Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung01659 Brassica carinata HOM05D005273 ORTHO05D006195 1.3e-274 949.1 472 100.0
A03p53890 Brassica napus HOM05D005273 ORTHO05D006195 1.4e-212 743.0 390 94.9
C07p52300 Brassica napus HOM05D005273 ORTHO05D006195 6.8e-212 740.7 399 93.7
BolC7t45723H Brassica oleracea HOM05D005273 ORTHO05D006195 9.2e-209 730.3 383 95.8
BraA03t14458Z Brassica rapa HOM05D005273 ORTHO05D006195 1.0e-207 726.9 385 94.8
Carub.0007s1834 Capsella rubella HOM05D005273 ORTHO05D006195 6.9e-204 714.1 380 92.9
A01p14180 Brassica napus HOM05D005273 ORTHO05D006195 7.6e-203 710.7 383 92.4
Carub.0001s3611 Capsella rubella HOM05D005273 ORTHO05D006195 2.2e-202 709.1 378 92.3
AL7G30590 Arabidopsis lyrata HOM05D005273 ORTHO05D006195 5.4e-201 704.5 378 91.8
BraA01t01367Z Brassica rapa HOM05D005273 ORTHO05D006195 8.7e-199 697.2 370 93.0
AT4G22930 Arabidopsis thaliana HOM05D005273 ORTHO05D006195 1.1e-198 696.8 378 91.8
Aa31LG2G13370 Aethionema arabicum HOM05D005273 ORTHO05D006195 8.1e-197 690.6 378 89.9
CARHR229970 Cardamine hirsuta HOM05D005273 ORTHO05D006195 1.4e-196 689.9 379 91.0
Sp7g21020 Schrenkiella parvula HOM05D005273 ORTHO05D006195 2.1e-189 666.0 342 95.3
Thhalv10025474m.g Eutrema salsugineum HOM05D005273 ORTHO05D006195 1.4e-188 663.3 342 94.7
BcaC09g51057 Brassica carinata HOM05D000022 ORTHO05D006195 5.6e-182 641.3 396 83.1
THA.LOC104823543 Tarenaya hassleriana HOM05D005273 ORTHO05D006195 1.4e-180 636.7 371 85.2
C01p17440 Brassica napus HOM05D000022 ORTHO05D006195 2.0e-179 632.9 376 86.4
THA.LOC104814179 Tarenaya hassleriana HOM05D005273 ORTHO05D006195 7.1e-177 624.4 346 86.7
Prupe.3G131200 Prunus persica HOM05D005273 ORTHO05D006195 1.6e-176 623.2 379 79.7
Sabra07G0113000 Salix brachista HOM05D005273 ORTHO05D006195 5.1e-175 618.2 383 79.4
QL08p039365 Quercus lobata HOM05D005273 ORTHO05D006195 1.5e-174 616.7 379 78.1
Duzib264G0403 Durio zibethinus HOM05D005273 ORTHO05D006195 4.3e-174 615.1 367 82.6
Ciclev10015816m.g Citrus clementina HOM05D005273 ORTHO05D006195 5.7e-174 614.8 343 84.8
FvH4_6g26410 Fragaria vesca HOM05D005273 ORTHO05D006195 7.4e-174 614.4 379 79.4
Atru.chr6.2972 Acer truncatum HOM05D005273 ORTHO05D006195 1.6e-173 613.2 379 78.6
Gohir.A11G060000 Gossypium hirsutum HOM05D005273 ORTHO05D006195 2.8e-173 612.5 378 79.4
Gorai.007G069300 Gossypium raimondii HOM05D005273 ORTHO05D006195 2.8e-173 612.5 378 79.1
Sed0018091 Sechium edule HOM05D005273 ORTHO05D006195 3.7e-173 612.1 378 78.6
CANSAT64G2205 Cannabis sativa HOM05D005273 ORTHO05D006195 1.4e-172 610.1 379 78.4
Duzib147G0196 Durio zibethinus HOM05D005273 ORTHO05D006195 1.8e-172 609.8 370 81.1
Hma1.2p1_0002F.1_g002020 Hydrangea macrophylla HOM05D005273 ORTHO05D006195 4.1e-172 608.6 354 82.5
MD09G1233100 Malus domestica HOM05D005273 ORTHO05D006195 4.1e-172 608.6 379 77.8
Potri.007G139700 Populus trichocarpa HOM05D005273 ORTHO05D006195 5.3e-172 608.2 344 84.3
Eucgr.K01040 Eucalyptus grandis HOM05D005273 ORTHO05D006195 6.9e-172 607.8 378 78.0
Gohir.D11G064100 Gossypium hirsutum HOM05D005273 ORTHO05D006195 6.9e-172 607.8 342 83.9
Nn1g06518 Nelumbo nucifera HOM05D005273 ORTHO05D006195 6.9e-172 607.8 379 77.3
arahy.Tifrunner.gnm1.ann1.891C6J Arachis hypogaea HOM05D005273 ORTHO05D006195 1.5e-171 606.7 417 71.2
FAN05G3218 Fragaria x ananassa HOM05D005273 ORTHO05D006195 1.5e-171 606.7 342 85.1
COL.COLO4_33584 Corchorus olitorius HOM05D005273 ORTHO05D006195 2.0e-171 606.3 360 81.1
Sabra07G0117800 Salix brachista HOM05D005273 ORTHO05D006195 2.6e-171 605.9 400 75.8
GSVIVG01020564001 Vitis vinifera HOM05D005273 ORTHO05D006195 2.6e-171 605.9 344 83.7
Manes.02G045100 Manihot esculenta HOM05D005273 ORTHO05D006195 7.6e-171 604.4 343 83.7
CsaV3_3G041260 Cucumis sativus L. HOM05D005273 ORTHO05D006195 1.3e-170 603.6 378 77.8
PGR142G4354 Punica granatum HOM05D005273 ORTHO05D006195 1.3e-170 603.6 342 83.0
RcHm_v2.0_Chr2g0127911 Rosa chinensis HOM05D005273 ORTHO05D006195 1.3e-170 603.6 382 77.7
VMungo1127G0137 Vigna mungo HOM05D005273 ORTHO05D006195 2.2e-170 602.8 384 76.0
ClCG10G015250 Citrullus lanatus HOM05D005273 ORTHO05D006195 2.9e-170 602.4 378 77.5
arahy.Tifrunner.gnm1.ann1.EEV1KR Arachis hypogaea HOM05D005273 ORTHO05D006195 3.8e-170 602.1 381 75.9
TWI59G0041 Tripterygium wilfordii HOM05D005273 ORTHO05D006195 6.5e-170 601.3 353 81.6
Nn1g04120 Nelumbo nucifera HOM05D005273 ORTHO05D006195 8.5e-170 600.9 342 82.7
arahy.Tifrunner.gnm1.ann1.RDE8QD Arachis hypogaea HOM05D005273 ORTHO05D006195 1.9e-169 599.7 372 76.6
MELO3C009854.2 Cucumis melo HOM05D005273 ORTHO05D006195 3.6e-168 595.5 387 75.7
CANSAT64G2383 Cannabis sativa HOM05D005273 ORTHO05D006195 6.1e-168 594.7 346 80.3
CSS0011944 Camellia sinensis var. sinensis HOM05D005273 ORTHO05D006195 1.4e-167 593.6 382 76.7
CSS0048709 Camellia sinensis var. sinensis HOM05D005273 ORTHO05D006195 1.4e-167 593.6 382 76.7
Glyma.12G114500 Glycine max HOM05D005273 ORTHO05D006195 1.4e-167 593.6 358 78.8
Solyc02g072105.1 Solanum lycopersicum HOM05D005273 ORTHO05D006195 1.8e-167 593.2 396 73.0
Migut.D02068 Erythranthe guttata HOM05D005273 ORTHO05D006195 3.0e-167 592.4 387 74.2
Phvul.011G119600 Phaseolus vulgaris HOM05D005273 ORTHO05D006195 1.1e-166 590.5 341 81.2
arahy.Tifrunner.gnm1.ann1.YR7R6W Arachis hypogaea HOM05D005273 ORTHO05D006195 2.5e-166 589.3 340 80.9
CDE08G0645 Ceratophyllum demersum HOM05D005273 ORTHO05D006195 2.5e-166 589.3 380 73.7
Sc21g0002980 Simmondsia chinensis HOM05D005273 ORTHO05D006195 5.7e-166 588.2 352 77.8
Ca_18943_v3 Cicer arietinum L. HOM05D005273 ORTHO05D006195 1.3e-165 587.0 341 80.6
Os01g0747500 Oryza sativa ssp. japonica HOM05D005273 ORTHO05D006195 2.8e-165 585.9 352 78.1
PGSC0003DMG400028417 Solanum tuberosum HOM05D005273 ORTHO05D006195 3.7e-165 585.5 343 79.6
MSTRG.21306 Avicennia marina HOM05D005273 ORTHO05D006195 6.3e-165 584.7 353 77.9
Haze_12807 Corylus avellana HOM05D005273 ORTHO05D006195 6.3e-165 584.7 359 79.4
PSO782G4868 Papaver somniferum HOM05D005273 ORTHO05D006195 1.1e-164 583.9 378 74.9
ATR0737G119 Amborella trichopoda HOM05D005273 ORTHO05D006195 1.4e-164 583.6 343 79.9
Sopen02g021070 Solanum pennellii HOM05D005273 ORTHO05D006195 1.4e-164 583.6 343 79.9
Glyma.06G291600 Glycine max HOM05D005273 ORTHO05D006195 1.8e-164 583.2 341 80.1
Medtr4g078370 Medicago truncatula HOM05D005273 ORTHO05D006195 3.1e-164 582.4 341 79.5
Phvul.010G107600 Phaseolus vulgaris HOM05D005273 ORTHO05D006195 4.1e-164 582.0 341 80.6
Lalb_Chr03g0027211 Lupinus albus HOM05D005273 ORTHO05D006195 5.3e-164 581.6 343 79.3
SalBow1G7481 Salvia bowleyana HOM05D005273 ORTHO05D006195 5.3e-164 581.6 353 79.6
AUR62012902 Chenopodium quinoa HOM05D005273 ORTHO05D006195 6.9e-164 581.3 344 79.7
Psat7g169200 Pisum sativum HOM05D005273 ORTHO05D006195 9.1e-164 580.9 341 79.5
CAN.G411.45 Capsicum annuum HOM05D005273 ORTHO05D006195 1.5e-163 580.1 374 74.1
PSO478G2492 Papaver somniferum HOM05D005273 ORTHO05D006195 3.4e-163 578.9 375 74.4
Cc06_g20460 Coffea canephora HOM05D005273 ORTHO05D006195 4.5e-163 578.6 377 73.7
Lsat_1_v5_gn_4_66761 Lactuca sativa HOM05D005273 ORTHO05D006195 4.5e-163 578.6 343 78.4
SalBow1G1167 Salvia bowleyana HOM05D005273 ORTHO05D006195 5.9e-163 578.2 342 80.4
Ah.11g045620 Amaranthus hybridus HOM05D005273 ORTHO05D006195 7.7e-163 577.8 343 79.6
Aqoxy6G00048 Aquilegia oxysepala HOM05D005273 ORTHO05D006195 1.0e-162 577.4 348 78.2
Hund09652 Selenicereus undatus HOM05D005273 ORTHO05D006195 1.0e-162 577.4 348 78.4
DCAR_013064 Daucus carota HOM05D005273 ORTHO05D006195 5.0e-162 575.1 344 76.7
Lj3g0011026 Lotus japonicus HOM05D005273 ORTHO05D006195 1.1e-161 573.9 341 79.5
HanXRQChr15g0466031 Helianthus annuus HOM05D005273 ORTHO05D006195 4.2e-161 572.0 353 75.9
AUR62011776 Chenopodium quinoa HOM05D005273 ORTHO05D006195 2.1e-160 569.7 404 69.8
ECA246G2010 Erigeron canadensis HOM05D005273 ORTHO05D006195 2.7e-160 569.3 343 79.3
TWI18G0085 Tripterygium wilfordii HOM05D005273 ORTHO05D006195 1.4e-159 567.0 341 80.4
EL10Ac3g07435 Beta vulgaris HOM05D005273 ORTHO05D006195 1.8e-159 566.6 357 77.6
SGA_v2.0_scaffold25G10971 Striga asiatica HOM05D005273 ORTHO05D006195 2.3e-159 566.2 392 73.0
Zm00001eb153030 Zea mays HOM05D005273 ORTHO05D006195 8.8e-159 564.3 346 76.6
TAR627G0042 Trochodendron aralioides HOM05D005273 ORTHO05D006195 7.4e-158 561.2 397 70.5
HPP92_004898 Vanilla planifolia HOM05D005273 ORTHO05D006195 7.4e-158 561.2 344 75.9
CiPaw.04G127500 Carya illinoinensis HOM05D005273 ORTHO05D006195 4.1e-156 555.4 353 76.8
unitig_899.g15313 Utricularia gibba HOM05D005273 ORTHO05D006195 1.2e-155 553.9 343 76.7
vmacro12316 Vaccinium macrocarpon HOM05D005273 ORTHO05D006195 4.7e-152 542.0 442 62.9
SHI10390 Sapria himalayana HOM05D005273 ORTHO05D006195 3.1e-148 529.3 349 71.6
Rhsim06G0140600 Rhododendron simsii HOM05D005273 ORTHO05D006195 2.0e-147 526.6 456 59.4
Mapoly0001s0029 Marchantia polymorpha HOM05D005273 ORTHO05D006195 2.9e-146 522.7 347 70.0
SMO347G0496 Selaginella moellendorffii HOM05D005273 ORTHO05D006195 1.2e-144 517.3 344 71.8
Lj5g0005541 Lotus japonicus HOM05D005273 ORTHO05D006195 3.6e-144 515.8 305 80.0
Cpa.g.sc83.46 Carica papaya HOM05D005273 ORTHO05D006195 1.0e-143 514.2 355 72.4
Pp3c13_8930 Physcomitrium patens HOM05D005273 ORTHO05D006195 8.8e-143 511.1 342 71.9
Dinv04937 Davidia involucrata HOM05D005273 ORTHO05D006195 7.0e-140 501.5 357 69.7
Thecc.01G150900 Theobroma cacao HOM05D005273 ORTHO05D006195 4.8e-133 478.8 271 85.2
CBR_g21229 Chara braunii HOM05D005273 ORTHO05D006195 1.0e-130 471.1 345 64.9
BolC1t01684H Brassica oleracea HOM05D005273 ORTHO05D006195 2.6e-126 456.4 236 94.1
MBI07_g30188_MAGBIO Magnolia biondii HOM05D005273 ORTHO05D006195 3.7e-125 452.6 381 61.7
AUR62011723 Chenopodium quinoa HOM05D005273 ORTHO05D006195 2.0e-123 446.8 259 81.5
AUR62024621 Chenopodium quinoa HOM05D005273 ORTHO05D006195 3.8e-122 442.6 255 81.6
Cre11.g467550 Chlamydomonas reinhardtii HOM05D005273 ORTHO05D006195 9.5e-121 438.0 345 61.7
Cfa014627 Carpinus fangiana HOM05D005273 ORTHO05D006195 2.5e-113 413.3 395 57.7
Nitab4.5_0000437g0040 Nicotiana tabacum HOM05D005273 ORTHO05D006195 3.3e-113 412.9 312 65.7
Nitab4.5_0006070g0020 Nicotiana tabacum HOM05D005273 ORTHO05D006195 3.3e-113 412.9 312 66.0
Thecc.K0007100 Theobroma cacao HOM05D005273 ORTHO05D006195 2.0e-110 403.7 227 85.0
MCO16G183 Micromonas commoda HOM05D005273 ORTHO05D006195 1.0e-106 391.3 342 55.0
AagrBONN_evm.TU.Sc2ySwM_117.50 Anthoceros agrestis HOM05D005273 ORTHO05D006195 2.3e-103 380.2 249 71.9
CSS0013056 Camellia sinensis var. sinensis HOM05D005273 ORTHO05D006195 8.9e-103 378.3 317 61.8
Haze_27262 Corylus avellana HOM05D005273 ORTHO05D006195 6.0e-99 365.5 341 53.4
CSS0022573 Camellia sinensis var. sinensis HOM05D005273 ORTHO05D006195 4.3e-97 359.4 356 55.3
PRCOL_00003989 Prasinoderma coloniale HOM05D005273 ORTHO05D006195 9.5e-97 358.2 347 53.0
QL08p039454 Quercus lobata HOM05D005273 ORTHO05D006195 8.4e-93 345.1 253 68.4
FAN02G4311 Fragaria x ananassa HOM05D005273 ORTHO05D006195 5.1e-90 335.9 224 75.4
Lj1C718T2 Lonicera japonica HOM05D005273 ORTHO05D006195 1.7e-85 320.9 192 78.6
Atru.chr6.2977 Acer truncatum HOM05D005273 ORTHO05D006195 5.4e-76 289.3 219 67.6
Actinidia11084 Actinidia chinensis HOM05D005273 ORTHO05D006195 4.6e-75 286.2 174 77.6
SEGI_10566 Sequoiadendron giganteum HOM05D005273 ORTHO05D006195 6.5e-61 239.2 166 68.7
Peaxi162Scf00112g00113 Petunia axillaris HOM05D005273 ORTHO05D006195 1.5e-57 228.0 175 67.4
Lj1A718G26 Lonicera japonica HOM05D005273 ORTHO05D006195 2.4e-47 194.1 116 77.6
Peaxi162Scf00112g00110 Petunia axillaris HOM05D005273 ORTHO05D006195 9.1e-47 192.2 115 75.7
Oeu007130.1 Olea europaea HOM05D005273 ORTHO05D006195 2.0e-46 191.0 346 36.7
TPR.G7356 Trifolium pratense HOM05D005273 ORTHO05D006195 1.8e-42 177.9 94 87.2
EL10Ac9g21222 Beta vulgaris HOM05D005273 ORTHO05D006195 2.4e-39 167.5 248 43.5
Atru.chr6.2976 Acer truncatum HOM05D005273 ORTHO05D006195 2.0e-38 164.5 98 78.6
Cfa022577 Carpinus fangiana HOM05D005273 ORTHO05D006195 5.2e-34 149.8 327 33.6
BcaNung01011 Brassica carinata HOM05D005273 ORTHO05D006195 5.0e-29 133.3 255 39.2
Lj3g0005703 Lotus japonicus HOM05D002777 ORTHO05D001516 2.0e-25 121.3 81 75.3
AUR62036776 Chenopodium quinoa HOM05D005273 ORTHO05D006195 5.9e-22 109.8 171 41.5
AUR62041872 Chenopodium quinoa HOM05D005273 ORTHO05D006195 3.2e-20 104.0 95 55.8
Lalb_Chr09g0333161 Lupinus albus HOM05D005273 ORTHO05D006195 1.4e-18 98.6 87 55.2
TPR.G31736 Trifolium pratense HOM05D005273 ORTHO05D006195 6.6e-13 79.7 45 82.2
BcaNung01675 Brassica carinata HOM05D000022 ORTHO05D000071 5.5e-12 76.6 50 74.0
Thhalv10024606m.g Eutrema salsugineum HOM05D000022 ORTHO05D000071 4.4e-09 67.0 50 68.0
Sp7g21250 Schrenkiella parvula HOM05D000022 ORTHO05D000071 9.8e-09 65.9 50 68.0
Lj5A796T26 Lonicera japonica HOM05D005273 ORTHO05D006195 1.7e-08 65.1 42 66.7
CARHR230300 Cardamine hirsuta HOM05D000022 ORTHO05D000071 2.8e-08 64.3 50 64.0
BolC1t01683H Brassica oleracea HOM05D000022 ORTHO05D000071 8.3e-08 62.8 51 64.7
CARHR230310 Cardamine hirsuta HOM05D000022 ORTHO05D000071 1.4e-07 62.0 85 42.4
AT4G23190 Arabidopsis thaliana HOM05D000022 ORTHO05D000071 5.4e-07 60.1 51 62.7
BcaNung01012 Brassica carinata HOM05D000022 ORTHO05D000071 9.2e-07 59.3 50 62.0
BcaNung01013 Brassica carinata HOM05D000022 ORTHO05D000071 9.2e-07 59.3 51 64.7
C06p12570 Brassica napus HOM05D000022 ORTHO05D000071 4.5e-06 57.0 53 60.4
AT4G23300 Arabidopsis thaliana HOM05D000022 ORTHO05D000071 5.9e-06 56.6 51 58.8
CARHR230330 Cardamine hirsuta HOM05D000022 ORTHO05D000071 5.9e-06 56.6 51 60.8
Sp7g21010 Schrenkiella parvula HOM05D000022 ORTHO05D000071 5.9e-06 56.6 37 81.1
AL7G30280 Arabidopsis lyrata HOM05D000022 ORTHO05D000071 7.8e-06 56.2 50 60.0
BraA01t01364Z Brassica rapa HOM05D000022 ORTHO05D000071 7.8e-06 56.2 51 58.8


User provided reference genes

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