Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung01728 Brassica carinata HOM05D006219 ORTHO05D007562 4.9e-249 864.0 436 100.0
C07p40330 Brassica napus HOM05D006219 ORTHO05D007562 2.6e-226 788.5 440 90.7
A06p37950 Brassica napus HOM05D006219 ORTHO05D007562 4.5e-226 787.7 440 90.7
BcaNung02093 Brassica carinata HOM05D006219 ORTHO05D007562 1.0e-225 786.6 440 90.2
BolC7t44567H Brassica oleracea HOM05D006219 ORTHO05D007562 1.0e-225 786.6 440 90.2
BraA06t26711Z Brassica rapa HOM05D006219 ORTHO05D007562 8.5e-225 783.5 440 90.2
Sp2g20170 Schrenkiella parvula HOM05D006219 ORTHO05D007562 2.0e-213 745.7 440 86.4
Thhalv10004236m.g Eutrema salsugineum HOM05D006219 ORTHO05D007562 3.3e-213 745.0 440 85.2
CARHR185150 Cardamine hirsuta HOM05D006219 ORTHO05D007562 3.7e-204 714.9 442 84.2
AL6G40560 Arabidopsis lyrata HOM05D006219 ORTHO05D007562 1.8e-198 696.0 442 81.4
AT5G28500 Arabidopsis thaliana HOM05D006219 ORTHO05D007562 2.5e-192 675.6 442 81.0
Aa31LG11G8710 Aethionema arabicum HOM05D006219 ORTHO05D007562 3.4e-189 665.2 443 77.2
Carub.0006s2578 Capsella rubella HOM05D006219 ORTHO05D007562 3.6e-183 645.2 401 81.8
THA.LOC104799246 Tarenaya hassleriana HOM05D006219 ORTHO05D007562 6.8e-166 587.8 446 68.2
Aa31LG5G14970 Aethionema arabicum HOM05D006219 ORTHO05D007562 2.0e-165 586.3 441 67.6
CARHR078740 Cardamine hirsuta HOM05D006219 ORTHO05D007562 3.8e-164 582.0 446 68.2
Thhalv10020727m.g Eutrema salsugineum HOM05D006219 ORTHO05D007562 4.2e-163 578.6 451 65.9
BcaC09g47795 Brassica carinata HOM05D006219 ORTHO05D007562 2.7e-162 575.9 450 65.3
Sp3g03390 Schrenkiella parvula HOM05D006219 ORTHO05D007562 7.8e-162 574.3 451 65.9
BolC1t05743H Brassica oleracea HOM05D006219 ORTHO05D007562 1.0e-161 573.9 455 64.6
AT3G04550 Arabidopsis thaliana HOM05D006219 ORTHO05D007562 2.3e-161 572.8 448 66.5
Carub.0003s0370 Capsella rubella HOM05D006219 ORTHO05D007562 1.9e-160 569.7 445 65.4
BraA01t04521Z Brassica rapa HOM05D006219 ORTHO05D007562 2.8e-159 565.8 450 65.8
A01p40850 Brassica napus HOM05D006219 ORTHO05D007562 5.3e-158 561.6 451 65.2
BNapus_Darmor_BZH_scaffold_78p00860 Brassica napus HOM05D006219 ORTHO05D007562 5.3e-158 561.6 451 65.2
AL3G14570 Arabidopsis lyrata HOM05D006219 ORTHO05D007562 5.8e-157 558.1 444 66.0
BcaB04g21366 Brassica carinata HOM05D006219 ORTHO05D007562 7.6e-157 557.8 443 66.4
Cpa.g.sc162.24 Carica papaya HOM05D006219 ORTHO05D007562 1.8e-137 493.4 449 59.9
Duzib128G1627 Durio zibethinus HOM05D006219 ORTHO05D007562 6.7e-137 491.5 405 62.7
Potri.013G044900 Populus trichocarpa HOM05D006219 ORTHO05D007562 5.7e-136 488.4 459 58.8
Gohir.D13G107000 Gossypium hirsutum HOM05D006219 ORTHO05D007562 1.6e-135 486.9 448 58.0
FAN05G4153 Fragaria x ananassa HOM05D006219 ORTHO05D007562 1.4e-134 483.8 449 57.7
Haze_04459 Corylus avellana HOM05D006219 ORTHO05D007562 3.1e-134 482.6 451 59.0
FvH4_6g02280 Fragaria vesca HOM05D006219 ORTHO05D007562 4.0e-134 482.3 447 57.7
Prupe.6G348600 Prunus persica HOM05D006219 ORTHO05D007562 4.0e-134 482.3 461 56.8
Gohir.A13G103800 Gossypium hirsutum HOM05D006219 ORTHO05D007562 9.0e-134 481.1 448 58.0
CiPaw.07G078300 Carya illinoinensis HOM05D006219 ORTHO05D007562 1.2e-133 480.7 450 59.8
FAN02G1274 Fragaria x ananassa HOM05D006219 ORTHO05D007562 1.2e-133 480.7 448 57.8
Cfa006329 Carpinus fangiana HOM05D006219 ORTHO05D007562 1.5e-133 480.3 450 58.2
Gorai.013G120100 Gossypium raimondii HOM05D006219 ORTHO05D007562 1.5e-133 480.3 450 57.6
Manes.09G149100 Manihot esculenta HOM05D006219 ORTHO05D007562 2.6e-133 479.6 457 57.3
Thecc.05G275300 Theobroma cacao HOM05D006219 ORTHO05D007562 4.5e-133 478.8 448 58.5
Atru.chr2.897 Acer truncatum HOM05D006219 ORTHO05D007562 7.6e-133 478.0 418 61.0
FAN05G2712 Fragaria x ananassa HOM05D006219 ORTHO05D007562 7.6e-133 478.0 449 57.0
Lalb_Chr06g0168341 Lupinus albus HOM05D006219 ORTHO05D007562 2.2e-132 476.5 408 60.0
Phvul.L001763 Phaseolus vulgaris HOM05D006219 ORTHO05D007562 2.5e-131 473.0 454 58.4
TWI36G0216 Tripterygium wilfordii HOM05D006219 ORTHO05D007562 2.7e-130 469.5 414 59.2
CsaV3_1G045560 Cucumis sativus L. HOM05D006219 ORTHO05D007562 5.1e-129 465.3 420 58.6
Lj5g0004576 Lotus japonicus HOM05D006219 ORTHO05D007562 5.1e-129 465.3 440 56.8
Sabra13G0041300 Salix brachista HOM05D006219 ORTHO05D007562 8.7e-129 464.5 408 59.8
PGR004G0430 Punica granatum HOM05D006219 ORTHO05D007562 1.5e-128 463.8 459 55.1
FAN09G4845 Fragaria x ananassa HOM05D006219 ORTHO05D007562 3.3e-128 462.6 386 62.2
MD12G1245900 Malus domestica HOM05D006219 ORTHO05D007562 5.7e-128 461.8 455 55.8
CANSAT54G2996 Cannabis sativa HOM05D006219 ORTHO05D007562 9.7e-128 461.1 451 55.9
CSS0036761 Camellia sinensis var. sinensis HOM05D006219 ORTHO05D007562 1.6e-127 460.3 392 60.5
MELO3C024664.2 Cucumis melo HOM05D006219 ORTHO05D007562 3.7e-127 459.1 426 58.2
Glyma.10G166900 Glycine max HOM05D006219 ORTHO05D007562 3.7e-127 459.1 450 58.2
ClCG06G009410 Citrullus lanatus HOM05D006219 ORTHO05D007562 4.8e-127 458.8 427 58.1
TAR633G0272 Trochodendron aralioides HOM05D006219 ORTHO05D007562 4.8e-127 458.8 418 58.4
QL03p031869 Quercus lobata HOM05D006219 ORTHO05D007562 2.4e-126 456.4 456 57.2
QL08p015782 Quercus lobata HOM05D006219 ORTHO05D007562 2.4e-126 456.4 456 57.0
Ca_10007_v3 Cicer arietinum L. HOM05D006219 ORTHO05D007562 1.7e-124 450.3 460 55.0
Sc06g0004060 Simmondsia chinensis HOM05D006219 ORTHO05D007562 1.7e-124 450.3 448 56.5
VMungo0720G3050 Vigna mungo HOM05D006219 ORTHO05D007562 1.7e-124 450.3 450 56.0
Lj2C39T18 Lonicera japonica HOM05D006219 ORTHO05D007562 5.5e-123 445.3 443 53.3
Aqoxy5G00261 Aquilegia oxysepala HOM05D006219 ORTHO05D007562 3.9e-121 439.1 429 54.3
Medtr1g079870 Medicago truncatula HOM05D006219 ORTHO05D007562 1.7e-119 433.7 390 55.9
CAN.G582.15 Capsicum annuum HOM05D006219 ORTHO05D007562 1.1e-118 431.0 452 52.9
Lsat_1_v5_gn_2_107721 Lactuca sativa HOM05D006219 ORTHO05D007562 3.1e-118 429.5 451 52.3
Actinidia06785 Actinidia chinensis HOM05D006219 ORTHO05D007562 2.6e-117 426.4 445 54.2
Dinv06988 Davidia involucrata HOM05D006219 ORTHO05D007562 2.6e-117 426.4 433 55.9
Sed0012882 Sechium edule HOM05D006219 ORTHO05D007562 2.9e-116 422.9 385 58.4
Oeu029038.1 Olea europaea HOM05D006219 ORTHO05D007562 3.2e-115 419.5 418 52.9
ECA238G2300 Erigeron canadensis HOM05D006219 ORTHO05D007562 3.6e-114 416.0 392 54.3
PSO832G3978 Papaver somniferum HOM05D006219 ORTHO05D007562 1.0e-113 414.5 389 54.2
PGSC0003DMG400028668 Solanum tuberosum HOM05D006219 ORTHO05D007562 1.0e-113 414.5 456 50.4
DCAR_030973 Daucus carota HOM05D006219 ORTHO05D007562 1.4e-113 414.1 389 55.0
HanXRQChr07g0201901 Helianthus annuus HOM05D006219 ORTHO05D007562 1.8e-113 413.7 392 53.3
PSO210G1007 Papaver somniferum HOM05D006219 ORTHO05D007562 8.8e-113 411.4 437 50.6
FAN14G5007 Fragaria x ananassa HOM05D006219 ORTHO05D007562 2.6e-112 409.8 447 52.3
Peaxi162Scf00120g00021 Petunia axillaris HOM05D006219 ORTHO05D007562 3.3e-112 409.5 459 49.5
FAN14G1966 Fragaria x ananassa HOM05D006219 ORTHO05D007562 7.4e-112 408.3 447 52.3
Sopen11g002000 Solanum pennellii HOM05D006219 ORTHO05D007562 7.4e-112 408.3 430 52.1
AUR62037607 Chenopodium quinoa HOM05D006219 ORTHO05D007562 9.7e-112 407.9 405 54.1
Solyc11g006060.2 Solanum lycopersicum HOM05D006219 ORTHO05D007562 4.8e-111 405.6 419 52.3
DCAR_002178 Daucus carota HOM05D006219 ORTHO05D007562 4.1e-110 402.5 394 55.1
HanXRQChr14g0458931 Helianthus annuus HOM05D006219 ORTHO05D007562 1.2e-109 401.0 465 48.6
Rhsim05G0175300 Rhododendron simsii HOM05D006219 ORTHO05D007562 3.5e-109 399.4 449 49.9
SalBow3G3408 Salvia bowleyana HOM05D006219 ORTHO05D007562 3.0e-105 386.3 459 47.3
Migut.F00810 Erythranthe guttata HOM05D006219 ORTHO05D007562 5.2e-105 385.6 457 47.3
CDE05G0955 Ceratophyllum demersum HOM05D006219 ORTHO05D007562 2.6e-104 383.3 391 53.5
Nitab4.5_0010345g0010 Nicotiana tabacum HOM05D006219 ORTHO05D007562 4.4e-104 382.5 455 48.1
Nitab4.5_0000856g0150 Nicotiana tabacum HOM05D006219 ORTHO05D007562 9.7e-104 381.3 458 48.3
Ah.06g191950 Amaranthus hybridus HOM05D006219 ORTHO05D007562 2.2e-103 380.2 406 51.2
Psat6g143080 Pisum sativum HOM05D006219 ORTHO05D007562 1.4e-102 377.5 342 57.6
RcHm_v2.0_Chr3g0450031 Rosa chinensis HOM05D006219 ORTHO05D007562 1.7e-100 370.5 328 59.5
unitig_748.g8683 Utricularia gibba HOM05D006219 ORTHO05D007562 1.7e-100 370.5 438 48.4
EL10Ac4g09057 Beta vulgaris HOM05D006219 ORTHO05D007562 8.5e-100 368.2 378 52.6
HPP92_025973 Vanilla planifolia HOM05D006219 ORTHO05D007562 8.3e-95 351.7 444 47.3
AUR62004874 Chenopodium quinoa HOM05D006219 ORTHO05D007562 7.0e-94 348.6 345 54.5
ATR0680G103 Amborella trichopoda HOM05D006219 ORTHO05D007562 1.1e-91 341.3 414 47.3
TPR.G10266 Trifolium pratense HOM05D006219 ORTHO05D007562 6.1e-90 335.5 416 49.3
CDE08G1514 Ceratophyllum demersum HOM05D006219 ORTHO05D007562 1.0e-89 334.7 384 49.0
Nn1g02711 Nelumbo nucifera HOM05D006219 ORTHO05D007562 8.8e-89 331.6 322 57.5
vmacro20002 Vaccinium macrocarpon HOM05D006219 ORTHO05D007562 4.9e-87 325.9 345 51.9
SGA_v2.0_scaffold210G42065 Striga asiatica HOM05D006219 ORTHO05D007562 5.5e-83 312.4 362 50.0
Os10g0445600 Oryza sativa ssp. japonica HOM05D006219 ORTHO05D007562 7.0e-78 295.4 426 42.5
Zm00001eb066000 Zea mays HOM05D006219 ORTHO05D007562 9.8e-72 275.0 398 41.2
MBI18_g37358_MAGBIO Magnolia biondii HOM05D006219 ORTHO05D007562 1.7e-71 274.2 364 47.5
Hma1.2p1_1227F.1_g268570 Hydrangea macrophylla HOM05D006219 ORTHO05D007562 3.7e-71 273.1 334 50.3
SEGI_10874 Sequoiadendron giganteum HOM05D006219 ORTHO05D007562 4.1e-70 269.6 393 41.7
Glyma.20G222200 Glycine max HOM05D006219 ORTHO05D007562 9.5e-67 258.5 253 56.9
MBI18_g32212_MAGBIO Magnolia biondii HOM05D006219 ORTHO05D007562 4.7e-66 256.1 454 41.9
Eucgr.H04253 Eucalyptus grandis HOM05D006219 ORTHO05D007562 6.4e-63 245.7 299 51.8
Ciclev10027647m.g Citrus clementina HOM05D006219 ORTHO05D007562 1.4e-62 244.6 219 58.4
MD04G1228600 Malus domestica HOM05D006219 ORTHO05D007562 3.3e-59 233.4 228 56.6
Mapoly0001s0431 Marchantia polymorpha HOM05D006219 ORTHO05D007562 2.8e-58 230.3 394 38.8
Lalb_Chr18g0044051 Lupinus albus HOM05D006219 ORTHO05D007562 2.3e-57 227.3 258 48.8
Pp3c18_4320 Physcomitrium patens HOM05D006219 ORTHO05D007562 3.7e-55 219.9 380 37.1
AagrBONN_evm.TU.Sc2ySwM_117.503 Anthoceros agrestis HOM05D006219 ORTHO05D007562 8.6e-52 208.8 405 35.3
CBR_g29314 Chara braunii HOM05D006219 ORTHO05D007562 9.9e-48 195.3 412 36.9
AagrBONN_evm.TU.Sc2ySwM_228.3126 Anthoceros agrestis HOM05D006219 ORTHO05D007562 4.5e-24 116.7 242 35.5
Cre06.g308450 Chlamydomonas reinhardtii HOM05D006219 ORTHO05D007562 1.7e-23 114.8 425 28.5
PRCOL_00003529 Prasinoderma coloniale HOM05D006219 ORTHO05D007562 2.7e-21 107.5 385 27.8
SMO137G0122 Selaginella moellendorffii HOM05D006219 ORTHO05D007562 2.7e-21 107.5 164 40.2
Pp3c16_6440 Physcomitrium patens HOM05D006219 ORTHO05D007562 1.3e-18 98.6 215 32.6
Glyma.15G246700 Glycine max HOM05D001461 ORTHO05D005534 5.0e-15 86.7 76 53.9
Mapoly4350s0001 Marchantia polymorpha HOM05D006219 ORTHO05D007562 8.4e-15 85.9 157 35.0
Cpa.g.sc162.21 Carica papaya HOM05D000369 ORTHO05D007562 3.0e-12 77.4 109 45.9
MCO04G553 Micromonas commoda HOM05D006219 ORTHO05D007562 3.3e-11 73.9 453 24.3
TAR362G0073 Trochodendron aralioides HOM05D001652 ORTHO05D001768 3.4e-08 63.9 83 45.8


User provided reference genes

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