Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung01858 Brassica carinata HOM05D005867 ORTHO05D007273 4.5e-103 377.9 184 100.0
A02p01670 Brassica napus HOM05D005867 ORTHO05D007273 1.0e-102 376.7 184 99.5
C02p05880 Brassica napus HOM05D005867 ORTHO05D007273 1.0e-102 376.7 184 99.5
BolC2t06533H Brassica oleracea HOM05D005867 ORTHO05D007273 1.0e-102 376.7 184 99.5
BraA02t05146Z Brassica rapa HOM05D005867 ORTHO05D007273 1.0e-102 376.7 184 99.5
BcaNung01174 Brassica carinata HOM05D005867 ORTHO05D007273 4.2e-101 371.3 184 97.8
BcaC04g19155 Brassica carinata HOM05D002203 ORTHO05D007273 7.2e-101 370.5 184 96.7
Thhalv10014788m.g Eutrema salsugineum HOM05D005867 ORTHO05D007273 7.2e-101 370.5 184 96.7
Sp6g30910 Schrenkiella parvula HOM05D005867 ORTHO05D007273 2.1e-100 369.0 184 95.7
AL6G23670 Arabidopsis lyrata HOM05D005867 ORTHO05D007273 6.1e-100 367.5 184 96.2
Carub.0006s1124 Capsella rubella HOM05D005867 ORTHO05D007273 1.8e-99 365.9 184 95.7
AT5G13070 Arabidopsis thaliana HOM05D005867 ORTHO05D007273 4.0e-99 364.8 184 95.1
CARHR200400 Cardamine hirsuta HOM05D005867 ORTHO05D007273 5.2e-99 364.4 184 94.0
BraA10t44575Z Brassica rapa HOM05D005867 ORTHO05D007273 1.2e-98 363.2 184 95.1
A10p25130 Brassica napus HOM05D005867 ORTHO05D007273 1.5e-98 362.8 184 95.1
C09p64030 Brassica napus HOM05D005867 ORTHO05D007273 1.8e-96 355.9 184 92.9
BolC9t59241H Brassica oleracea HOM05D005867 ORTHO05D007273 1.8e-96 355.9 184 92.9
Aa31LG3G14590 Aethionema arabicum HOM05D005867 ORTHO05D007273 2.4e-96 355.5 183 91.3
THA.LOC104804975 Tarenaya hassleriana HOM05D005867 ORTHO05D007273 6.6e-94 347.4 183 88.5
EL10Ac4g10299 Beta vulgaris HOM05D005867 ORTHO05D007273 2.9e-89 332.0 183 82.5
COL.COLO4_24845 Corchorus olitorius HOM05D005867 ORTHO05D007273 4.9e-89 331.3 180 84.4
Thecc.09G227900 Theobroma cacao HOM05D005867 ORTHO05D007273 9.2e-88 327.0 181 81.8
Cpa.g.sc84.80 Carica papaya HOM05D005867 ORTHO05D007273 1.2e-87 326.6 183 81.4
Ah.04g161870 Amaranthus hybridus HOM05D005867 ORTHO05D007273 2.7e-87 325.5 180 81.1
Gohir.A05G068300 Gossypium hirsutum HOM05D005867 ORTHO05D007273 2.7e-87 325.5 181 82.3
Gohir.D05G071300 Gossypium hirsutum HOM05D005867 ORTHO05D007273 3.5e-87 325.1 181 82.3
AUR62000096 Chenopodium quinoa HOM05D005867 ORTHO05D007273 4.6e-87 324.7 181 80.1
AUR62019269 Chenopodium quinoa HOM05D005867 ORTHO05D007273 4.6e-87 324.7 181 80.1
Gorai.009G072300 Gossypium raimondii HOM05D005867 ORTHO05D007273 4.6e-87 324.7 181 81.8
Duzib168G0296 Durio zibethinus HOM05D005867 ORTHO05D007273 7.8e-87 323.9 181 82.9
Eucgr.J00791 Eucalyptus grandis HOM05D005867 ORTHO05D007273 7.8e-87 323.9 180 82.2
Sabra01G0013100 Salix brachista HOM05D005867 ORTHO05D007273 7.8e-87 323.9 180 81.7
TAR636G0304 Trochodendron aralioides HOM05D005867 ORTHO05D007273 7.8e-87 323.9 183 80.9
Ah.06g193630 Amaranthus hybridus HOM05D005867 ORTHO05D007273 1.0e-86 323.6 180 80.6
SHI29727 Sapria himalayana HOM05D005867 ORTHO05D007273 1.0e-86 323.6 183 80.3
PGR119G1510 Punica granatum HOM05D005867 ORTHO05D007273 1.3e-86 323.2 180 81.7
Dinv36283 Davidia involucrata HOM05D005867 ORTHO05D007273 1.7e-86 322.8 183 79.8
TAR633G2552 Trochodendron aralioides HOM05D005867 ORTHO05D007273 1.7e-86 322.8 183 79.8
GSVIVG01025306001 Vitis vinifera HOM05D005867 ORTHO05D007273 1.7e-86 322.8 180 80.6
VMungo1080G0295 Vigna mungo HOM05D005867 ORTHO05D007273 2.3e-86 322.4 181 81.2
Ciclev10016610m.g Citrus clementina HOM05D005867 ORTHO05D007273 3.0e-86 322.0 180 82.2
Phvul.L010243 Phaseolus vulgaris HOM05D005867 ORTHO05D007273 3.0e-86 322.0 181 81.8
CANSAT54G1708 Cannabis sativa HOM05D005867 ORTHO05D007273 5.0e-86 321.2 183 79.8
ECA238G1591 Erigeron canadensis HOM05D005867 ORTHO05D007273 6.6e-86 320.9 181 79.0
Lsat_1_v5_gn_2_100781 Lactuca sativa HOM05D005867 ORTHO05D007273 6.6e-86 320.9 181 80.1
Rhsim13G0224100 Rhododendron simsii HOM05D005867 ORTHO05D007273 6.6e-86 320.9 183 78.1
Potri.001G018500 Populus trichocarpa HOM05D005867 ORTHO05D007273 1.1e-85 320.1 180 81.1
DCAR_002056 Daucus carota HOM05D005867 ORTHO05D007273 1.5e-85 319.7 180 78.3
Atru.chr3.2589 Acer truncatum HOM05D005867 ORTHO05D007273 2.5e-85 318.9 183 80.3
Peaxi162Scf00029g00326 Petunia axillaris HOM05D005867 ORTHO05D007273 2.5e-85 318.9 180 78.9
Cfa009733 Carpinus fangiana HOM05D005867 ORTHO05D007273 3.3e-85 318.5 183 79.2
MELO3C015200.2 Cucumis melo HOM05D005867 ORTHO05D007273 3.3e-85 318.5 181 79.6
QL01p005337 Quercus lobata HOM05D005867 ORTHO05D007273 3.3e-85 318.5 180 79.4
CsaV3_1G042730 Cucumis sativus L. HOM05D005867 ORTHO05D007273 4.3e-85 318.2 181 79.6
Manes.06G166900 Manihot esculenta HOM05D005867 ORTHO05D007273 4.3e-85 318.2 180 79.4
Actinidia16309 Actinidia chinensis HOM05D005867 ORTHO05D007273 5.6e-85 317.8 180 80.0
Cc01_g01980 Coffea canephora HOM05D005867 ORTHO05D007273 5.6e-85 317.8 183 78.7
HanXRQChr02g0036871 Helianthus annuus HOM05D005867 ORTHO05D007273 5.6e-85 317.8 181 78.5
CSS0048722 Camellia sinensis var. sinensis HOM05D005867 ORTHO05D007273 9.5e-85 317.0 180 77.8
ClCG03G013300 Citrullus lanatus HOM05D005867 ORTHO05D007273 9.5e-85 317.0 181 79.0
Glyma.15G033100 Glycine max HOM05D005867 ORTHO05D007273 9.5e-85 317.0 181 80.1
Nitab4.5_0008647g0010 Nicotiana tabacum HOM05D005867 ORTHO05D007273 9.5e-85 317.0 180 80.0
Sc06g0004490 Simmondsia chinensis HOM05D005867 ORTHO05D007273 1.2e-84 316.6 180 81.1
RcHm_v2.0_Chr5g0077191 Rosa chinensis HOM05D005867 ORTHO05D007273 1.6e-84 316.2 180 80.6
Prupe.6G023200 Prunus persica HOM05D005867 ORTHO05D007273 2.1e-84 315.8 180 79.4
Migut.D00576 Erythranthe guttata HOM05D005867 ORTHO05D007273 4.7e-84 314.7 181 79.6
Dinv08036 Davidia involucrata HOM05D005867 ORTHO05D007273 6.2e-84 314.3 178 80.9
Sed0004394 Sechium edule HOM05D005867 ORTHO05D007273 6.2e-84 314.3 181 78.5
CAN.G575.64 Capsicum annuum HOM05D005867 ORTHO05D007273 8.0e-84 313.9 180 78.9
HanXRQChr14g0453051 Helianthus annuus HOM05D005867 ORTHO05D007273 8.0e-84 313.9 181 77.9
PGSC0003DMG400023838 Solanum tuberosum HOM05D005867 ORTHO05D007273 8.0e-84 313.9 180 79.4
Nitab4.5_0001925g0100 Nicotiana tabacum HOM05D005867 ORTHO05D007273 1.1e-83 313.5 180 78.9
Sopen12g034670 Solanum pennellii HOM05D005867 ORTHO05D007273 1.1e-83 313.5 180 79.4
Solyc12g100050.2 Solanum lycopersicum HOM05D005867 ORTHO05D007273 1.4e-83 313.2 180 79.4
CiPaw.13G163600 Carya illinoinensis HOM05D005867 ORTHO05D007273 1.8e-83 312.8 183 78.1
Nn2g15416 Nelumbo nucifera HOM05D005867 ORTHO05D007273 2.3e-83 312.4 183 78.7
Nitab4.5_0002766g0030 Nicotiana tabacum HOM05D005867 ORTHO05D007273 2.3e-83 312.4 183 76.5
MD03G1024000 Malus domestica HOM05D005867 ORTHO05D007273 3.1e-83 312.0 180 78.9
MSTRG.17581 Avicennia marina HOM05D005867 ORTHO05D007273 4.0e-83 311.6 180 78.9
Aqoxy1G00241 Aquilegia oxysepala HOM05D005867 ORTHO05D007273 5.2e-83 311.2 181 76.8
Migut.N02304 Erythranthe guttata HOM05D005867 ORTHO05D007273 5.2e-83 311.2 183 77.6
Oeu035742.1 Olea europaea HOM05D005867 ORTHO05D007273 5.2e-83 311.2 180 78.9
Solyc11g061760.3 Solanum lycopersicum HOM05D005867 ORTHO05D007273 6.8e-83 310.8 180 76.7
Sopen11g023660 Solanum pennellii HOM05D005867 ORTHO05D007273 6.8e-83 310.8 180 76.7
Haze_23087 Corylus avellana HOM05D005867 ORTHO05D007273 8.9e-83 310.5 174 82.2
TWI60G1455 Tripterygium wilfordii HOM05D005867 ORTHO05D007273 8.9e-83 310.5 183 77.6
FAN25G0812 Fragaria x ananassa HOM05D005867 ORTHO05D007273 1.2e-82 310.1 180 78.9
FvH4_3g43090 Fragaria vesca HOM05D005867 ORTHO05D007273 2.0e-82 309.3 180 78.3
FAN11G1123 Fragaria x ananassa HOM05D005867 ORTHO05D007273 2.0e-82 309.3 180 78.3
Nitab4.5_0008868g0020 Nicotiana tabacum HOM05D005867 ORTHO05D007273 2.0e-82 309.3 183 76.5
MSTRG.21396 Avicennia marina HOM05D005867 ORTHO05D007273 2.6e-82 308.9 180 77.8
PGSC0003DMG400013588 Solanum tuberosum HOM05D005867 ORTHO05D007273 2.6e-82 308.9 183 74.9
MD11G1028900 Malus domestica HOM05D005867 ORTHO05D007273 7.5e-82 307.4 180 77.2
SalBow4G1382 Salvia bowleyana HOM05D005867 ORTHO05D007273 1.3e-81 306.6 180 76.7
SGA_v2.0_scaffold8G04610 Striga asiatica HOM05D005867 ORTHO05D007273 1.3e-81 306.6 180 77.2
TWI34G0922 Tripterygium wilfordii HOM05D005867 ORTHO05D007273 1.3e-81 306.6 172 83.7
FAN21G2433 Fragaria x ananassa HOM05D005867 ORTHO05D007273 2.9e-81 305.4 180 77.2
SalBow4G0034 Salvia bowleyana HOM05D005867 ORTHO05D007273 3.7e-81 305.1 180 76.1
FAN16G1279 Fragaria x ananassa HOM05D005867 ORTHO05D007273 1.1e-80 303.5 180 77.8
PSO384G4422 Papaver somniferum HOM05D005867 ORTHO05D007273 4.1e-80 301.6 182 74.7
Oeu052048.1 Olea europaea HOM05D005867 ORTHO05D007273 1.2e-79 300.1 180 75.6
PSO339G4569 Papaver somniferum HOM05D005867 ORTHO05D007273 6.0e-79 297.7 182 74.2
arahy.Tifrunner.gnm1.ann1.V9D8IR Arachis hypogaea HOM05D005867 ORTHO05D007273 1.7e-78 296.2 181 74.6
Lalb_Chr14g0372181 Lupinus albus HOM05D005867 ORTHO05D007273 1.7e-78 296.2 181 74.6
arahy.Tifrunner.gnm1.ann1.2D2P15 Arachis hypogaea HOM05D005867 ORTHO05D007273 3.9e-78 295.0 181 74.0
unitig_21.g20645 Utricularia gibba HOM05D005867 ORTHO05D007273 1.1e-77 293.5 180 71.7
Duzib150G0087 Durio zibethinus HOM05D005867 ORTHO05D007273 3.3e-77 292.0 181 77.3
TPR.G6870 Trifolium pratense HOM05D005867 ORTHO05D007273 1.8e-75 286.2 181 72.4
Lj3g0003495 Lotus japonicus HOM05D005867 ORTHO05D007273 4.0e-75 285.0 181 72.4
Ca_01285_v3 Cicer arietinum L. HOM05D005867 ORTHO05D007273 5.2e-75 284.6 181 72.4
Cfa009734 Carpinus fangiana HOM05D005867 ORTHO05D007273 2.6e-74 282.3 183 69.4
MBI17_g30524_MAGBIO Magnolia biondii HOM05D005867 ORTHO05D007273 2.6e-74 282.3 173 72.8
Psat5g287440 Pisum sativum HOM05D005867 ORTHO05D007273 3.4e-74 282.0 181 71.8
Medtr1g058050 Medicago truncatula HOM05D005867 ORTHO05D007273 9.9e-74 280.4 181 70.7
Medtr2g098170 Medicago truncatula HOM05D005867 ORTHO05D007273 6.4e-73 277.7 181 70.2
Medtr8g096810 Medicago truncatula HOM05D005867 ORTHO05D007273 8.3e-73 277.3 181 69.6
Medtr2g017985 Medicago truncatula HOM05D005867 ORTHO05D007273 1.4e-72 276.6 181 69.1
CiPaw.13G163500 Carya illinoinensis HOM05D005867 ORTHO05D007273 7.8e-71 270.8 181 66.9
ATR0605G298 Amborella trichopoda HOM05D005867 ORTHO05D007273 3.0e-70 268.9 183 66.1
QL01p005297 Quercus lobata HOM05D005867 ORTHO05D007273 7.3e-69 264.2 180 65.0
Mapoly0061s0125 Marchantia polymorpha HOM05D005867 ORTHO05D007273 1.2e-66 256.9 184 59.8
SMO147G0033 Selaginella moellendorffii HOM05D005867 ORTHO05D007273 4.0e-59 231.9 181 57.5
Pp3c14_26010 Physcomitrium patens HOM05D005867 ORTHO05D007273 9.3e-56 220.7 182 52.7
Os02g0717900 Oryza sativa ssp. japonica HOM05D005867 ORTHO05D007273 4.6e-55 218.4 186 53.8
MBI01_g27622_MAGBIO Magnolia biondii HOM05D005867 ORTHO05D007273 1.0e-54 217.2 172 62.2
Pp3c1_37310 Physcomitrium patens HOM05D005867 ORTHO05D007273 3.0e-54 215.7 185 53.0
CBR_g20418 Chara braunii HOM05D005867 ORTHO05D007273 3.3e-53 212.2 175 54.3
HPP92_022794 Vanilla planifolia HOM05D005867 ORTHO05D007273 1.8e-46 189.9 151 57.0
Os09g0486000 Oryza sativa ssp. japonica HOM05D005867 ORTHO05D007273 4.5e-42 175.3 177 50.3
Lj2P647T17 Lonicera japonica HOM05D005867 ORTHO05D007273 1.8e-35 153.3 89 78.7
Zm00001eb316590 Zea mays HOM05D005867 ORTHO05D007273 7.2e-32 141.4 172 44.2
Mapoly0008s0230 Marchantia polymorpha HOM05D005867 ORTHO05D254737 2.2e-25 119.8 158 37.3
Zm00001eb189280 Zea mays HOM05D005867 ORTHO05D007273 1.4e-24 117.1 87 62.1
Actinidia28459 Actinidia chinensis HOM05D005867 ORTHO05D055216 4.1e-19 99.0 60 76.7
Cfa022043 Carpinus fangiana HOM05D002321 ORTHO05D006940 1.6e-07 60.5 88 36.4


User provided reference genes

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