Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung01738 Brassica carinata HOM05D007521 ORTHO05D009387 2.7e-135 485.3 245 100.0
C01p13990 Brassica napus HOM05D007521 ORTHO05D009387 2.9e-113 412.1 246 87.4
BolC1t01366H Brassica oleracea HOM05D007521 ORTHO05D009387 2.9e-113 412.1 246 87.4
BraA01t01121Z Brassica rapa HOM05D007521 ORTHO05D009387 6.7e-110 401.0 246 85.8
A01p11790 Brassica napus HOM05D007521 ORTHO05D009387 4.8e-108 394.8 246 84.6
Sp7g18440 Schrenkiella parvula HOM05D007521 ORTHO05D009387 1.2e-106 390.2 249 82.7
BcaC09g51354 Brassica carinata HOM05D007521 ORTHO05D009387 3.4e-106 388.7 246 85.0
CARHR226760 Cardamine hirsuta HOM05D007521 ORTHO05D009387 9.0e-99 364.0 243 78.6
AL7G33920 Arabidopsis lyrata HOM05D007521 ORTHO05D009387 5.0e-97 358.2 249 78.3
Carub.0007s2116 Capsella rubella HOM05D007521 ORTHO05D009387 1.9e-93 346.3 247 73.7
Aa31LG6G2400 Aethionema arabicum HOM05D007521 ORTHO05D009387 9.1e-83 310.8 255 65.5
THA.LOC104811673 Tarenaya hassleriana HOM05D007521 ORTHO05D009387 8.2e-68 261.2 256 59.4
Thhalv10026093m.g Eutrema salsugineum HOM05D007521 ORTHO05D009387 2.0e-66 256.5 199 71.4
AT4G19985 Arabidopsis thaliana HOM05D007521 ORTHO05D009387 3.4e-61 239.2 184 70.7
Duzib114G0131 Durio zibethinus HOM05D007521 ORTHO05D009387 7.0e-51 204.9 262 44.3
Gorai.009G291900 Gossypium raimondii HOM05D007521 ORTHO05D009387 7.0e-51 204.9 250 47.2
CiPaw.08G156100 Carya illinoinensis HOM05D007521 ORTHO05D009387 4.5e-50 202.2 246 48.4
QL08p065346 Quercus lobata HOM05D007521 ORTHO05D009387 4.5e-50 202.2 244 47.5
Gohir.D05G278400 Gossypium hirsutum HOM05D007521 ORTHO05D009387 5.9e-50 201.8 250 46.4
Cpa.g.sc65.80 Carica papaya HOM05D007521 ORTHO05D009387 7.8e-50 201.4 250 45.2
Gohir.A05G276700 Gossypium hirsutum HOM05D007521 ORTHO05D009387 7.8e-50 201.4 250 46.4
Ciclev10033598m.g Citrus clementina HOM05D007521 ORTHO05D009387 1.5e-48 197.2 261 48.7
Potri.019G065400 Populus trichocarpa HOM05D007521 ORTHO05D009387 7.3e-48 194.9 251 47.0
Lalb_Chr11g0067611 Lupinus albus HOM05D007521 ORTHO05D009387 1.6e-47 193.7 242 43.4
TWI09G0709 Tripterygium wilfordii HOM05D007521 ORTHO05D009387 1.6e-47 193.7 243 44.4
GSVIVG01032870001 Vitis vinifera HOM05D007521 ORTHO05D009387 1.6e-47 193.7 258 46.9
Thecc.10G187600 Theobroma cacao HOM05D007521 ORTHO05D009387 1.0e-46 191.0 250 45.2
RcHm_v2.0_Chr1g0372781 Rosa chinensis HOM05D007521 ORTHO05D009387 4.0e-46 189.1 256 44.9
FAN10G3062 Fragaria x ananassa HOM05D007521 ORTHO05D009387 1.5e-45 187.2 252 44.8
Glyma.04G224700 Glycine max HOM05D007521 ORTHO05D009387 7.5e-45 184.9 233 44.6
Prupe.2G267400 Prunus persica HOM05D007521 ORTHO05D009387 7.5e-45 184.9 254 44.1
arahy.Tifrunner.gnm1.ann1.Q2LGCQ Arachis hypogaea HOM05D007521 ORTHO05D009387 1.3e-44 184.1 238 44.1
MD07G1238600 Malus domestica HOM05D007521 ORTHO05D009387 1.7e-44 183.7 256 43.8
FvH4_7g26320 Fragaria vesca HOM05D007521 ORTHO05D009387 2.2e-44 183.3 252 44.8
CANSAT56G2803 Cannabis sativa HOM05D007521 ORTHO05D009387 2.9e-44 183.0 246 45.5
TPR.G13979 Trifolium pratense HOM05D007521 ORTHO05D009387 4.9e-44 182.2 244 45.5
Phvul.009G041300 Phaseolus vulgaris HOM05D007521 ORTHO05D009387 3.2e-43 179.5 236 47.0
FAN06G0083 Fragaria x ananassa HOM05D007521 ORTHO05D009387 9.2e-43 177.9 261 43.7
Medtr3g093540 Medicago truncatula HOM05D007521 ORTHO05D009387 9.2e-43 177.9 259 42.9
TAR636G2090 Trochodendron aralioides HOM05D007521 ORTHO05D009387 9.2e-43 177.9 210 50.5
Ca_16847_v3 Cicer arietinum L. HOM05D006307 ORTHO05D008123 1.2e-42 177.6 234 45.7
Eucgr.G03172 Eucalyptus grandis HOM05D007521 ORTHO05D009387 1.2e-42 177.6 249 43.0
Lsat_1_v5_gn_8_11100 Lactuca sativa HOM05D007521 ORTHO05D009387 2.0e-42 176.8 214 46.7
Nn2g10221 Nelumbo nucifera HOM05D007521 ORTHO05D009387 2.7e-42 176.4 210 49.5
PSO384G1785 Papaver somniferum HOM05D007521 ORTHO05D009387 5.9e-42 175.3 210 46.7
Psat5g070120 Pisum sativum HOM05D007521 ORTHO05D009387 1.0e-41 174.5 238 44.1
PGSC0003DMG400011658 Solanum tuberosum HOM05D007521 ORTHO05D009387 1.7e-41 173.7 230 45.2
Lj1g0021108 Lotus japonicus HOM05D007521 ORTHO05D009387 8.6e-41 171.4 244 45.1
Nitab4.5_0011372g0030 Nicotiana tabacum HOM05D007521 ORTHO05D009387 1.1e-40 171.0 217 46.1
ECA233G6052 Erigeron canadensis HOM05D007521 ORTHO05D009387 1.5e-40 170.6 214 46.3
VMungo1309G1947 Vigna mungo HOM05D006307 ORTHO05D008123 1.5e-40 170.6 236 44.1
PSO339G2910 Papaver somniferum HOM05D007521 ORTHO05D009387 1.9e-40 170.2 210 46.2
Sabra19G0079100 Salix brachista HOM05D007521 ORTHO05D009387 2.5e-40 169.9 254 42.5
vmacro09945 Vaccinium macrocarpon HOM05D006307 ORTHO05D008123 4.3e-40 169.1 216 46.8
Atru.BG.268.p Acer truncatum HOM05D007521 ORTHO05D009387 5.6e-40 168.7 208 46.6
Dinv34514 Davidia involucrata HOM05D007521 ORTHO05D009387 5.6e-40 168.7 212 46.7
Cc02_g05020 Coffea canephora HOM05D007521 ORTHO05D009387 3.6e-39 166.0 208 46.6
Hma1.2p1_0264F.1_g105770 Hydrangea macrophylla HOM05D007521 ORTHO05D009387 1.1e-38 164.5 256 42.6
PGR142G4361 Punica granatum HOM05D007521 ORTHO05D009387 1.1e-38 164.5 242 41.3
Migut.F00560 Erythranthe guttata HOM05D007521 ORTHO05D009387 2.3e-38 163.3 211 46.9
Cc02_g04870 Coffea canephora HOM05D007521 ORTHO05D009387 4.0e-38 162.5 208 45.7
CiPaw.08G155800 Carya illinoinensis HOM05D007521 ORTHO05D009387 6.8e-38 161.8 246 43.9
Nitab4.5_0000375g0330 Nicotiana tabacum HOM05D007521 ORTHO05D009387 2.6e-37 159.8 229 44.1
HanXRQChr08g0223011 Helianthus annuus HOM05D007521 ORTHO05D009387 3.4e-37 159.5 213 44.1
MSTRG.8869 Avicennia marina HOM05D007521 ORTHO05D009387 4.4e-37 159.1 210 43.3
Actinidia31757 Actinidia chinensis HOM05D007521 ORTHO05D009387 2.9e-36 156.4 219 44.3
CDE11G1245 Ceratophyllum demersum HOM05D007521 ORTHO05D009387 9.2e-35 151.4 172 47.1
EL10Ac2g02694 Beta vulgaris HOM05D007521 ORTHO05D009387 1.6e-34 150.6 205 44.4
Sc11g0006120 Simmondsia chinensis HOM05D007521 ORTHO05D009387 2.7e-34 149.8 214 42.5
arahy.Tifrunner.gnm1.ann1.RI9J7M Arachis hypogaea HOM05D006307 ORTHO05D008123 4.6e-34 149.1 238 39.5
Aqoxy4G03316 Aquilegia oxysepala HOM05D007521 ORTHO05D009387 2.3e-33 146.7 208 45.2
unitig_37.g11916 Utricularia gibba HOM05D007521 ORTHO05D009387 1.5e-32 144.1 228 39.5
Zm00001eb284340 Zea mays HOM05D007521 ORTHO05D009387 4.3e-32 142.5 213 42.3
ATR1127G230 Amborella trichopoda HOM05D007521 ORTHO05D009387 2.1e-31 140.2 210 41.4
CSS0047724 Camellia sinensis var. sinensis HOM05D007521 ORTHO05D009387 3.6e-31 139.4 183 47.0
SGA_v2.0_scaffold60G20871 Striga asiatica HOM05D006307 ORTHO05D008123 1.8e-30 137.1 255 38.4
Peaxi162Scf00167g01120 Petunia axillaris HOM05D007521 ORTHO05D009387 2.4e-27 126.7 188 43.1
DCAR_018052 Daucus carota HOM05D006307 ORTHO05D009387 7.8e-26 121.7 193 41.5
Cfa001178 Carpinus fangiana HOM05D007521 ORTHO05D009387 8.6e-25 118.2 183 42.1
COL.COLO4_19497 Corchorus olitorius HOM05D007521 ORTHO05D009387 4.0e-22 109.4 184 38.0
HPP92_019762 Vanilla planifolia HOM05D007521 ORTHO05D009387 9.9e-21 104.8 187 39.0
AagrBONN_evm.TU.Sc2ySwM_228.2023 Anthoceros agrestis HOM05D007521 ORTHO05D009387 1.6e-18 97.4 199 35.2
Manes.10G004400 Manihot esculenta HOM05D007521 ORTHO05D009387 4.6e-18 95.9 181 39.8
Actinidia07775 Actinidia chinensis HOM05D007521 ORTHO05D009387 7.8e-18 95.1 80 58.8
Pp3c3_11210 Physcomitrium patens HOM05D007521 ORTHO05D009387 1.3e-17 94.4 207 32.9
Oeu001369.2 Olea europaea HOM05D007521 ORTHO05D009387 3.9e-17 92.8 156 42.3
Mapoly0070s0078 Marchantia polymorpha HOM05D007521 ORTHO05D009387 6.6e-17 92.0 212 35.8
Solyc05g052170.4 Solanum lycopersicum HOM05D007521 ORTHO05D009387 3.3e-16 89.7 168 37.5
Sopen05g030700 Solanum pennellii HOM05D007521 ORTHO05D009387 3.3e-16 89.7 164 40.2
Ah.12g064700 Amaranthus hybridus HOM05D007521 ORTHO05D009387 2.1e-15 87.0 62 64.5
Gohir.D10G155835 Gossypium hirsutum HOM05D007521 ORTHO05D009387 8.1e-15 85.1 58 65.5
Hma1.2p1_0264F.1_g105780 Hydrangea macrophylla HOM05D007521 ORTHO05D009387 4.0e-14 82.8 63 63.5
Lj8C51T1 Lonicera japonica HOM05D007521 ORTHO05D009387 4.0e-14 82.8 153 38.6
SMO356G0638 Selaginella moellendorffii HOM05D007521 ORTHO05D009387 1.2e-13 81.3 84 47.6
Gorai.007G054900 Gossypium raimondii HOM05D007521 ORTHO05D009387 2.2e-12 77.0 58 58.6
Hund13426 Selenicereus undatus HOM05D007521 ORTHO05D009387 8.4e-12 75.1 257 27.2
CBR_g4502 Chara braunii HOM05D007521 ORTHO05D009387 1.9e-11 73.9 86 40.7
Gorai.011G175800 Gossypium raimondii HOM05D007521 ORTHO05D009387 7.1e-11 72.0 58 56.9
Cre10.g464264 Chlamydomonas reinhardtii HOM05D007521 ORTHO05D009387 1.6e-10 70.9 89 39.3
Actinidia01020 Actinidia chinensis HOM05D007521 ORTHO05D009387 2.3e-09 67.0 112 43.8
Gohir.D11G050600 Gossypium hirsutum HOM05D007521 ORTHO05D009387 3.0e-09 66.6 50 58.0
SEGI_20264 Sequoiadendron giganteum HOM05D007521 ORTHO05D009387 9.6e-08 61.6 44 59.1
SEGI_30344 Sequoiadendron giganteum HOM05D007521 ORTHO05D009387 6.2e-07 58.9 166 32.5
MBI15_g36681_MAGBIO Magnolia biondii HOM05D003003 ORTHO05D008343 8.1e-07 58.5 81 38.3
Nn2g10236 Nelumbo nucifera HOM05D003003 ORTHO05D008343 8.1e-07 58.5 95 33.7
Atru.chr8.74 Acer truncatum HOM05D003003 ORTHO05D008343 1.4e-06 57.8 81 37.0
ClCG04G006230 Citrullus lanatus HOM05D003003 ORTHO05D008343 1.4e-06 57.8 90 34.4
Migut.J00015 Erythranthe guttata HOM05D003003 ORTHO05D008343 1.4e-06 57.8 85 36.5
MD04G1177300 Malus domestica HOM05D003003 ORTHO05D008343 1.4e-06 57.8 89 37.1
Nitab4.5_0001215g0150 Nicotiana tabacum HOM05D003003 ORTHO05D008343 1.4e-06 57.8 81 35.8
Dinv16947 Davidia involucrata HOM05D003003 ORTHO05D008343 1.8e-06 57.4 86 37.2
Peaxi162Scf00374g00029 Petunia axillaris HOM05D003003 ORTHO05D008343 1.8e-06 57.4 81 34.6
Potri.016G140000 Populus trichocarpa HOM05D003003 ORTHO05D008343 1.8e-06 57.4 81 37.0
CANSAT21G0154 Cannabis sativa HOM05D003003 ORTHO05D008343 2.4e-06 57.0 80 37.5
Duzib151G0009 Durio zibethinus HOM05D003003 ORTHO05D008343 2.4e-06 57.0 89 36.0
FvH4_6g09480 Fragaria vesca HOM05D003003 ORTHO05D008343 2.4e-06 57.0 81 37.0
Gohir.D02G106600 Gossypium hirsutum HOM05D003003 ORTHO05D008343 2.4e-06 57.0 91 36.3
Gorai.005G121100 Gossypium raimondii HOM05D003003 ORTHO05D008343 2.4e-06 57.0 91 36.3
MCO12G079 Micromonas commoda HOM05D003003 ORTHO05D008343 2.4e-06 57.0 90 33.3
Solyc10g074910.2 Solanum lycopersicum HOM05D003003 ORTHO05D008343 2.4e-06 57.0 81 34.6
Sopen10g027400 Solanum pennellii HOM05D003003 ORTHO05D008343 2.4e-06 57.0 81 34.6
BcaC05g27931 Brassica carinata HOM05D003003 ORTHO05D008343 3.1e-06 56.6 83 34.9
C05p39360 Brassica napus HOM05D005120 ORTHO05D006174 3.1e-06 56.6 83 34.9
BolC5t32672H Brassica oleracea HOM05D005120 ORTHO05D006174 3.1e-06 56.6 83 34.9
BraA05t21414Z Brassica rapa HOM05D003003 ORTHO05D008343 3.1e-06 56.6 83 34.9
CDE04G1691 Ceratophyllum demersum HOM05D000172 ORTHO05D000273 3.1e-06 56.6 152 30.3
CsaV3_4G027340 Cucumis sativus L. HOM05D003003 ORTHO05D008343 3.1e-06 56.6 90 33.3
DCAR_023966 Daucus carota HOM05D003003 ORTHO05D008343 3.1e-06 56.6 83 34.9
ECA248G3306 Erigeron canadensis HOM05D003003 ORTHO05D008343 3.1e-06 56.6 81 35.8
HanXRQChr01g0000501 Helianthus annuus HOM05D003003 ORTHO05D008343 3.1e-06 56.6 89 34.8
Nitab4.5_0007589g0030 Nicotiana tabacum HOM05D003003 ORTHO05D008343 3.1e-06 56.6 81 34.6
QL07p031603 Quercus lobata HOM05D003003 ORTHO05D008343 3.1e-06 56.6 81 37.0
SMO230G0119 Selaginella moellendorffii HOM05D003003 ORTHO05D008343 3.1e-06 56.6 89 36.0
Aa31LG2G13930 Aethionema arabicum HOM05D003003 ORTHO05D008343 4.0e-06 56.2 87 35.6
CAN.G659.15 Capsicum annuum HOM05D003003 ORTHO05D008343 4.0e-06 56.2 81 34.6
Ciclev10012371m.g Citrus clementina HOM05D003003 ORTHO05D008343 4.0e-06 56.2 80 35.0
Haze_21204 Corylus avellana HOM05D003003 ORTHO05D008343 4.0e-06 56.2 75 37.3
Manes.08G168900 Manihot esculenta HOM05D003003 ORTHO05D008343 4.0e-06 56.2 81 34.6
Sabra04G0156600 Salix brachista HOM05D003003 ORTHO05D008343 4.0e-06 56.2 81 35.8
THA.LOC104806235 Tarenaya hassleriana HOM05D003003 ORTHO05D008343 4.0e-06 56.2 93 34.4
AagrBONN_evm.TU.Sc2ySwM_368.1216 Anthoceros agrestis HOM05D003003 ORTHO05D009423 5.3e-06 55.8 83 34.9
CDE06G1541 Ceratophyllum demersum HOM05D003003 ORTHO05D008343 5.3e-06 55.8 80 36.2
FAN14G2421 Fragaria x ananassa HOM05D003003 ORTHO05D008343 5.3e-06 55.8 81 35.8
Gohir.A02G089500 Gossypium hirsutum HOM05D003003 ORTHO05D008343 5.3e-06 55.8 81 35.8
MD12G1192400 Malus domestica HOM05D003003 ORTHO05D008343 5.3e-06 55.8 81 35.8
Phvul.008G079900 Phaseolus vulgaris HOM05D003003 ORTHO05D008343 5.3e-06 55.8 81 34.6
EL10Ac7g17135 Beta vulgaris HOM05D003003 ORTHO05D008343 6.9e-06 55.5 80 36.2
CSS0014362 Camellia sinensis var. sinensis HOM05D003003 ORTHO05D008343 6.9e-06 55.5 81 34.6
AUR62006445 Chenopodium quinoa HOM05D003003 ORTHO05D008343 6.9e-06 55.5 80 36.2
AUR62029798 Chenopodium quinoa HOM05D003003 ORTHO05D008343 6.9e-06 55.5 80 36.2
Cc06_g00240 Coffea canephora HOM05D003003 ORTHO05D008343 6.9e-06 55.5 81 34.6
Eucgr.K01296 Eucalyptus grandis HOM05D003003 ORTHO05D008343 6.9e-06 55.5 81 35.8
vmacro20392 Vaccinium macrocarpon HOM05D003003 ORTHO05D008343 6.9e-06 55.5 81 34.6
VMungo1383G2339 Vigna mungo HOM05D003003 ORTHO05D008343 6.9e-06 55.5 81 34.6
GSVIVG01029873001 Vitis vinifera HOM05D003003 ORTHO05D008343 6.9e-06 55.5 81 35.8
ATR1127G143 Amborella trichopoda HOM05D003003 ORTHO05D008343 9.0e-06 55.1 80 36.2
AL1G46140 Arabidopsis lyrata HOM05D003003 ORTHO05D008343 9.0e-06 55.1 81 34.6
AT1G32070 Arabidopsis thaliana HOM05D003003 ORTHO05D008343 9.0e-06 55.1 81 34.6
BcaB03g13769 Brassica carinata HOM05D003003 ORTHO05D008343 9.0e-06 55.1 81 34.6
A05p25290 Brassica napus HOM05D005120 ORTHO05D006174 9.0e-06 55.1 81 34.6
Carub.0001s3039 Capsella rubella HOM05D003003 ORTHO05D008343 9.0e-06 55.1 81 34.6
Mapoly0166s0017 Marchantia polymorpha HOM05D003003 ORTHO05D008343 9.0e-06 55.1 81 35.8
Prupe.6G296900 Prunus persica HOM05D003003 ORTHO05D008343 9.0e-06 55.1 81 34.6
PGR004G0262 Punica granatum HOM05D003003 ORTHO05D008343 9.0e-06 55.1 81 35.8
Rhsim05G0233000 Rhododendron simsii HOM05D003003 ORTHO05D008343 9.0e-06 55.1 81 34.6
Sed0024487 Sechium edule HOM05D003003 ORTHO05D008343 9.0e-06 55.1 81 34.6


User provided reference genes

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