Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung01603 Brassica carinata HOM05D007179 ORTHO05D009124 2.5e-156 555.4 287 100.0
A01p19410 Brassica napus HOM05D007179 ORTHO05D009124 1.3e-104 383.6 250 82.4
BraA01t01881Z Brassica rapa HOM05D007179 ORTHO05D009124 4.9e-104 381.7 250 82.4
BolC7t46066H Brassica oleracea HOM05D007179 ORTHO05D009124 5.6e-92 341.7 253 75.9
C01p24450 Brassica napus HOM05D007179 ORTHO05D009124 8.4e-72 274.6 169 85.2
Sp7g25970 Schrenkiella parvula HOM05D007179 ORTHO05D009124 1.5e-60 237.3 162 80.2
BraA03t14832Z Brassica rapa HOM05D007179 ORTHO05D009124 9.7e-60 234.6 170 78.8
Thhalv10026434m.g Eutrema salsugineum HOM05D007179 ORTHO05D009124 9.7e-60 234.6 166 78.9
A03p57660 Brassica napus HOM05D007179 ORTHO05D009124 1.1e-58 231.1 170 77.6
AL7G24590 Arabidopsis lyrata HOM05D007179 ORTHO05D009124 1.4e-58 230.7 160 78.8
C07p55870 Brassica napus HOM05D007179 ORTHO05D009124 3.1e-58 229.6 170 77.6
AT4G28025 Arabidopsis thaliana HOM05D007179 ORTHO05D009124 9.1e-58 228.0 161 79.5
BolC1t02394H Brassica oleracea HOM05D007179 ORTHO05D009124 1.0e-56 224.6 124 92.7
Carub.0007s1277 Capsella rubella HOM05D007179 ORTHO05D009124 1.1e-55 221.1 160 76.9
BcaC06g32651 Brassica carinata HOM05D007179 ORTHO05D009124 1.4e-53 214.2 164 75.0
CARHR235720 Cardamine hirsuta HOM05D007179 ORTHO05D009124 9.7e-52 208.0 166 71.1
Aa31LG3G160 Aethionema arabicum HOM05D007179 ORTHO05D009124 1.2e-41 174.5 160 65.6
THA.LOC104817810 Tarenaya hassleriana HOM05D007179 ORTHO05D009124 6.3e-35 152.1 156 57.1
Rhsim01G0010000 Rhododendron simsii HOM05D007179 ORTHO05D009124 2.7e-33 146.7 117 66.7
SalBow1G0390 Salvia bowleyana HOM05D007179 ORTHO05D009124 2.9e-32 143.3 113 68.1
CiPaw.08G039500 Carya illinoinensis HOM05D007179 ORTHO05D009124 3.8e-32 142.9 150 58.0
CANSAT11G0330 Cannabis sativa HOM05D007179 ORTHO05D009124 8.5e-32 141.7 125 61.6
CSS0047035 Camellia sinensis var. sinensis HOM05D007179 ORTHO05D009124 2.5e-31 140.2 114 67.5
Prupe.1G095600 Prunus persica HOM05D007179 ORTHO05D009124 3.2e-31 139.8 123 61.8
Cpa.g.c29666.1 Carica papaya HOM05D007179 ORTHO05D009124 5.5e-31 139.0 118 61.0
GSVIVG01032307001 Vitis vinifera HOM05D007179 ORTHO05D009124 1.6e-30 137.5 130 58.5
Psat0s236g0160 Pisum sativum HOM05D007179 ORTHO05D009124 2.1e-30 137.1 132 55.3
Gorai.009G007600 Gossypium raimondii HOM05D007179 ORTHO05D009124 2.7e-30 136.7 156 53.8
Dinv41297 Davidia involucrata HOM05D007179 ORTHO05D009124 4.7e-30 136.0 132 58.3
Gohir.D05G007500 Gossypium hirsutum HOM05D007179 ORTHO05D009124 4.7e-30 136.0 156 53.8
Sed0008122 Sechium edule HOM05D007179 ORTHO05D009124 4.7e-30 136.0 134 58.2
MSTRG.26242 Avicennia marina HOM05D007179 ORTHO05D009124 6.1e-30 135.6 117 62.4
THA.LOC104811817 Tarenaya hassleriana HOM05D007179 ORTHO05D009124 6.1e-30 135.6 151 55.6
Migut.K00269 Erythranthe guttata HOM05D007179 ORTHO05D009124 1.8e-29 134.0 122 59.8
Medtr4g129320 Medicago truncatula HOM05D007179 ORTHO05D009124 1.8e-29 134.0 122 59.0
arahy.Tifrunner.gnm1.ann1.8TJD28 Arachis hypogaea HOM05D007179 ORTHO05D009124 2.3e-29 133.7 120 60.8
Potri.006G175600 Populus trichocarpa HOM05D007179 ORTHO05D009124 2.3e-29 133.7 120 60.8
arahy.Tifrunner.gnm1.ann1.7FN6WP Arachis hypogaea HOM05D007179 ORTHO05D009124 4.0e-29 132.9 120 60.8
CiPaw.07G187200 Carya illinoinensis HOM05D007179 ORTHO05D009124 5.2e-29 132.5 114 63.2
Gohir.A05G006600 Gossypium hirsutum HOM05D007179 ORTHO05D009124 5.2e-29 132.5 156 52.6
Nn1g04316 Nelumbo nucifera HOM05D007179 ORTHO05D009124 5.2e-29 132.5 119 59.7
Actinidia24032 Actinidia chinensis HOM05D007179 ORTHO05D009124 1.2e-28 131.3 107 67.3
Oeu058831.1 Olea europaea HOM05D007179 ORTHO05D009124 1.2e-28 131.3 157 50.3
MD16G1263600 Malus domestica HOM05D007179 ORTHO05D009124 2.0e-28 130.6 129 56.6
PGSC0003DMG400027448 Solanum tuberosum HOM05D007179 ORTHO05D009124 2.6e-28 130.2 146 52.1
TAR626G0641 Trochodendron aralioides HOM05D007179 ORTHO05D009124 2.6e-28 130.2 131 55.0
Lalb_Chr13g0300481 Lupinus albus HOM05D007179 ORTHO05D009124 3.4e-28 129.8 114 62.3
TWI63G0613 Tripterygium wilfordii HOM05D007179 ORTHO05D009124 5.7e-28 129.0 114 60.5
Atru.chr7.533 Acer truncatum HOM05D007179 ORTHO05D009124 7.5e-28 128.6 122 59.0
RcHm_v2.0_Chr4g0404651 Rosa chinensis HOM05D007179 ORTHO05D009124 7.5e-28 128.6 129 55.8
Sabra06G0134300 Salix brachista HOM05D007179 ORTHO05D009124 1.3e-27 127.9 120 56.7
Solyc07g006490.3 Solanum lycopersicum HOM05D007179 ORTHO05D009124 1.7e-27 127.5 109 63.3
PGR102G1777 Punica granatum HOM05D007179 ORTHO05D009124 2.2e-27 127.1 113 62.8
Sopen07g002570 Solanum pennellii HOM05D007179 ORTHO05D009124 2.8e-27 126.7 109 64.2
Cc06_g13840 Coffea canephora HOM05D007179 ORTHO05D009124 3.7e-27 126.3 117 61.5
Thecc.09G162500 Theobroma cacao HOM05D007179 ORTHO05D009124 3.7e-27 126.3 156 52.6
FvH4_4g08570 Fragaria vesca HOM05D007179 ORTHO05D009124 6.3e-27 125.6 134 53.7
Eucgr.C02437 Eucalyptus grandis HOM05D007179 ORTHO05D009124 3.1e-26 123.2 118 55.1
Lj9A729T43 Lonicera japonica HOM05D007179 ORTHO05D009124 9.1e-26 121.7 117 58.1
AUR62040282 Chenopodium quinoa HOM05D007179 ORTHO05D009124 2.7e-25 120.2 128 54.7
ECA236G0374 Erigeron canadensis HOM05D007179 ORTHO05D009124 3.5e-25 119.8 117 56.4
Nitab4.5_0011540g0010 Nicotiana tabacum HOM05D007179 ORTHO05D009124 3.5e-25 119.8 96 68.8
CAN.G584.44 Capsicum annuum HOM05D007179 ORTHO05D009124 4.5e-25 119.4 116 59.5
ClCG11G012230 Citrullus lanatus HOM05D007179 ORTHO05D009124 4.5e-25 119.4 135 54.8
Glyma.17G067900 Glycine max HOM05D007179 ORTHO05D009124 4.5e-25 119.4 122 54.1
Lj4g0019685 Lotus japonicus HOM05D007179 ORTHO05D009124 4.5e-25 119.4 115 54.8
Peaxi162Scf00457g00318 Petunia axillaris HOM05D007179 ORTHO05D009124 4.5e-25 119.4 144 50.7
MBI15_g26085_MAGBIO Magnolia biondii HOM05D007179 ORTHO05D009124 1.3e-24 117.9 101 63.4
Ciclev10009752m.g Citrus clementina HOM05D007179 ORTHO05D009124 1.7e-24 117.5 118 55.1
Hund08993 Selenicereus undatus HOM05D007179 ORTHO05D009124 1.7e-24 117.5 127 52.8
Sc14g0001110 Simmondsia chinensis HOM05D007179 ORTHO05D009124 2.3e-24 117.1 143 49.0
BcaC09g50519 Brassica carinata HOM05D000147 ORTHO05D013131 5.0e-24 115.9 63 90.5
MELO3C004033.2 Cucumis melo HOM05D007179 ORTHO05D009124 5.0e-24 115.9 150 48.7
vmacro13080 Vaccinium macrocarpon HOM05D007179 ORTHO05D009124 5.0e-24 115.9 82 70.7
VMungo1215G3157 Vigna mungo HOM05D007179 ORTHO05D009124 5.0e-24 115.9 135 49.6
CsaV3_2G008330 Cucumis sativus L. HOM05D007179 ORTHO05D009124 1.1e-23 114.8 173 42.8
COL.COLO4_16058 Corchorus olitorius HOM05D007179 ORTHO05D009124 1.9e-23 114.0 126 54.8
DCAR_017946 Daucus carota HOM05D007179 ORTHO05D009124 3.3e-23 113.2 115 59.1
Aqoxy7G03201 Aquilegia oxysepala HOM05D007179 ORTHO05D009124 4.2e-23 112.8 159 46.5
Manes.06G029800 Manihot esculenta HOM05D007179 ORTHO05D009124 4.2e-23 112.8 115 53.9
Lsat_1_v5_gn_8_65641 Lactuca sativa HOM05D007179 ORTHO05D009124 5.5e-23 112.5 116 55.2
HanXRQChr05g0136491 Helianthus annuus HOM05D007179 ORTHO05D009124 9.5e-23 111.7 78 71.8
Duzib150G1658 Durio zibethinus HOM05D007179 ORTHO05D009124 3.6e-22 109.8 94 63.8
AUR62039974 Chenopodium quinoa HOM05D007179 ORTHO05D009124 4.7e-22 109.4 123 53.7
unitig_37.g12688 Utricularia gibba HOM05D007179 ORTHO05D009124 1.8e-21 107.5 111 55.0
EL10Ac8g18859 Beta vulgaris HOM05D007179 ORTHO05D009124 2.3e-21 107.1 81 65.4
Phvul.003G150500 Phaseolus vulgaris HOM05D007179 ORTHO05D009124 3.0e-21 106.7 132 48.5
FAN22G0121 Fragaria x ananassa HOM05D007179 ORTHO05D009124 6.8e-21 105.5 78 69.2
PSO063G6628 Papaver somniferum HOM05D007179 ORTHO05D009124 1.2e-20 104.8 116 53.4
BcaC09g50518 Brassica carinata HOM05D005733 ORTHO05D007442 1.5e-20 104.4 246 39.0
PSO782G3484 Papaver somniferum HOM05D007179 ORTHO05D009124 2.6e-20 103.6 101 58.4
BcaC09g50520 Brassica carinata HOM05D005733 ORTHO05D007442 6.3e-19 99.0 78 70.5
ATR0580G253 Amborella trichopoda HOM05D007179 ORTHO05D009124 1.4e-18 97.8 93 58.1
CDE02G2992 Ceratophyllum demersum HOM05D007179 ORTHO05D009124 1.4e-18 97.8 134 46.3
Ca_21187_v3 Cicer arietinum L. HOM05D000001 ORTHO05D009942 1.4e-18 97.8 87 59.8
Actinidia24777 Actinidia chinensis HOM05D007179 ORTHO05D009124 1.8e-18 97.4 70 70.0
FAN17G2417 Fragaria x ananassa HOM05D007179 ORTHO05D009124 2.4e-18 97.1 71 69.0
CDE05G2983 Ceratophyllum demersum HOM05D007179 ORTHO05D009124 1.2e-17 94.7 112 48.2
Hund26395 Selenicereus undatus HOM05D007179 ORTHO05D009124 1.6e-17 94.4 97 55.7
HPP92_018535 Vanilla planifolia HOM05D007179 ORTHO05D009124 3.5e-17 93.2 71 60.6
Nitab4.5_0002004g0010 Nicotiana tabacum HOM05D007179 ORTHO05D009124 1.0e-16 91.7 71 67.6
Mapoly0124s0027 Marchantia polymorpha HOM05D007179 ORTHO05D009124 1.3e-16 91.3 97 51.5
Pp3c12_25950 Physcomitrium patens HOM05D007179 ORTHO05D009124 6.6e-16 89.0 104 44.2
Zm00001eb246810 Zea mays HOM05D007179 ORTHO05D009124 1.6e-14 84.3 69 62.3
Medtr4g129300 Medicago truncatula HOM05D007179 ORTHO05D009124 4.7e-14 82.8 63 65.1
SMO358G0032 Selaginella moellendorffii HOM05D007179 ORTHO05D009124 3.1e-13 80.1 87 50.6
SGA_v2.0_scaffold325G48698 Striga asiatica HOM05D007179 ORTHO05D009124 1.2e-12 78.2 75 56.0
AagrBONN_evm.TU.Sc2ySwM_362.2423 Anthoceros agrestis HOM05D007179 ORTHO05D009124 1.5e-12 77.8 97 43.3
AL1G31260 Arabidopsis lyrata HOM05D005733 ORTHO05D007442 5.8e-12 75.9 84 53.6
AL7G30680 Arabidopsis lyrata HOM05D005733 ORTHO05D007442 5.8e-12 75.9 84 53.6
AL6G37990 Arabidopsis lyrata HOM05D005733 ORTHO05D007442 7.5e-12 75.5 84 53.6
AL3G40460 Arabidopsis lyrata HOM05D005733 ORTHO05D007442 2.9e-11 73.6 84 52.4
Haze_22156 Corylus avellana HOM05D007179 ORTHO05D009124 1.1e-10 71.6 88 53.4
BcaC06g32650 Brassica carinata HOM05D005733 ORTHO05D007442 3.5e-09 66.6 87 47.1
Haze_22155 Corylus avellana HOM05D007179 ORTHO05D009124 1.0e-08 65.1 44 65.9
C02p34360 Brassica napus HOM05D005733 ORTHO05D007442 1.3e-08 64.7 156 34.6
Thhalv10025984m.g Eutrema salsugineum HOM05D005733 ORTHO05D007442 1.3e-08 64.7 87 46.0
A03p57670 Brassica napus HOM05D005733 ORTHO05D007442 3.9e-08 63.2 87 46.0
BraA03t14833Z Brassica rapa HOM05D005733 ORTHO05D007442 3.9e-08 63.2 87 46.0
Nn4g23704 Nelumbo nucifera HOM05D005733 ORTHO05D007442 1.1e-07 61.6 73 50.7
C07p55880 Brassica napus HOM05D005733 ORTHO05D007442 1.5e-07 61.2 87 44.8
Sp7g25980 Schrenkiella parvula HOM05D005733 ORTHO05D007442 1.5e-07 61.2 87 44.8
BolC2t09466H Brassica oleracea HOM05D005733 ORTHO05D007442 1.9e-07 60.8 140 35.0
Aa31LG7G2230 Aethionema arabicum HOM05D005733 ORTHO05D007442 7.3e-07 58.9 33 78.8
Aa31sc193G30 Aethionema arabicum HOM05D005733 ORTHO05D007442 7.3e-07 58.9 33 78.8
Dinv42771 Davidia involucrata HOM05D007179 ORTHO05D009124 9.5e-07 58.5 85 48.2
C01p24460 Brassica napus HOM05D005733 ORTHO05D007442 1.2e-06 58.2 33 81.8
Carub.0007s1276 Capsella rubella HOM05D005733 ORTHO05D007442 1.2e-06 58.2 91 39.6
AL7G24580 Arabidopsis lyrata HOM05D005733 ORTHO05D007442 1.6e-06 57.8 33 78.8
AT4G28030 Arabidopsis thaliana HOM05D005733 ORTHO05D007442 1.6e-06 57.8 33 78.8
CARHR235730 Cardamine hirsuta HOM05D005733 ORTHO05D007442 1.6e-06 57.8 87 42.5
Cpa.g.sc75.16 Carica papaya HOM05D005733 ORTHO05D007442 3.6e-06 56.6 33 75.8
TWI63G0727 Tripterygium wilfordii HOM05D005733 ORTHO05D007442 3.6e-06 56.6 33 78.8
TPR.G5298 Trifolium pratense HOM05D005733 ORTHO05D007442 4.7e-06 56.2 50 60.0
Medtr4g129490 Medicago truncatula HOM05D005733 ORTHO05D007442 6.2e-06 55.8 33 75.8


User provided reference genes

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