Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung01651 Brassica carinata HOM05D005039 ORTHO05D006145 1.8e-257 892.1 469 100.0
C01p23870 Brassica napus HOM05D005039 ORTHO05D006145 2.5e-254 881.7 469 98.3
A01p18920 Brassica napus HOM05D005039 ORTHO05D006145 7.2e-254 880.2 469 98.1
BcaC09g50566 Brassica carinata HOM05D005039 ORTHO05D006145 1.2e-253 879.4 469 98.1
BolC1t02332H Brassica oleracea HOM05D005039 ORTHO05D006145 1.2e-253 879.4 469 98.1
Thhalv10025115m.g Eutrema salsugineum HOM05D005039 ORTHO05D006145 4.4e-251 870.9 469 97.2
Sp7g25580 Schrenkiella parvula HOM05D005039 ORTHO05D006145 3.1e-249 864.8 469 96.4
BraA01t01833Z Brassica rapa HOM05D005039 ORTHO05D006145 1.5e-248 862.4 497 92.4
Carub.0007s1322 Capsella rubella HOM05D005039 ORTHO05D006145 1.5e-248 862.4 469 96.6
CARHR235330 Cardamine hirsuta HOM05D005039 ORTHO05D006145 1.3e-247 859.4 469 95.5
AT4G27630 Arabidopsis thaliana HOM05D005039 ORTHO05D006145 1.7e-247 859.0 469 96.2
Aa31LG2G2190 Aethionema arabicum HOM05D005039 ORTHO05D006145 4.0e-236 821.2 469 91.7
THA.LOC104805716 Tarenaya hassleriana HOM05D005039 ORTHO05D006145 1.5e-235 819.3 469 91.0
CARHR056390 Cardamine hirsuta HOM05D005039 ORTHO05D006145 4.4e-235 817.8 469 90.6
Sp5g19320 Schrenkiella parvula HOM05D005039 ORTHO05D006145 6.3e-234 813.9 469 90.8
AL2G19600 Arabidopsis lyrata HOM05D005039 ORTHO05D006145 1.1e-233 813.1 469 89.8
Carub.0002s1015 Capsella rubella HOM05D005039 ORTHO05D006145 7.0e-233 810.4 469 90.0
AT1G64990 Arabidopsis thaliana HOM05D005039 ORTHO05D006145 7.7e-232 807.0 469 89.3
C02p21070 Brassica napus HOM05D005039 ORTHO05D006145 2.2e-231 805.4 470 90.4
BraA02t06350Z Brassica rapa HOM05D005039 ORTHO05D006145 2.2e-231 805.4 470 90.4
A02p12960 Brassica napus HOM05D005039 ORTHO05D006145 1.2e-229 799.7 471 90.0
BolC2t08248H Brassica oleracea HOM05D005039 ORTHO05D006145 1.0e-228 796.6 493 86.2
Duzib106G2059 Durio zibethinus HOM05D005039 ORTHO05D006145 9.8e-227 790.0 469 87.0
Manes.08G160900 Manihot esculenta HOM05D005039 ORTHO05D006145 1.8e-225 785.8 469 86.4
Nn3g19238 Nelumbo nucifera HOM05D005039 ORTHO05D006145 4.1e-225 784.6 469 85.5
Aqoxy1G03063 Aquilegia oxysepala HOM05D005039 ORTHO05D006145 1.6e-224 782.7 468 85.9
Dinv29126 Davidia involucrata HOM05D005039 ORTHO05D006145 3.5e-224 781.6 469 85.9
Gohir.A02G125900 Gossypium hirsutum HOM05D005039 ORTHO05D006145 4.5e-224 781.2 469 85.3
Gohir.D03G054700 Gossypium hirsutum HOM05D005039 ORTHO05D006145 4.5e-224 781.2 469 85.3
Thecc.05G222600 Theobroma cacao HOM05D005039 ORTHO05D006145 4.5e-224 781.2 469 85.7
Gorai.003G057600 Gossypium raimondii HOM05D005039 ORTHO05D006145 1.0e-223 780.0 469 85.1
MELO3C021899.2 Cucumis melo HOM05D005039 ORTHO05D006145 2.9e-223 778.5 469 85.7
Cfa016075 Carpinus fangiana HOM05D005039 ORTHO05D006145 2.5e-222 775.4 469 85.5
TWI79G0887 Tripterygium wilfordii HOM05D005039 ORTHO05D006145 3.3e-222 775.0 469 85.5
CANSAT21G2526 Cannabis sativa HOM05D005039 ORTHO05D006145 4.2e-222 774.6 469 85.1
Sed0001134 Sechium edule HOM05D005039 ORTHO05D006145 4.2e-222 774.6 469 84.6
CsaV3_2G014060 Cucumis sativus L. HOM05D005039 ORTHO05D006145 5.5e-222 774.2 469 85.9
FAN10G2688 Fragaria x ananassa HOM05D005039 ORTHO05D006145 1.6e-221 772.7 469 85.5
MD07G1310900 Malus domestica HOM05D005039 ORTHO05D006145 1.6e-221 772.7 469 85.9
CSS0008859 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 2.1e-221 772.3 471 85.8
RcHm_v2.0_Chr1g0384591 Rosa chinensis HOM05D005039 ORTHO05D006145 3.6e-221 771.5 469 85.9
Ca_26497_v3 Cicer arietinum L. HOM05D005039 ORTHO05D006145 8.0e-221 770.4 469 84.9
FvH4_7g34230 Fragaria vesca HOM05D005039 ORTHO05D006145 8.0e-221 770.4 469 85.1
TAR629G1612 Trochodendron aralioides HOM05D005039 ORTHO05D006145 1.0e-220 770.0 469 84.6
HanXRQChr16g0512151 Helianthus annuus HOM05D005039 ORTHO05D006145 2.3e-220 768.8 469 84.6
Atru.chr12.1876 Acer truncatum HOM05D005039 ORTHO05D006145 4.0e-220 768.1 469 83.6
Potri.013G077700 Populus trichocarpa HOM05D005039 ORTHO05D006145 8.9e-220 766.9 470 84.3
FAN01G1789 Fragaria x ananassa HOM05D005039 ORTHO05D006145 2.0e-219 765.8 469 84.4
GSVIVG01024328001 Vitis vinifera HOM05D005039 ORTHO05D006145 3.4e-219 765.0 469 84.6
Ciclev10031435m.g Citrus clementina HOM05D005039 ORTHO05D006145 5.7e-219 764.2 469 84.6
Nn1g02122 Nelumbo nucifera HOM05D005039 ORTHO05D006145 7.5e-219 763.8 469 83.8
Glyma.11G109900 Glycine max HOM05D005039 ORTHO05D006145 1.3e-218 763.1 469 83.4
SGA_v2.0_scaffold188G40301 Striga asiatica HOM05D005039 ORTHO05D006145 2.2e-218 762.3 469 83.4
FAN03G0337 Fragaria x ananassa HOM05D005039 ORTHO05D006145 6.3e-218 760.8 471 84.5
QL09p020758 Quercus lobata HOM05D005039 ORTHO05D006145 8.3e-218 760.4 468 84.8
Glyma.12G014800 Glycine max HOM05D005039 ORTHO05D006145 1.4e-217 759.6 469 83.2
Medtr5g005440 Medicago truncatula HOM05D005039 ORTHO05D006145 1.8e-217 759.2 468 83.5
Lj3g0003232 Lotus japonicus HOM05D005039 ORTHO05D006145 2.4e-217 758.8 468 84.2
SalBow7G2894 Salvia bowleyana HOM05D005039 ORTHO05D006145 3.1e-217 758.4 469 82.1
Lalb_Chr09g0320081 Lupinus albus HOM05D005039 ORTHO05D006145 5.4e-217 757.7 468 82.7
Phvul.011G017800 Phaseolus vulgaris HOM05D005039 ORTHO05D006145 7.0e-217 757.3 469 83.2
Lsat_1_v5_gn_9_47921 Lactuca sativa HOM05D005039 ORTHO05D006145 9.2e-217 756.9 469 83.8
Solyc07g045330.3 Solanum lycopersicum HOM05D005039 ORTHO05D006145 1.2e-216 756.5 470 83.4
Sopen07g023860 Solanum pennellii HOM05D005039 ORTHO05D006145 2.7e-216 755.4 470 83.2
MBI04_g12218_MAGBIO Magnolia biondii HOM05D005039 ORTHO05D006145 4.5e-216 754.6 470 83.0
ATR0829G179 Amborella trichopoda HOM05D005039 ORTHO05D006145 5.9e-216 754.2 469 82.7
PSO782G0889 Papaver somniferum HOM05D005039 ORTHO05D006145 1.3e-215 753.1 470 82.3
Migut.C00159 Erythranthe guttata HOM05D005039 ORTHO05D006145 1.7e-215 752.7 469 82.7
MSTRG.24939 Avicennia marina HOM05D005039 ORTHO05D006145 3.8e-215 751.5 469 81.9
ECA232G0266 Erigeron canadensis HOM05D005039 ORTHO05D006145 1.9e-214 749.2 463 84.0
PSO063G4466 Papaver somniferum HOM05D005039 ORTHO05D006145 2.5e-214 748.8 470 81.9
Sabra13G0066500 Salix brachista HOM05D005039 ORTHO05D006145 7.3e-214 747.3 506 78.3
CAN.G437.12 Capsicum annuum HOM05D005039 ORTHO05D006145 9.5e-214 746.9 470 82.3
Ah.13g072370 Amaranthus hybridus HOM05D005039 ORTHO05D006145 1.2e-213 746.5 469 83.4
Hund09811 Selenicereus undatus HOM05D005039 ORTHO05D006145 4.7e-213 744.6 493 79.5
vmacro06372 Vaccinium macrocarpon HOM05D005039 ORTHO05D006145 4.0e-212 741.5 506 78.1
Duzib128G1855 Durio zibethinus HOM05D005039 ORTHO05D006145 4.4e-211 738.0 469 81.9
EL10Ac3g05043 Beta vulgaris HOM05D005039 ORTHO05D006145 5.4e-209 731.1 545 73.0
Eucgr.K00067 Eucalyptus grandis HOM05D005039 ORTHO05D006145 5.0e-207 724.5 452 83.6
AUR62002093 Chenopodium quinoa HOM05D005039 ORTHO05D006145 3.6e-205 718.4 469 80.2
Zm00001eb430290 Zea mays HOM05D005039 ORTHO05D006145 3.1e-204 715.3 469 78.5
Os04g0600800 Oryza sativa ssp. japonica HOM05D005039 ORTHO05D006145 1.2e-203 713.4 469 78.5
Peaxi162Scf00802g00029 Petunia axillaris HOM05D005039 ORTHO05D006145 1.7e-202 709.5 470 79.8
PGR142G1194 Punica granatum HOM05D005039 ORTHO05D006145 1.7e-199 699.5 441 82.1
Nitab4.5_0006992g0040 Nicotiana tabacum HOM05D005039 ORTHO05D006145 1.5e-198 696.4 491 76.2
Nitab4.5_0009864g0010 Nicotiana tabacum HOM05D005039 ORTHO05D006145 8.1e-197 690.6 470 78.3
Oeu027894.4 Olea europaea HOM05D005039 ORTHO05D006145 4.9e-194 681.4 492 74.2
Sc13g0011000 Simmondsia chinensis HOM05D005039 ORTHO05D006145 9.2e-193 677.2 418 84.4
arahy.Tifrunner.gnm1.ann1.GG16T8 Arachis hypogaea HOM05D005039 ORTHO05D006145 2.8e-189 665.6 418 82.3
arahy.Tifrunner.gnm1.ann1.IZT0PT Arachis hypogaea HOM05D005039 ORTHO05D006145 2.8e-189 665.6 418 82.3
ClCG09G017310 Citrullus lanatus HOM05D005039 ORTHO05D006145 1.8e-188 662.9 397 86.6
Mapoly0094s0006 Marchantia polymorpha HOM05D005039 ORTHO05D006145 3.5e-184 648.7 469 70.8
Actinidia08765 Actinidia chinensis HOM05D005039 ORTHO05D006145 5.1e-183 644.8 425 80.2
Rhsim03G0224300 Rhododendron simsii HOM05D005039 ORTHO05D006145 1.5e-182 643.3 468 75.2
unitig_0.g2070 Utricularia gibba HOM05D005039 ORTHO05D006145 9.0e-180 634.0 461 74.2
DCAR_020429 Daucus carota HOM05D005039 ORTHO05D006145 2.9e-178 629.0 383 85.4
AUR62028211 Chenopodium quinoa HOM05D005039 ORTHO05D006145 4.9e-178 628.2 423 77.8
CSS0032758 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 7.8e-176 620.9 469 71.9
SMO304G0068 Selaginella moellendorffii HOM05D005039 ORTHO05D006145 4.8e-165 585.1 465 65.8
Prupe.2G329100 Prunus persica HOM05D005039 ORTHO05D006145 4.2e-161 572.0 340 89.1
CiPaw.05G212800 Carya illinoinensis HOM05D005039 ORTHO05D006145 2.5e-158 562.8 350 81.1
VMungo1127G0275 Vigna mungo HOM05D005039 ORTHO05D006145 9.6e-158 560.8 374 77.3
HPP92_014410 Vanilla planifolia HOM05D005039 ORTHO05D006145 8.2e-157 557.8 469 65.9
Cc02_g00100 Coffea canephora HOM05D005039 ORTHO05D006145 4.0e-156 555.4 373 77.2
Psat7g155320 Pisum sativum HOM05D005039 ORTHO05D006145 4.0e-156 555.4 365 79.7
CBR_g72647 Chara braunii HOM05D005039 ORTHO05D006145 7.6e-155 551.2 470 59.1
BcaB05g25317 Brassica carinata HOM05D005039 ORTHO05D006145 7.4e-150 534.6 312 88.1
Lj3A884T54 Lonicera japonica HOM05D005039 ORTHO05D006145 5.3e-148 528.5 324 86.1
Actinidia34332 Actinidia chinensis HOM05D005039 ORTHO05D006145 1.9e-129 466.8 308 81.2
CDE11G0732 Ceratophyllum demersum HOM05D005039 ORTHO05D006145 2.6e-126 456.4 324 75.9
MD01G1239200 Malus domestica HOM05D005039 ORTHO05D006145 2.5e-121 439.9 365 65.8
PGSC0003DMG401017405 Solanum tuberosum HOM05D005039 ORTHO05D006145 5.7e-110 402.1 246 85.8
COL.COLO4_15139 Corchorus olitorius HOM05D005039 ORTHO05D006145 3.1e-87 326.6 312 60.3
Haze_00371 Corylus avellana HOM05D005039 ORTHO05D006145 8.1e-80 302.0 238 68.9
AagrBONN_evm.TU.Sc2ySwM_369.165 Anthoceros agrestis HOM05D005039 ORTHO05D006145 2.6e-78 297.0 302 54.6
PGSC0003DMG402017405 Solanum tuberosum HOM05D005039 ORTHO05D006145 9.9e-78 295.0 182 78.0
Cre16.g674739 Chlamydomonas reinhardtii HOM05D005039 ORTHO05D006145 2.4e-76 290.4 505 36.4
Actinidia24520 Actinidia chinensis HOM05D005039 ORTHO05D006145 9.2e-76 288.5 173 82.1
BcaC03g14670 Brassica carinata HOM05D005039 ORTHO05D006145 1.6e-75 287.7 160 96.2
AagrBONN_evm.TU.Sc2ySwM_117.727 Anthoceros agrestis HOM05D005039 ORTHO05D006145 5.8e-70 269.2 217 57.6
AagrBONN_evm.TU.Sc2ySwM_369.410 Anthoceros agrestis HOM05D005039 ORTHO05D006145 4.9e-69 266.2 294 53.1
BcaB05g24073 Brassica carinata HOM05D005039 ORTHO05D006145 1.3e-64 251.5 140 96.4
CARHR057320 Cardamine hirsuta HOM05D005039 ORTHO05D006145 2.1e-64 250.8 407 44.2
EL10Ac3g05835 Beta vulgaris HOM05D005039 ORTHO05D006145 6.9e-55 219.2 195 65.6
Cc02_g00110 Coffea canephora HOM05D005039 ORTHO05D006145 2.2e-53 214.2 119 95.0
MCO06G137 Micromonas commoda HOM05D005039 ORTHO05D006145 5.6e-49 199.5 319 38.2
PRCOL_00000150 Prasinoderma coloniale HOM05D005039 ORTHO05D006145 4.0e-47 193.4 491 32.0
SEGI_29432 Sequoiadendron giganteum HOM05D005039 ORTHO05D006145 2.5e-44 184.1 111 88.3
CDE11G0023 Ceratophyllum demersum HOM05D005039 ORTHO05D006145 3.5e-43 180.3 107 81.3
Cpa.g.sc43.133 Carica papaya HOM05D005039 ORTHO05D006145 2.4e-39 167.5 111 80.2
SEGI_13634 Sequoiadendron giganteum HOM05D005039 ORTHO05D006145 6.9e-39 166.0 104 76.9
CSS0027952 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 1.3e-37 161.8 91 91.2
CSS0015728 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 5.9e-30 136.3 76 85.5
Carub.0008s0531 Capsella rubella HOM05D005039 ORTHO05D006145 9.4e-28 129.0 79 87.3
Cpa.g.sc43.136 Carica papaya HOM05D005039 ORTHO05D006145 6.1e-27 126.3 72 86.1
Cpa.g.sc43.132 Carica papaya HOM05D005039 ORTHO05D006145 1.8e-26 124.8 74 81.1
COL.COLO4_15138 Corchorus olitorius HOM05D005039 ORTHO05D006145 5.1e-26 123.2 72 86.1
ClCG09G017320 Citrullus lanatus HOM05D005039 ORTHO05D006145 1.5e-25 121.7 72 81.9
Oeu028985.2 Olea europaea HOM05D005039 ORTHO05D006145 1.2e-22 112.1 99 60.6
CSS0031224 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 2.0e-22 111.3 74 74.3
SHI14975 Sapria himalayana HOM05D000023 ORTHO05D000014 1.0e-21 109.0 79 72.2
SEGI_05893 Sequoiadendron giganteum HOM05D005039 ORTHO05D006145 4.2e-20 103.6 57 82.5
Solyc07g045270.2 Solanum lycopersicum HOM05D005039 ORTHO05D006145 6.1e-19 99.8 57 78.9
Carub.0008s0533 Capsella rubella HOM05D005039 ORTHO05D006145 1.1e-15 89.0 52 90.4
MD01G1239000 Malus domestica HOM05D005039 ORTHO05D006145 2.5e-12 77.8 46 91.3
EL10Ac7g16242 Beta vulgaris HOM05D005039 ORTHO05D006145 4.2e-12 77.0 48 79.2
Potri.019G042201 Populus trichocarpa HOM05D005039 ORTHO05D006145 7.2e-12 76.3 52 80.8
Zm00001eb027530 Zea mays HOM05D011105 ORTHO05D007705 7.2e-12 76.3 54 74.1
GSVIVG01028619001 Vitis vinifera HOM05D005039 ORTHO05D048867 1.7e-08 65.1 74 51.4


User provided reference genes

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