Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung01623 Brassica carinata HOM05D006582 ORTHO05D008313 4.3e-167 591.3 306 100.0
BcaC09g50542 Brassica carinata HOM05D006582 ORTHO05D008313 2.8e-166 588.6 306 99.0
C01p24110 Brassica napus HOM05D006582 ORTHO05D008313 1.8e-165 585.9 306 98.7
A01p19210 Brassica napus HOM05D006582 ORTHO05D008313 5.3e-165 584.3 306 98.4
BraA01t01863Z Brassica rapa HOM05D006582 ORTHO05D008313 1.2e-164 583.2 306 98.0
AT4G27750 Arabidopsis thaliana HOM05D006582 ORTHO05D008313 1.6e-161 572.8 306 95.8
Thhalv10025816m.g Eutrema salsugineum HOM05D006582 ORTHO05D008313 2.1e-161 572.4 306 96.1
BolC1t02368H Brassica oleracea HOM05D006582 ORTHO05D008313 2.7e-161 572.0 335 90.1
Sp7g25720 Schrenkiella parvula HOM05D006582 ORTHO05D008313 2.7e-161 572.0 306 96.7
AL7G24900 Arabidopsis lyrata HOM05D006582 ORTHO05D008313 3.0e-160 568.5 307 95.8
Carub.0007s1306 Capsella rubella HOM05D006582 ORTHO05D008313 3.0e-160 568.5 306 95.4
CARHR235480 Cardamine hirsuta HOM05D006582 ORTHO05D008313 4.4e-159 564.7 306 94.1
BcaNung01628 Brassica carinata HOM05D006582 ORTHO05D008313 4.4e-151 538.1 306 92.5
Aa31LG3G9690 Aethionema arabicum HOM05D006582 ORTHO05D008313 2.0e-148 529.3 306 87.6
BcaNung01632 Brassica carinata HOM05D006582 ORTHO05D008313 2.7e-145 518.8 320 87.2
THA.LOC104811904 Tarenaya hassleriana HOM05D006582 ORTHO05D008313 2.9e-139 498.8 306 84.3
Thecc.03G203200 Theobroma cacao HOM05D006582 ORTHO05D008313 3.3e-122 442.2 313 74.4
Cfa016201 Carpinus fangiana HOM05D006582 ORTHO05D008313 4.3e-122 441.8 306 74.2
Duzib068G0295 Durio zibethinus HOM05D006582 ORTHO05D008313 4.3e-122 441.8 312 73.7
Dinv29249 Davidia involucrata HOM05D006582 ORTHO05D008313 1.6e-121 439.9 306 73.2
Hma1.2p1_0415F.1_g148010 Hydrangea macrophylla HOM05D006582 ORTHO05D008313 1.6e-121 439.9 306 71.2
PGR142G1628 Punica granatum HOM05D006582 ORTHO05D008313 2.8e-121 439.1 308 72.4
CiPaw.06G044200 Carya illinoinensis HOM05D006582 ORTHO05D008313 3.6e-121 438.7 306 72.5
COL.COLO4_16812 Corchorus olitorius HOM05D006582 ORTHO05D008313 6.1e-121 438.0 312 73.7
Gohir.D08G113800 Gossypium hirsutum HOM05D006582 ORTHO05D008313 1.0e-120 437.2 313 72.8
Actinidia34241 Actinidia chinensis HOM05D006582 ORTHO05D008313 2.3e-120 436.0 306 73.5
RcHm_v2.0_Chr1g0355871 Rosa chinensis HOM05D006582 ORTHO05D008313 2.3e-120 436.0 308 72.7
Sed0002968 Sechium edule HOM05D006582 ORTHO05D008313 5.2e-120 434.9 306 72.2
MELO3C005901.2 Cucumis melo HOM05D006582 ORTHO05D008313 6.8e-120 434.5 307 73.3
Prupe.2G171600 Prunus persica HOM05D006582 ORTHO05D008313 6.8e-120 434.5 306 72.5
Gorai.004G122700 Gossypium raimondii HOM05D006582 ORTHO05D008313 1.5e-119 433.3 312 72.4
CsaV3_5G000310 Cucumis sativus L. HOM05D006582 ORTHO05D008313 5.8e-119 431.4 306 71.9
Rhsim03G0211600 Rhododendron simsii HOM05D006582 ORTHO05D008313 5.8e-119 431.4 306 71.9
GSVIVG01038593001 Vitis vinifera HOM05D006582 ORTHO05D008313 2.9e-118 429.1 306 70.6
Migut.F00182 Erythranthe guttata HOM05D006582 ORTHO05D008313 3.7e-118 428.7 306 71.2
TWI60G0746 Tripterygium wilfordii HOM05D006582 ORTHO05D008313 3.7e-118 428.7 318 72.0
MD07G1135900 Malus domestica HOM05D006582 ORTHO05D008313 8.3e-118 427.6 306 72.2
CANSAT21G1996 Cannabis sativa HOM05D006582 ORTHO05D008313 1.1e-117 427.2 306 72.2
FAN03G0584 Fragaria x ananassa HOM05D006582 ORTHO05D008313 1.9e-117 426.4 306 72.2
FAN06G3963 Fragaria x ananassa HOM05D006582 ORTHO05D008313 1.9e-117 426.4 306 71.9
FvH4_7g14460 Fragaria vesca HOM05D006582 ORTHO05D008313 3.2e-117 425.6 306 71.9
FAN06G2233 Fragaria x ananassa HOM05D006582 ORTHO05D008313 3.2e-117 425.6 306 71.9
Lj3A900T44 Lonicera japonica HOM05D006582 ORTHO05D008313 3.2e-117 425.6 306 71.2
SGA_v2.0_scaffold18G08434 Striga asiatica HOM05D006582 ORTHO05D008313 4.1e-117 425.2 306 70.9
Lsat_1_v5_gn_2_135281 Lactuca sativa HOM05D006582 ORTHO05D008313 9.2e-117 424.1 306 69.6
CSS0043436 Camellia sinensis var. sinensis HOM05D006582 ORTHO05D008313 1.2e-116 423.7 306 71.2
Haze_00249 Corylus avellana HOM05D006582 ORTHO05D008313 1.2e-116 423.7 334 67.7
Haze_00255 Corylus avellana HOM05D006582 ORTHO05D008313 1.2e-116 423.7 334 67.7
FAN01G0099 Fragaria x ananassa HOM05D006582 ORTHO05D008313 1.2e-116 423.7 306 71.9
PGSC0003DMG402018519 Solanum tuberosum HOM05D006582 ORTHO05D008313 1.6e-116 423.3 306 71.6
TAR374G0762 Trochodendron aralioides HOM05D006582 ORTHO05D008313 1.6e-116 423.3 306 69.3
Ciclev10021376m.g Citrus clementina HOM05D006582 ORTHO05D008313 2.0e-116 422.9 307 70.4
Cc04_g16300 Coffea canephora HOM05D006582 ORTHO05D008313 2.0e-116 422.9 306 70.6
Sopen03g022560 Solanum pennellii HOM05D006582 ORTHO05D008313 2.0e-116 422.9 306 71.2
Solyc03g082820.3 Solanum lycopersicum HOM05D006582 ORTHO05D008313 2.7e-116 422.5 306 70.9
CSS0003388 Camellia sinensis var. sinensis HOM05D006582 ORTHO05D008313 3.5e-116 422.2 306 70.9
Peaxi162Scf00740g00331 Petunia axillaris HOM05D006582 ORTHO05D008313 3.5e-116 422.2 308 70.8
AUR62035580 Chenopodium quinoa HOM05D006582 ORTHO05D008313 4.6e-116 421.8 306 69.6
Manes.01G148600 Manihot esculenta HOM05D006582 ORTHO05D008313 8.6e-115 417.5 306 70.6
CAN.G481.47 Capsicum annuum HOM05D006582 ORTHO05D008313 1.5e-114 416.8 306 70.3
Ah.07g205040 Amaranthus hybridus HOM05D006582 ORTHO05D008313 1.9e-114 416.4 278 74.5
Nn6g34389 Nelumbo nucifera HOM05D006582 ORTHO05D008313 4.3e-114 415.2 307 68.4
EL10Ac3g05224 Beta vulgaris HOM05D006582 ORTHO05D008313 5.6e-114 414.8 278 73.7
Sabra15G0024300 Salix brachista HOM05D006582 ORTHO05D008313 7.3e-114 414.5 309 68.6
Glyma.11G108800 Glycine max HOM05D006582 ORTHO05D008313 1.2e-113 413.7 314 69.7
AUR62006048 Chenopodium quinoa HOM05D006582 ORTHO05D008313 1.6e-113 413.3 270 74.8
SalBow4G1606 Salvia bowleyana HOM05D006582 ORTHO05D008313 6.2e-113 411.4 306 68.3
arahy.Tifrunner.gnm1.ann1.AV4C6H Arachis hypogaea HOM05D006582 ORTHO05D008313 8.0e-113 411.0 308 69.5
arahy.Tifrunner.gnm1.ann1.D33ADG Arachis hypogaea HOM05D006582 ORTHO05D008313 8.0e-113 411.0 308 69.5
QL09p007748 Quercus lobata HOM05D006582 ORTHO05D008313 1.1e-112 410.6 311 68.8
VMungo1127G0470 Vigna mungo HOM05D006582 ORTHO05D008313 3.1e-112 409.1 308 68.5
PSO782G4269 Papaver somniferum HOM05D006582 ORTHO05D008313 4.0e-112 408.7 304 68.1
Sc19g0000750 Simmondsia chinensis HOM05D006582 ORTHO05D008313 4.0e-112 408.7 309 68.0
Medtr4g078140 Medicago truncatula HOM05D006582 ORTHO05D008313 5.2e-112 408.3 310 68.4
TPR.G19615 Trifolium pratense HOM05D006582 ORTHO05D008313 1.5e-111 406.8 310 68.4
Phvul.011G018800 Phaseolus vulgaris HOM05D006582 ORTHO05D008313 2.6e-111 406.0 310 68.4
HanXRQChr07g0206401 Helianthus annuus HOM05D006582 ORTHO05D008313 4.4e-111 405.2 305 68.2
vmacro06405 Vaccinium macrocarpon HOM05D006582 ORTHO05D008313 4.4e-111 405.2 352 62.5
Lj3g0025694 Lotus japonicus HOM05D006582 ORTHO05D008313 7.5e-111 404.4 312 68.9
Ca_18952_v3 Cicer arietinum L. HOM05D006582 ORTHO05D008313 6.4e-110 401.4 310 67.1
unitig_747.g21740 Utricularia gibba HOM05D006582 ORTHO05D008313 8.3e-110 401.0 306 65.4
Aqoxy7G00041 Aquilegia oxysepala HOM05D006582 ORTHO05D008313 1.4e-109 400.2 306 66.7
Psat7g170040 Pisum sativum HOM05D006582 ORTHO05D008313 1.4e-109 400.2 311 67.2
Hund11634 Selenicereus undatus HOM05D006582 ORTHO05D008313 1.4e-109 400.2 271 72.3
Glyma.12G016600 Glycine max HOM05D006582 ORTHO05D008313 5.1e-107 391.7 311 66.9
DCAR_008960 Daucus carota HOM05D006582 ORTHO05D008313 2.5e-106 389.4 296 68.2
Lalb_Chr03g0024361 Lupinus albus HOM05D006582 ORTHO05D008313 2.3e-104 382.9 315 64.1
Hund21029 Selenicereus undatus HOM05D006582 ORTHO05D008313 4.0e-104 382.1 296 65.9
MD01G1064000 Malus domestica HOM05D006582 ORTHO05D008313 2.0e-103 379.8 325 65.2
ECA238G3804 Erigeron canadensis HOM05D006582 ORTHO05D008313 9.2e-101 370.9 278 69.4
SGA_v2.0_scaffold44G16825 Striga asiatica HOM05D006582 ORTHO05D008313 6.0e-100 368.2 306 63.1
MBI04_g35986_MAGBIO Magnolia biondii HOM05D006582 ORTHO05D008313 2.3e-99 366.3 306 62.4
Nitab4.5_0002780g0150 Nicotiana tabacum HOM05D006582 ORTHO05D008313 1.7e-94 350.1 324 58.6
Nitab4.5_0007755g0010 Nicotiana tabacum HOM05D006582 ORTHO05D008313 5.1e-91 338.6 346 54.6
ATR0933G001 Amborella trichopoda HOM05D006582 ORTHO05D008313 5.6e-90 335.1 322 56.5
Os06g0129300 Oryza sativa ssp. japonica HOM05D006582 ORTHO05D008313 3.8e-86 322.4 272 62.5
Gohir.A08G102500 Gossypium hirsutum HOM05D006582 ORTHO05D008313 5.4e-85 318.5 237 70.9
Hma1.2p1_0415F.1_g148020 Hydrangea macrophylla HOM05D006582 ORTHO05D008313 1.3e-83 313.9 231 68.4
Zm00001eb378450 Zea mays HOM05D006582 ORTHO05D008313 5.1e-83 312.0 272 59.6
HPP92_007389 Vanilla planifolia HOM05D006582 ORTHO05D008313 6.2e-81 305.1 314 54.1
Eucgr.K00407 Eucalyptus grandis HOM05D006582 ORTHO05D008313 1.1e-80 304.3 233 68.2
MD01G1064500 Malus domestica HOM05D006582 ORTHO05D008313 8.4e-78 294.7 202 73.3
MD01G1063600 Malus domestica HOM05D006582 ORTHO05D008313 3.2e-69 266.2 260 56.5
CDE04G1908 Ceratophyllum demersum HOM05D006582 ORTHO05D008313 8.7e-67 258.1 306 47.7
Potri.015G029300 Populus trichocarpa HOM05D006582 ORTHO05D008313 2.1e-65 253.4 209 65.1
Os10g0520900 Oryza sativa ssp. japonica HOM05D006582 ORTHO05D008313 4.5e-63 245.7 261 48.7
Zm00001eb021230 Zea mays HOM05D006582 ORTHO05D008313 3.0e-59 233.0 287 43.9
Cpa.g.sc3.116 Carica papaya HOM05D006582 ORTHO05D008313 2.0e-55 220.3 192 64.1
Mapoly0081s0017 Marchantia polymorpha HOM05D006582 ORTHO05D008313 6.7e-51 205.3 316 39.6
PGSC0003DMG401018519 Solanum tuberosum HOM05D006582 ORTHO05D008313 2.2e-46 190.3 155 67.1
SMO356G0114 Selaginella moellendorffii HOM05D001613 ORTHO05D001556 5.7e-42 175.6 288 36.5
AagrBONN_evm.TU.Sc2ySwM_228.4673 Anthoceros agrestis HOM05D006582 ORTHO05D008313 1.5e-37 161.0 244 39.3
Hma1.2p1_0512F.1_g169380 Hydrangea macrophylla HOM05D006582 ORTHO05D008313 5.2e-35 152.5 182 50.0
Pp3c14_24810 Physcomitrium patens HOM05D006582 ORTHO05D008313 8.8e-35 151.8 247 36.8
CiPaw.05G199600 Carya illinoinensis HOM05D006582 ORTHO05D008313 5.3e-32 142.5 116 60.3
CBR_g57838 Chara braunii HOM05D006582 ORTHO05D008313 3.6e-28 129.8 228 37.3
Hma1.2p1_0415F.1_g148000 Hydrangea macrophylla HOM05D006582 ORTHO05D008313 1.7e-25 120.9 88 68.2
SHI19111 Sapria himalayana HOM05D006582 ORTHO05D008313 1.9e-21 107.5 93 60.2
SHI19113 Sapria himalayana HOM05D006582 ORTHO05D008313 1.2e-18 98.2 74 64.9
SEGI_26283 Sequoiadendron giganteum HOM05D006582 ORTHO05D008313 3.1e-16 90.1 78 61.5
Rhsim03G0115100 Rhododendron simsii HOM05D006582 ORTHO05D023108 3.5e-15 86.7 166 36.1
MD07G1135700 Malus domestica HOM05D006582 ORTHO05D008313 2.9e-09 67.0 79 53.2
SEGI_35321 Sequoiadendron giganteum HOM05D006582 ORTHO05D008313 8.6e-06 55.5 57 40.4


User provided reference genes

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