.5 1115 97.0
A02p01880 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 2035.0 1115 97.0
BcaNung01159 Brassica carinata HOM05D005483 ORTHO05D006924 0.0e+00 1984.1 1119 93.0
Sp6g30630 Schrenkiella parvula HOM05D005483 ORTHO05D006924 0.0e+00 1926.0 1124 89.1
Thhalv10012499m.g Eutrema salsugineum HOM05D005483 ORTHO05D006924 0.0e+00 1922.9 1124 89.0
AL6G24010 Arabidopsis lyrata HOM05D005483 ORTHO05D006924 0.0e+00 1914.0 1124 88.3
Carub.0006s1155 Capsella rubella HOM05D005483 ORTHO05D006924 0.0e+00 1905.2 1124 87.5
AT5G13390 Arabidopsis thaliana HOM05D005483 ORTHO05D006924 0.0e+00 1904.4 1124 87.9
A10p24830 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 1899.8 1128 88.3
BraA10t44547Z Brassica rapa HOM05D005483 ORTHO05D006924 0.0e+00 1898.6 1128 88.2
BolC9t59209H Brassica oleracea HOM05D005483 ORTHO05D006924 0.0e+00 1892.5 1128 88.1
C09p63680 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 1889.4 1128 87.9
CARHR200040 Cardamine hirsuta HOM05D005483 ORTHO05D006924 0.0e+00 1879.8 1124 88.3
Aa31LG3G14260 Aethionema arabicum HOM05D005483 ORTHO05D006924 0.0e+00 1849.3 1137 84.7
THA.LOC104825454 Tarenaya hassleriana HOM05D005483 ORTHO05D006924 0.0e+00 1764.6 1128 80.8
BcaC04g19119 Brassica carinata HOM05D005483 ORTHO05D006924 0.0e+00 1736.5 1141 81.8
Thecc.02G190700 Theobroma cacao HOM05D005483 ORTHO05D006924 0.0e+00 1615.5 1134 72.8
Duzib052G0599 Durio zibethinus HOM05D005483 ORTHO05D006924 0.0e+00 1602.4 1132 73.7
Gohir.A01G020200 Gossypium hirsutum HOM05D005483 ORTHO05D006924 0.0e+00 1596.3 1139 71.8
Gorai.002G021000 Gossypium raimondii HOM05D005483 ORTHO05D006924 0.0e+00 1596.3 1140 72.0
Gohir.D01G018800 Gossypium hirsutum HOM05D005483 ORTHO05D006924 0.0e+00 1593.2 1141 72.3
GSVIVG01001111001 Vitis vinifera HOM05D005483 ORTHO05D006924 0.0e+00 1592.4 1127 72.0
Manes.08G100200 Manihot esculenta HOM05D005483 ORTHO05D006924 0.0e+00 1588.2 1129 71.2
Cpa.g.sc38.68 Carica papaya HOM05D005483 ORTHO05D006924 0.0e+00 1585.9 1131 71.5
Duzib248G1306 Durio zibethinus HOM05D005483 ORTHO05D006924 0.0e+00 1584.7 1141 71.3
Ciclev10004203m.g Citrus clementina HOM05D005483 ORTHO05D006924 0.0e+00 1583.9 1131 70.9
TWI18G1022 Tripterygium wilfordii HOM05D005483 ORTHO05D006924 0.0e+00 1578.9 1133 70.6
PGR119G2201 Punica granatum HOM05D005483 ORTHO05D006924 0.0e+00 1578.5 1140 70.9
CANSAT01G1825 Cannabis sativa HOM05D005483 ORTHO05D006924 0.0e+00 1577.8 1129 70.3
RcHm_v2.0_Chr4g0428701 Rosa chinensis HOM05D005483 ORTHO05D006924 0.0e+00 1577.4 1130 70.5
Dinv17529 Davidia involucrata HOM05D005483 ORTHO05D006924 0.0e+00 1572.4 1134 70.5
FvH4_4g22440 Fragaria vesca HOM05D005483 ORTHO05D006924 0.0e+00 1567.0 1130 70.2
FAN07G1779 Fragaria x ananassa HOM05D005483 ORTHO05D006924 0.0e+00 1567.0 1130 70.0
Prupe.1G213300 Prunus persica HOM05D005483 ORTHO05D006924 0.0e+00 1562.0 1127 69.7
FAN17G2071 Fragaria x ananassa HOM05D005483 ORTHO05D006924 0.0e+00 1561.2 1130 69.6
FAN12G1583 Fragaria x ananassa HOM05D005483 ORTHO05D006924 0.0e+00 1560.4 1130 69.9
Potri.003G161400 Populus trichocarpa HOM05D005483 ORTHO05D006924 0.0e+00 1556.6 1129 71.7
MD16G1142500 Malus domestica HOM05D005483 ORTHO05D006924 0.0e+00 1555.4 1124 69.4
TWI36G1286 Tripterygium wilfordii HOM05D005483 ORTHO05D006924 0.0e+00 1542.7 1133 68.8
Hma1.2p1_1494F.1_g286890 Hydrangea macrophylla HOM05D005483 ORTHO05D006924 0.0e+00 1540.8 1127 68.6
QL03p048748 Quercus lobata HOM05D005483 ORTHO05D006924 0.0e+00 1539.6 1136 68.4
CSS0020507 Camellia sinensis var. sinensis HOM05D005483 ORTHO05D006924 0.0e+00 1537.3 1144 68.2
Sabra03G0117300 Salix brachista HOM05D005483 ORTHO05D006924 0.0e+00 1536.5 1181 67.3
Actinidia30577 Actinidia chinensis HOM05D005483 ORTHO05D006924 0.0e+00 1536.2 1129 68.9
Peaxi162Scf00842g00430 Petunia axillaris HOM05D005483 ORTHO05D006924 0.0e+00 1533.1 1124 68.6
Potri.001G068900 Populus trichocarpa HOM05D005483 ORTHO05D006924 0.0e+00 1532.7 1123 69.9
Haze_12514 Corylus avellana HOM05D005483 ORTHO05D006924 0.0e+00 1530.4 1129 69.0
CsaV3_4G002140 Cucumis sativus L. HOM05D005483 ORTHO05D006924 0.0e+00 1528.5 1135 69.0
Cfa009459 Carpinus fangiana HOM05D005483 ORTHO05D006924 0.0e+00 1526.9 1129 69.2
MELO3C017824.2 Cucumis melo HOM05D005483 ORTHO05D006924 0.0e+00 1526.5 1136 69.1
Sopen11g017110 Solanum pennellii HOM05D005483 ORTHO05D006924 0.0e+00 1523.8 1122 67.9
Sed0020947 Sechium edule HOM05D005483 ORTHO05D006924 0.0e+00 1521.1 1133 68.2
Solyc11g033282.1 Solanum lycopersicum HOM05D005483 ORTHO05D006924 0.0e+00 1520.4 1122 67.8
TAR622G1101 Trochodendron aralioides HOM05D005483 ORTHO05D006924 0.0e+00 1518.4 1122 68.4
CiPaw.06G110300 Carya illinoinensis HOM05D005483 ORTHO05D006924 0.0e+00 1518.1 1138 69.3
MSTRG.445 Avicennia marina HOM05D005483 ORTHO05D006924 0.0e+00 1515.4 1135 67.0
Cc11_g14910 Coffea canephora HOM05D005483 ORTHO05D006924 0.0e+00 1515.4 1138 68.3
HanXRQChr17g0540341 Helianthus annuus HOM05D005483 ORTHO05D006924 0.0e+00 1503.4 1135 68.4
Rhsim12G0016200 Rhododendron simsii HOM05D005483 ORTHO05D006924 0.0e+00 1495.7 1137 67.0
ClCG07G012020 Citrullus lanatus HOM05D005483 ORTHO05D006924 0.0e+00 1489.6 1105 69.0
ECA246G4063 Erigeron canadensis HOM05D005483 ORTHO05D006924 0.0e+00 1486.9 1115 66.5
Nn4g22102 Nelumbo nucifera HOM05D005483 ORTHO05D006924 0.0e+00 1486.1 1126 66.7
Lsat_1_v5_gn_3_32540 Lactuca sativa HOM05D005483 ORTHO05D006924 0.0e+00 1485.3 1127 66.8
MD13G1132200 Malus domestica HOM05D005483 ORTHO05D006924 0.0e+00 1485.3 1129 67.1
AUR62028835 Chenopodium quinoa HOM05D005483 ORTHO05D006924 0.0e+00 1482.6 1123 68.6
MSTRG.8060 Avicennia marina HOM05D005483 ORTHO05D006924 0.0e+00 1482.2 1137 67.3
SalBow2G2141 Salvia bowleyana HOM05D005483 ORTHO05D006924 0.0e+00 1480.7 1137 66.9
Migut.K01044 Erythranthe guttata HOM05D005483 ORTHO05D006924 0.0e+00 1479.2 1143 67.0
vmacro01010 Vaccinium macrocarpon HOM05D005483 ORTHO05D006924 0.0e+00 1479.2 1136 65.8
Sed0017746 Sechium edule HOM05D005483 ORTHO05D006924 0.0e+00 1477.6 1124 67.0
Phvul.008G003900 Phaseolus vulgaris HOM05D005483 ORTHO05D006924 0.0e+00 1474.1 1071 69.6
Nn3g16247 Nelumbo nucifera HOM05D005483 ORTHO05D006924 0.0e+00 1473.4 1126 67.5
SGA_v2.0_scaffold258G45771 Striga asiatica HOM05D005483 ORTHO05D006924 0.0e+00 1471.1 1140 65.8
Glyma.08G363300 Glycine max HOM05D005483 ORTHO05D006924 0.0e+00 1463.0 1123 66.8
PSO017G1761 Papaver somniferum HOM05D005483 ORTHO05D006924 0.0e+00 1459.5 1124 65.5
Sc11g0000050 Simmondsia chinensis HOM05D005483 ORTHO05D006924 0.0e+00 1458.7 1139 65.1
PSO478G1749 Papaver somniferum HOM05D005483 ORTHO05D006924 0.0e+00 1456.4 1124 65.6
COL.COLO4_08434 Corchorus olitorius HOM05D005483 ORTHO05D006924 0.0e+00 1444.9 1012 73.4
Lalb_Chr10g0091131 Lupinus albus HOM05D005483 ORTHO05D006924 0.0e+00 1442.2 1122 67.5
Glyma.18G298700 Glycine max HOM05D005483 ORTHO05D006924 0.0e+00 1441.8 1122 65.8
HanXRQChr06g0175451 Helianthus annuus HOM05D005483 ORTHO05D006924 0.0e+00 1439.9 1125 65.1
TPR.G9702 Trifolium pratense HOM05D005483 ORTHO05D006924 0.0e+00 1439.1 1073 68.0
Aqoxy5G03055 Aquilegia oxysepala HOM05D005483 ORTHO05D006924 0.0e+00 1438.7 1071 67.2
arahy.Tifrunner.gnm1.ann1.H63XD7 Arachis hypogaea HOM05D005483 ORTHO05D006924 0.0e+00 1438.7 1147 66.3
arahy.Tifrunner.gnm1.ann1.N4LA1V Arachis hypogaea HOM05D005483 ORTHO05D006924 0.0e+00 1438.7 1147 66.3
Sabra01G0048200 Salix brachista HOM05D005483 ORTHO05D006924 0.0e+00 1438.3 1030 70.1
EL10Ac2g02397 Beta vulgaris HOM05D005483 ORTHO05D006924 0.0e+00 1436.8 1119 65.8
Ah.03g135500 Amaranthus hybridus HOM05D005483 ORTHO05D006924 0.0e+00 1425.6 1098 67.8
Lj1g0002578 Lotus japonicus HOM05D005483 ORTHO05D006924 0.0e+00 1417.5 1071 67.2
VMungo1383G1684 Vigna mungo HOM05D005483 ORTHO05D006924 0.0e+00 1398.6 1069 68.8
Ca_04087_v3 Cicer arietinum L. HOM05D005483 ORTHO05D006924 0.0e+00 1390.9 1072 66.2
Psat3g206760 Pisum sativum HOM05D005483 ORTHO05D006924 0.0e+00 1389.0 1035 67.6
Eucgr.G01983 Eucalyptus grandis HOM05D005483 ORTHO05D006924 0.0e+00 1337.4 925 72.6
AUR62005722 Chenopodium quinoa HOM05D005483 ORTHO05D006924 0.0e+00 1330.1 1121 63.2
Medtr7g006760 Medicago truncatula HOM05D005483 ORTHO05D006924 0.0e+00 1314.7 1074 63.5
MBI11_g02503_MAGBIO Magnolia biondii HOM05D005483 ORTHO05D006924 0.0e+00 1302.7 1042 64.5
HPP92_020112 Vanilla planifolia HOM05D005483 ORTHO05D006924 0.0e+00 1302.7 1071 61.2
Lj6C839G6 Lonicera japonica HOM05D005483 ORTHO05D006924 0.0e+00 1301.6 925 69.8
SEGI_17725 Sequoiadendron giganteum HOM05D005483 ORTHO05D006924 0.0e+00 1258.8 1070 59.6
ATR0582G070 Amborella trichopoda HOM05D005483 ORTHO05D006924 0.0e+00 1248.0 1068 58.7
Medtr7g406760 Medicago truncatula HOM05D005483 ORTHO05D006924 0.0e+00 1210.7 896 68.6
TAR374G0614 Trochodendron aralioides HOM05D005483 ORTHO05D006924 0.0e+00 1167.9 934 64.1
Atru.chr12.1443 Acer truncatum HOM05D005483 ORTHO05D006924 0.0e+00 1143.6 822 70.4
CDE05G0204 Ceratophyllum demersum HOM05D005483 ORTHO05D006924 0.0e+00 1082.8 882 62.0
Pp3c14_23090 Physcomitrium patens HOM05D005483 ORTHO05D006924 7.6e-312 1073.5 1072 51.8
Mapoly0029s0137 Marchantia polymorpha HOM05D005483 ORTHO05D006924 6.6e-306 1054.3 1073 51.0
CSS0027672 Camellia sinensis var. sinensis HOM05D005483 ORTHO05D006924 1.8e-303 1046.2 779 67.8
AagrBONN_evm.TU.Sc2ySwM_228.3500 Anthoceros agrestis HOM05D005483 ORTHO05D006924 1.9e-292 1009.6 1071 49.5
SMO116G0229 Selaginella moellendorffii HOM05D005483 ORTHO05D006924 1.3e-282 976.9 1068 48.3
DCAR_026441 Daucus carota HOM05D005483 ORTHO05D006924 8.7e-274 947.6 673 70.3
unitig_22.g6373 Utricularia gibba HOM05D005483 ORTHO05D006924 5.6e-265 918.3 759 62.3
Nitab4.5_0002569g0090 Nicotiana tabacum HOM05D005483 ORTHO05D006924 4.2e-228 795.8 599 67.3
CDE05G1761 Ceratophyllum demersum HOM05D005483 ORTHO05D006924 2.7e-227 793.1 882 51.0
CBR_g38877 Chara braunii HOM05D005483 ORTHO05D006924 1.6e-211 740.7 1085 40.3
Zm00001eb113290 Zea mays HOM05D005483 ORTHO05D006924 4.0e-210 736.1 616 60.7
RcHm_v2.0_Chr4g0402251 Rosa chinensis HOM05D005483 ORTHO05D006924 4.5e-153 546.6 366 73.8
Hma1.2p1_1494F.1_g286880 Hydrangea macrophylla HOM05D005483 ORTHO05D006924 3.9e-133 480.3 421 60.3
DCAR_026440 Daucus carota HOM05D005483 ORTHO05D006924 2.3e-125 454.5 359 62.7
Os11g0528200 Oryza sativa ssp. japonica HOM05D005483 ORTHO05D006924 2.8e-107 394.4 356 56.7
Cre01.g018050 Chlamydomonas reinhardtii HOM05D005483 ORTHO05D006924 3.7e-99 367.5 1185 27.7
unitig_22.g6372 Utricularia gibba HOM05D005483 ORTHO05D006924 7.0e-90 336.7 250 66.0
MCO16G196 Micromonas commoda HOM05D005483 ORTHO05D006924 6.2e-86 323.6 1145 26.8
Actinidia22108 Actinidia chinensis HOM05D005483 ORTHO05D006924 1.2e-81 309.3 344 54.4
SEGI_02355 Sequoiadendron giganteum HOM05D005483 ORTHO05D006924 1.9e-71 275.4 365 44.7
Actinidia22109 Actinidia chinensis HOM05D005483 ORTHO05D006924 1.6e-70 272.3 315 51.1
Oeu011729.2 Olea europaea HOM05D005483 ORTHO05D000122 5.1e-64 250.8 333 45.3
SGA_v2.0_scaffold98G29280 Striga asiatica HOM05D005483 ORTHO05D007482 3.1e-53 214.9 320 44.4
RcHm_v2.0_Chr6g0278911 Rosa chinensis HOM05D005483 ORTHO05D006924 2.6e-28 132.1 106 67.9
Pp3c1_41760 Physcomitrium patens HOM05D005483 ORTHO05D006924 1.9e-26 125.9 666 22.4
RcHm_v2.0_Chr5g0056851 Rosa chinensis HOM05D005483 ORTHO05D006924 1.9e-26 125.9 70 78.6
DCAR_029048 Daucus carota HOM05D005483 ORTHO05D006924 5.5e-26 124.4 108 68.5
Lj6C839G5 Lonicera japonica HOM05D005483 ORTHO05D006924 7.2e-26 124.0 150 47.3
RcHm_v2.0_Chr7g0226991 Rosa chinensis HOM05D005483 ORTHO05D006924 9.3e-26 123.6 68 79.4
RcHm_v2.0_Chr2g0133761 Rosa chinensis HOM05D005483 ORTHO05D006924 3.0e-24 118.6 86 74.4
RcHm_v2.0_Chr2g0126951 Rosa chinensis HOM05D005483 ORTHO05D006924 2.2e-22 112.5 86 70.9
Lj2g0025677 Lotus japonicus HOM05D005483 ORTHO05D007091 2.2e-06 59.3 79 41.8


User provided reference genes

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