Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung01704 Brassica carinata HOM05D004496 ORTHO05D005513 4.8e-164 581.3 325 100.0
Sp7g20330 Schrenkiella parvula HOM05D004496 ORTHO05D005513 4.3e-141 505.0 336 87.8
A03p53360 Brassica napus HOM05D004496 ORTHO05D005513 8.2e-140 500.7 328 88.4
C07p51660 Brassica napus HOM05D004496 ORTHO05D005513 7.9e-135 484.2 331 84.0
A01p13560 Brassica napus HOM05D004496 ORTHO05D005513 5.7e-133 478.0 334 84.4
BcaC09g51153 Brassica carinata HOM05D004496 ORTHO05D005513 1.3e-132 476.9 336 84.8
C01p16430 Brassica napus HOM05D004496 ORTHO05D005513 1.3e-132 476.9 336 84.8
BolC1t01593H Brassica oleracea HOM05D004496 ORTHO05D005513 1.3e-132 476.9 336 84.8
BraA01t01298Z Brassica rapa HOM05D004496 ORTHO05D005513 3.7e-132 475.3 334 83.8
BcaNung03756 Brassica carinata HOM05D004496 ORTHO05D005513 5.9e-130 468.0 332 83.1
BcaNung00807 Brassica carinata HOM05D004496 ORTHO05D005513 2.9e-129 465.7 331 81.6
Thhalv10025698m.g Eutrema salsugineum HOM05D004496 ORTHO05D005513 1.9e-128 463.0 334 81.7
Carub.0007s1912 Capsella rubella HOM05D004496 ORTHO05D005513 2.0e-125 453.0 345 78.6
AL7G31460 Arabidopsis lyrata HOM05D004496 ORTHO05D005513 3.7e-124 448.7 342 79.2
CARHR229080 Cardamine hirsuta HOM05D004496 ORTHO05D005513 2.5e-120 436.0 339 77.9
AT4G22190 Arabidopsis thaliana HOM05D004496 ORTHO05D005513 2.8e-108 396.0 340 73.2
Aa31LG6G4310 Aethionema arabicum HOM05D004496 ORTHO05D005513 9.2e-107 391.0 354 73.4
BcaNung03755 Brassica carinata HOM05D004496 ORTHO05D005513 1.7e-92 343.6 244 85.7
THA.LOC104812981 Tarenaya hassleriana HOM05D004496 ORTHO05D005513 2.3e-86 323.2 363 65.6
THA.LOC104806318 Tarenaya hassleriana HOM05D004496 ORTHO05D005513 3.5e-82 309.3 359 63.5
Thhalv10028862m.g Eutrema salsugineum HOM05D004496 ORTHO05D005513 1.1e-75 287.7 298 57.4
THA.LOC104813445 Tarenaya hassleriana HOM05D004496 ORTHO05D005513 1.2e-69 267.7 350 58.6
Sp6g04650 Schrenkiella parvula HOM05D004496 ORTHO05D005513 6.4e-68 261.9 318 57.5
Duzib192G0344 Durio zibethinus HOM05D004496 ORTHO05D005513 3.8e-60 236.1 328 55.2
Sabra11G0010200 Salix brachista HOM05D004496 ORTHO05D005513 1.4e-59 234.2 360 53.1
BraA03t14400Z Brassica rapa HOM05D004496 ORTHO05D005513 2.4e-59 233.4 148 83.8
Sabra11G0008600 Salix brachista HOM05D004496 ORTHO05D005513 4.2e-59 232.6 360 53.1
Ciclev10015792m.g Citrus clementina HOM05D004496 ORTHO05D005513 5.4e-59 232.3 366 47.3
Duzib235G0420 Durio zibethinus HOM05D004496 ORTHO05D005513 3.0e-57 226.5 338 53.6
Gohir.D05G176300 Gossypium hirsutum HOM05D004496 ORTHO05D005513 6.7e-57 225.3 348 51.1
Cpa.g.sc3209.1 Carica papaya HOM05D004496 ORTHO05D005513 1.5e-56 224.2 351 50.4
Potri.011G015500 Populus trichocarpa HOM05D004496 ORTHO05D005513 3.3e-56 223.0 370 50.5
Dinv13941 Davidia involucrata HOM05D004496 ORTHO05D005513 1.6e-55 220.7 315 53.7
Nn1g03388 Nelumbo nucifera HOM05D004496 ORTHO05D005513 2.1e-55 220.3 332 53.3
CiPaw.09G098400 Carya illinoinensis HOM05D004496 ORTHO05D005513 4.8e-55 219.2 350 51.7
Nn1g07279 Nelumbo nucifera HOM05D004496 ORTHO05D005513 4.0e-54 216.1 363 51.0
Ca_00696_v3 Cicer arietinum L. HOM05D004496 ORTHO05D005513 1.2e-53 214.5 333 52.3
MD10G1327300 Malus domestica HOM05D004496 ORTHO05D005513 2.6e-53 213.4 367 47.4
Sabra11G0011700 Salix brachista HOM05D004496 ORTHO05D005513 2.6e-53 213.4 360 51.7
Thecc.06G228600 Theobroma cacao HOM05D004496 ORTHO05D005513 2.6e-53 213.4 357 51.3
TAR624G0763 Trochodendron aralioides HOM05D001218 ORTHO05D003142 9.9e-53 211.5 318 52.2
FAN25G1366 Fragaria x ananassa HOM05D004496 ORTHO05D005513 1.3e-52 211.1 330 50.3
Dinv20109 Davidia involucrata HOM05D004496 ORTHO05D005950 4.9e-52 209.1 292 51.0
CiPaw.10G074800 Carya illinoinensis HOM05D004496 ORTHO05D005513 6.4e-52 208.8 335 52.5
Psat1g175480 Pisum sativum HOM05D004496 ORTHO05D005513 6.4e-52 208.8 324 52.2
MSTRG.7183 Avicennia marina HOM05D004496 ORTHO05D005513 1.4e-51 207.6 350 46.0
TWI38G0464 Tripterygium wilfordii HOM05D004496 ORTHO05D005513 2.4e-51 206.8 347 47.8
Gohir.A05G173300 Gossypium hirsutum HOM05D004496 ORTHO05D005513 3.2e-51 206.5 348 49.1
Nitab4.5_0006125g0010 Nicotiana tabacum HOM05D004496 ORTHO05D005513 3.2e-51 206.5 371 43.1
Lalb_Chr15g0087811 Lupinus albus HOM05D004496 ORTHO05D005513 7.1e-51 205.3 313 52.4
ClCG01G021640 Citrullus lanatus HOM05D004496 ORTHO05D005513 9.3e-51 204.9 353 51.0
Glyma.15G112200 Glycine max HOM05D004496 ORTHO05D005513 1.2e-50 204.5 287 55.1
PGR042G2934 Punica granatum HOM05D004496 ORTHO05D005513 1.2e-50 204.5 380 48.2
MSTRG.13128 Avicennia marina HOM05D004496 ORTHO05D005513 1.6e-50 204.1 352 42.3
Lj6g0013804 Lotus japonicus HOM05D004496 ORTHO05D005513 1.6e-50 204.1 301 54.2
Glyma.09G007852 Glycine max HOM05D004496 ORTHO05D005513 4.6e-50 202.6 339 51.3
FvH4_3g01370 Fragaria vesca HOM05D004496 ORTHO05D005513 6.0e-50 202.2 331 49.8
CAN.G1014.49 Capsicum annuum HOM05D004496 ORTHO05D005513 1.8e-49 200.7 342 45.3
Phvul.006G145400 Phaseolus vulgaris HOM05D004496 ORTHO05D005513 5.1e-49 199.1 299 50.5
Rhsim13G0149900 Rhododendron simsii HOM05D004496 ORTHO05D005513 1.1e-48 198.0 336 46.4
PGSC0003DMG400016725 Solanum tuberosum HOM05D004496 ORTHO05D005513 2.5e-48 196.8 359 44.8
Manes.16G002700 Manihot esculenta HOM05D004496 ORTHO05D005513 3.3e-48 196.4 328 52.1
Nitab4.5_0009517g0010 Nicotiana tabacum HOM05D004496 ORTHO05D005513 3.3e-48 196.4 370 41.9
TAR627G0164 Trochodendron aralioides HOM05D004496 ORTHO05D005513 4.3e-48 196.1 329 48.6
CANSAT56G2524 Cannabis sativa HOM05D004496 ORTHO05D005513 5.6e-48 195.7 356 48.6
Lj2P264T22 Lonicera japonica HOM05D004496 ORTHO05D005513 5.6e-48 195.7 334 44.6
TWI38G0680 Tripterygium wilfordii HOM05D004496 ORTHO05D005513 9.6e-48 194.9 367 47.4
Prupe.4G014700 Prunus persica HOM05D004496 ORTHO05D005513 2.1e-47 193.7 346 43.1
Medtr2g024980 Medicago truncatula HOM05D004496 ORTHO05D005513 2.8e-47 193.4 353 48.4
vmacro03662 Vaccinium macrocarpon HOM05D004496 ORTHO05D005513 2.8e-47 193.4 357 44.3
Migut.M01368 Erythranthe guttata HOM05D004496 ORTHO05D005513 8.1e-47 191.8 339 44.5
TAR627G0966 Trochodendron aralioides HOM05D004496 ORTHO05D005513 1.1e-46 191.4 327 48.0
Aa31LG9G9910 Aethionema arabicum HOM05D004496 ORTHO05D005950 1.2e-45 188.0 238 51.3
Haze_06861 Corylus avellana HOM05D004496 ORTHO05D005513 1.2e-45 188.0 355 48.5
SalBow8G1688 Salvia bowleyana HOM05D004496 ORTHO05D005513 1.5e-45 187.6 326 42.3
Hma1.2p1_0298F.1_g117440 Hydrangea macrophylla HOM05D004496 ORTHO05D005513 2.6e-45 186.8 355 47.3
TWI63G1509 Tripterygium wilfordii HOM05D004496 ORTHO05D005513 2.6e-45 186.8 362 47.0
arahy.Tifrunner.gnm1.ann1.SI7QTZ Arachis hypogaea HOM05D004496 ORTHO05D005513 3.4e-45 186.4 333 49.5
Actinidia26886 Actinidia chinensis HOM05D004496 ORTHO05D005513 4.5e-45 186.0 306 52.3
Cfa000158 Carpinus fangiana HOM05D004496 ORTHO05D005513 4.5e-45 186.0 359 48.2
Sopen02g025790 Solanum pennellii HOM05D004496 ORTHO05D005513 7.6e-45 185.3 354 42.9
Atru.chr10.2286 Acer truncatum HOM05D004496 ORTHO05D005513 1.0e-44 184.9 331 49.5
Solyc02g081150.1 Solanum lycopersicum HOM05D004496 ORTHO05D005513 1.0e-44 184.9 354 43.5
RcHm_v2.0_Chr5g0001991 Rosa chinensis HOM05D004496 ORTHO05D005513 1.7e-44 184.1 336 47.3
Migut.H01591 Erythranthe guttata HOM05D004496 ORTHO05D005513 3.8e-44 183.0 335 45.1
Potri.004G003900 Populus trichocarpa HOM05D004496 ORTHO05D005513 3.8e-44 183.0 378 42.9
arahy.Tifrunner.gnm1.ann1.EH65IB Arachis hypogaea HOM05D004496 ORTHO05D005513 4.9e-44 182.6 332 49.4
GSVIVG01004818001 Vitis vinifera HOM05D004496 ORTHO05D005513 8.4e-44 181.8 236 50.8
Sed0021394 Sechium edule HOM05D004496 ORTHO05D005513 1.1e-43 181.4 301 44.2
MD05G1352700 Malus domestica HOM05D004496 ORTHO05D005513 1.4e-43 181.0 354 48.0
Lalb_Chr18g0056781 Lupinus albus HOM05D004496 ORTHO05D005513 2.5e-43 180.3 316 50.9
Lsat_1_v5_gn_7_14880 Lactuca sativa HOM05D004496 ORTHO05D005513 3.2e-43 179.9 321 47.0
MELO3C007420.2 Cucumis melo HOM05D004496 ORTHO05D005513 4.2e-43 179.5 326 45.7
CSS0046352 Camellia sinensis var. sinensis HOM05D004496 ORTHO05D005513 5.5e-43 179.1 312 45.8
TAR626G0621 Trochodendron aralioides HOM05D004496 ORTHO05D005513 5.5e-43 179.1 329 49.5
Phvul.003G081900 Phaseolus vulgaris HOM05D004496 ORTHO05D005513 7.1e-43 178.7 326 42.3
EL10Ac8g20132 Beta vulgaris HOM05D004496 ORTHO05D005513 2.7e-42 176.8 307 47.6
Nitab4.5_0000005g0040 Nicotiana tabacum HOM05D004496 ORTHO05D005513 7.9e-42 175.3 330 42.7
Peaxi162Scf00708g00013 Petunia axillaris HOM05D004496 ORTHO05D005513 3.0e-41 173.3 312 47.4
Nitab4.5_0005882g0010 Nicotiana tabacum HOM05D004496 ORTHO05D005513 1.5e-40 171.0 339 41.6
Aqoxy1G03511 Aquilegia oxysepala HOM05D004496 ORTHO05D005513 1.9e-40 170.6 356 43.0
Gohir.D06G157600 Gossypium hirsutum HOM05D004496 ORTHO05D005513 2.5e-40 170.2 293 51.5
CDE04G1983 Ceratophyllum demersum HOM05D004496 ORTHO05D005513 3.3e-40 169.9 302 40.7
Gorai.010G184200 Gossypium raimondii HOM05D004496 ORTHO05D005513 3.3e-40 169.9 293 51.5
Gorai.009G181700 Gossypium raimondii HOM05D004496 ORTHO05D005513 4.3e-40 169.5 273 51.6
Potri.006G282500 Populus trichocarpa HOM05D004496 ORTHO05D005513 4.3e-40 169.5 356 46.1
VMungo1215G0904 Vigna mungo HOM05D004496 ORTHO05D005513 9.6e-40 168.3 320 40.3
CsaV3_6G048690 Cucumis sativus L. HOM05D004496 ORTHO05D005513 1.3e-39 167.9 334 44.9
Lsat_1_v5_gn_4_61701 Lactuca sativa HOM05D004496 ORTHO05D005513 2.1e-39 167.2 343 47.2
Actinidia02342 Actinidia chinensis HOM05D004496 ORTHO05D005513 3.7e-39 166.4 312 50.0
Sabra04G0002100 Salix brachista HOM05D004496 ORTHO05D005513 1.1e-38 164.9 336 41.1
Potri.006G270100 Populus trichocarpa HOM05D004496 ORTHO05D005513 1.4e-38 164.5 309 46.9
Manes.17G027100 Manihot esculenta HOM05D004496 ORTHO05D005513 3.1e-38 163.3 311 45.3
Potri.006G282000 Populus trichocarpa HOM05D004496 ORTHO05D005513 1.2e-37 161.4 374 44.7
HanXRQChr15g0470781 Helianthus annuus HOM05D004496 ORTHO05D005513 3.4e-37 159.8 308 48.4
Sc17g0007590 Simmondsia chinensis HOM05D004496 ORTHO05D005513 3.4e-37 159.8 320 45.9
Ah.09g234500 Amaranthus hybridus HOM05D004496 ORTHO05D005950 7.6e-37 158.7 281 49.5
QL05p071740 Quercus lobata HOM05D004496 ORTHO05D005513 7.6e-37 158.7 353 45.6
PSO210G3984 Papaver somniferum HOM05D004496 ORTHO05D005513 1.1e-35 154.8 390 41.0
Oeu007154.1 Olea europaea HOM05D004496 ORTHO05D005513 1.9e-35 154.1 300 47.7
MBI19_g19808_MAGBIO Magnolia biondii HOM05D004496 ORTHO05D005513 3.2e-35 153.3 339 43.1
Gohir.A06G151400 Gossypium hirsutum HOM05D004496 ORTHO05D005513 5.5e-35 152.5 244 56.6
Sed0016463 Sechium edule HOM05D004496 ORTHO05D005513 2.1e-34 150.6 263 50.2
HPP92_023384 Vanilla planifolia HOM05D004496 ORTHO05D005513 2.3e-33 147.1 330 39.1
COL.COLO4_31834 Corchorus olitorius HOM05D004496 ORTHO05D005513 5.1e-33 146.0 162 54.9
PGR004G2243 Punica granatum HOM05D004496 ORTHO05D005513 8.7e-33 145.2 326 41.1
ECA236G1118 Erigeron canadensis HOM05D004496 ORTHO05D005513 5.7e-32 142.5 312 40.7
PSO832G0430 Papaver somniferum HOM05D004496 ORTHO05D005513 5.7e-32 142.5 402 37.1
Glyma.07G263700 Glycine max HOM05D004496 ORTHO05D005513 9.7e-32 141.7 295 37.3
Peaxi162Scf00294g00097 Petunia axillaris HOM05D004496 ORTHO05D005513 1.6e-31 141.0 271 40.6
ATR0059G030 Amborella trichopoda HOM05D004496 ORTHO05D005513 8.2e-31 138.7 364 40.4
CDE07G1551 Ceratophyllum demersum HOM05D004496 ORTHO05D005513 2.6e-29 133.7 257 38.1
Psat4g004280 Pisum sativum HOM05D004496 ORTHO05D005513 1.0e-28 131.7 168 47.0
Lj4g0028181 Lotus japonicus HOM05D004496 ORTHO05D005513 1.4e-27 127.9 315 39.7
SGA_v2.0_scaffold89G27486 Striga asiatica HOM05D004496 ORTHO05D005513 7.9e-26 122.1 369 40.4
Eucgr.D01366 Eucalyptus grandis HOM05D004496 ORTHO05D005513 1.0e-25 121.7 167 47.9
Lj1P1236T60 Lonicera japonica HOM05D004496 ORTHO05D005513 6.7e-25 119.0 157 46.5
unitig_749.g13622 Utricularia gibba HOM05D004496 ORTHO05D005513 8.8e-25 118.6 263 38.4
unitig_26.g9398 Utricularia gibba HOM05D004496 ORTHO05D005513 2.0e-24 117.5 302 35.1
DCAR_002205 Daucus carota HOM05D004496 ORTHO05D005513 2.6e-24 117.1 344 33.1
Potri.006G283300 Populus trichocarpa HOM05D004496 ORTHO05D005513 2.6e-24 117.1 292 46.2
Nn1g01506 Nelumbo nucifera HOM05D004496 ORTHO05D005513 7.4e-24 115.5 133 51.1
Medtr4g132690 Medicago truncatula HOM05D004496 ORTHO05D005513 3.7e-23 113.2 295 38.3
Oeu003154.1 Olea europaea HOM05D004496 ORTHO05D005513 4.8e-23 112.8 296 36.1
Zm00001eb112850 Zea mays HOM05D004496 ORTHO05D005513 3.8e-20 103.2 339 36.0
TPR.G37047 Trifolium pratense HOM05D004496 ORTHO05D005513 5.0e-20 102.8 210 43.8
Zm00001eb169380 Zea mays HOM05D004496 ORTHO05D005513 5.0e-20 102.8 348 39.9
Nn2g15240 Nelumbo nucifera HOM05D004496 ORTHO05D005513 1.2e-18 98.2 263 44.1
Ca_21060_v3 Cicer arietinum L. HOM05D004496 ORTHO05D005513 3.9e-17 93.2 211 37.0
Nn1g06547 Nelumbo nucifera HOM05D004496 ORTHO05D005513 2.0e-16 90.9 108 50.9
HPP92_008063 Vanilla planifolia HOM05D004496 ORTHO05D005513 4.8e-15 86.3 166 41.0
SGA_v2.0_scaffold4G01894 Striga asiatica HOM05D004496 ORTHO05D005513 8.2e-15 85.5 348 33.6
Nn3g21624 Nelumbo nucifera HOM05D004496 ORTHO05D005513 1.4e-14 84.7 265 45.3
Os11g0497350 Oryza sativa ssp. japonica HOM05D004496 ORTHO05D005513 5.2e-09 66.2 329 34.7
unitig_748.g7579 Utricularia gibba HOM05D004496 ORTHO05D005513 4.1e-06 56.6 160 32.5


User provided reference genes

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