Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung01586 Brassica carinata HOM05D004838 ORTHO05D005373 1.1e-43 179.5 88 100.0
BcaC09g50503 Brassica carinata HOM05D004838 ORTHO05D005373 3.7e-34 147.9 88 84.1
A01p19650 Brassica napus HOM05D004838 ORTHO05D005373 3.7e-34 147.9 88 84.1
C01p24680 Brassica napus HOM05D004838 ORTHO05D005373 3.7e-34 147.9 88 84.1
BolC1t02417H Brassica oleracea HOM05D004838 ORTHO05D005373 3.7e-34 147.9 88 84.1
BraA01t01898Z Brassica rapa HOM05D004838 ORTHO05D005373 3.7e-34 147.9 88 84.1
BcaC07g38318 Brassica carinata HOM05D004838 ORTHO05D005373 9.3e-30 133.3 88 76.1
BolC8t48742H Brassica oleracea HOM05D004838 ORTHO05D005373 9.3e-30 133.3 88 76.1
BcaB03g12560 Brassica carinata HOM05D004838 ORTHO05D005373 2.7e-29 131.7 88 75.0
Sp7g26200 Schrenkiella parvula HOM05D004838 ORTHO05D005373 3.5e-29 131.3 88 77.3
C07p56050 Brassica napus HOM05D004838 ORTHO05D005373 7.9e-29 130.2 88 75.0
BolC7t46082H Brassica oleracea HOM05D004838 ORTHO05D005373 7.9e-29 130.2 88 75.0
A08p20180 Brassica napus HOM05D004838 ORTHO05D005373 1.0e-28 129.8 88 72.7
BraA08t33978Z Brassica rapa HOM05D004838 ORTHO05D005373 1.3e-28 129.4 88 72.7
AL7G24360 Arabidopsis lyrata HOM05D004838 ORTHO05D005373 3.0e-28 128.3 88 75.0
AT4G28240 Arabidopsis thaliana HOM05D004838 ORTHO05D005373 3.0e-28 128.3 88 75.0
Thhalv10026689m.g Eutrema salsugineum HOM05D004838 ORTHO05D005373 3.9e-28 127.9 88 75.0
A03p57930 Brassica napus HOM05D004838 ORTHO05D005373 5.6e-27 124.0 90 73.3
Carub.0007s1252 Capsella rubella HOM05D004838 ORTHO05D005373 4.8e-26 120.9 88 67.0
CARHR235950 Cardamine hirsuta HOM05D004838 ORTHO05D005373 4.8e-26 120.9 88 71.6
BraA03t14857Z Brassica rapa HOM05D004838 ORTHO05D005373 6.9e-25 117.1 92 68.5
THA.LOC104804066 Tarenaya hassleriana HOM05D004838 ORTHO05D005373 4.8e-18 94.4 88 56.8
Hma1.2p1_0662F.1_g198280 Hydrangea macrophylla HOM05D004838 ORTHO05D005373 2.5e-14 82.0 96 46.9
Ciclev10017352m.g Citrus clementina HOM05D004838 ORTHO05D005373 3.6e-13 78.2 90 47.8
Nitab4.5_0010094g0010 Nicotiana tabacum HOM05D004838 ORTHO05D005373 2.3e-12 75.5 96 42.7
Phvul.005G107800 Phaseolus vulgaris HOM05D004838 ORTHO05D005373 2.3e-12 75.5 98 46.9
Glyma.12G201000 Glycine max HOM05D004838 ORTHO05D005373 3.0e-12 75.1 98 46.9
Atru.chr6.3079 Acer truncatum HOM05D004838 ORTHO05D005373 3.9e-12 74.7 93 48.4
Nitab4.5_0002791g0020 Nicotiana tabacum HOM05D004838 ORTHO05D005373 3.9e-12 74.7 96 42.7
Glyma.13G301200 Glycine max HOM05D004838 ORTHO05D005373 5.1e-12 74.3 102 45.1
Lj3g0009480 Lotus japonicus HOM05D004838 ORTHO05D005373 6.7e-12 73.9 91 42.9
Ca_01537_v3 Cicer arietinum L. HOM05D004838 ORTHO05D005373 8.8e-12 73.6 92 47.8
Eucgr.K00912 Eucalyptus grandis HOM05D004838 ORTHO05D005373 8.8e-12 73.6 103 40.8
Cfa014541 Carpinus fangiana HOM05D004838 ORTHO05D005373 2.0e-11 72.4 97 43.3
Haze_13083 Corylus avellana HOM05D004838 ORTHO05D005373 4.3e-11 71.2 97 42.3
Lalb_Chr14g0366611 Lupinus albus HOM05D004838 ORTHO05D005373 5.7e-11 70.9 93 43.0
Medtr2g090020 Medicago truncatula HOM05D004838 ORTHO05D005373 5.7e-11 70.9 93 45.2
Prupe.3G230300 Prunus persica HOM05D004838 ORTHO05D005373 9.7e-11 70.1 95 47.4
MELO3C018765.2 Cucumis melo HOM05D004838 ORTHO05D005373 1.7e-10 69.3 97 48.5
CsaV3_7G004130 Cucumis sativus L. HOM05D004838 ORTHO05D005373 2.2e-10 68.9 96 47.9
Rhsim06G0152400 Rhododendron simsii HOM05D004838 ORTHO05D005373 2.2e-10 68.9 92 42.4
CiPaw.04G122600 Carya illinoinensis HOM05D004838 ORTHO05D005373 2.8e-10 68.6 98 42.9
ClCG02G001310 Citrullus lanatus HOM05D004838 ORTHO05D005373 2.8e-10 68.6 97 47.4
MD17G1084900 Malus domestica HOM05D004838 ORTHO05D005373 2.8e-10 68.6 97 45.4
Manes.13G151900 Manihot esculenta HOM05D004838 ORTHO05D005373 3.7e-10 68.2 97 44.3
Psat5g269520 Pisum sativum HOM05D004838 ORTHO05D005373 3.7e-10 68.2 93 46.2
Manes.12G082700 Manihot esculenta HOM05D004838 ORTHO05D005373 4.8e-10 67.8 93 41.9
CiPaw.03G169600 Carya illinoinensis HOM05D004838 ORTHO05D005373 8.2e-10 67.0 97 42.3
Sed0001014 Sechium edule HOM05D004838 ORTHO05D005373 1.4e-09 66.2 101 42.6
Sed0027638 Sechium edule HOM05D004838 ORTHO05D005373 1.8e-09 65.9 94 43.6
Lsat_1_v5_gn_3_40041 Lactuca sativa HOM05D004838 ORTHO05D005373 4.1e-09 64.7 93 39.8
Psat5g269720 Pisum sativum HOM05D004838 ORTHO05D005373 4.1e-09 64.7 95 43.2
Thecc.02G171400 Theobroma cacao HOM05D004838 ORTHO05D005373 4.1e-09 64.7 93 45.2
DCAR_012975 Daucus carota HOM05D004838 ORTHO05D005373 5.3e-09 64.3 94 38.3
MBI18_g19832_MAGBIO Magnolia biondii HOM05D004838 ORTHO05D005373 5.3e-09 64.3 84 41.7
Potri.013G147700 Populus trichocarpa HOM05D004838 ORTHO05D005373 5.3e-09 64.3 97 48.5
SalBow7G0296 Salvia bowleyana HOM05D004838 ORTHO05D005373 5.3e-09 64.3 95 37.9
Cc05_g06190 Coffea canephora HOM05D004838 ORTHO05D005373 6.9e-09 63.9 94 38.3
Hma1.2p1_0565F.1_g179630 Hydrangea macrophylla HOM05D004838 ORTHO05D005373 6.9e-09 63.9 108 38.0
Psat5g269560 Pisum sativum HOM05D004838 ORTHO05D005373 6.9e-09 63.9 94 41.5
PGSC0003DMG400018373 Solanum tuberosum HOM05D004838 ORTHO05D005373 6.9e-09 63.9 93 36.6
Psat5g269640 Pisum sativum HOM05D004838 ORTHO05D005373 9.1e-09 63.5 98 38.8
Nn1g06781 Nelumbo nucifera HOM05D004838 ORTHO05D005373 2.0e-08 62.4 93 40.9
Solyc07g054730.1 Solanum lycopersicum HOM05D004838 ORTHO05D005373 2.0e-08 62.4 93 35.5
Sopen07g028660 Solanum pennellii HOM05D004838 ORTHO05D005373 2.0e-08 62.4 93 35.5
CSS0009105 Camellia sinensis var. sinensis HOM05D004838 ORTHO05D005373 2.6e-08 62.0 96 36.5
Medtr2g090010 Medicago truncatula HOM05D004838 ORTHO05D005373 2.6e-08 62.0 93 41.9
Cpa.g.sc34.87 Carica papaya HOM05D004838 ORTHO05D005373 3.4e-08 61.6 90 43.3
Gohir.D01G015300 Gossypium hirsutum HOM05D004838 ORTHO05D005373 3.4e-08 61.6 93 40.9
Migut.H01017 Erythranthe guttata HOM05D004838 ORTHO05D005373 4.5e-08 61.2 88 36.4
Gorai.002G017000 Gossypium raimondii HOM05D004838 ORTHO05D005373 5.9e-08 60.8 98 39.8
COL.COLO4_13681 Corchorus olitorius HOM05D004838 ORTHO05D005373 7.7e-08 60.5 92 44.6
Lsat_1_v5_gn_3_40321 Lactuca sativa HOM05D004838 ORTHO05D005373 1.0e-07 60.1 89 40.4
unitig_699.g19386 Utricularia gibba HOM05D004838 ORTHO05D005373 1.0e-07 60.1 94 41.5
Lsat_1_v5_gn_3_40341 Lactuca sativa HOM05D004838 ORTHO05D005373 1.3e-07 59.7 89 40.4
Gohir.A01G015300 Gossypium hirsutum HOM05D004838 ORTHO05D005373 1.7e-07 59.3 98 38.8
Medtr2g090015 Medicago truncatula HOM05D004838 ORTHO05D005373 1.7e-07 59.3 92 38.0
MBI18_g27682_MAGBIO Magnolia biondii HOM05D004838 ORTHO05D005373 2.2e-07 58.9 84 40.5
Actinidia09904 Actinidia chinensis HOM05D004838 ORTHO05D005373 3.8e-07 58.2 93 39.8
RcHm_v2.0_Chr2g0161551 Rosa chinensis HOM05D004838 ORTHO05D005373 5.0e-07 57.8 92 38.0
Migut.M00337 Erythranthe guttata HOM05D004838 ORTHO05D005373 8.5e-07 57.0 92 34.8
Lsat_1_v5_gn_3_40080 Lactuca sativa HOM05D004838 ORTHO05D005373 8.5e-07 57.0 92 37.0
Rhsim04G0062900 Rhododendron simsii HOM05D000831 ORTHO05D005373 8.5e-07 57.0 83 42.2
ECA246G4438 Erigeron canadensis HOM05D004838 ORTHO05D005373 1.9e-06 55.8 89 36.0
Lsat_1_v5_gn_3_40461 Lactuca sativa HOM05D004838 ORTHO05D005373 2.5e-06 55.5 89 41.6
Nn2g11248 Nelumbo nucifera HOM05D004838 ORTHO05D005373 2.5e-06 55.5 88 37.5
TPR.G27093 Trifolium pratense HOM05D004838 ORTHO05D005373 2.5e-06 55.5 91 37.4
FAN02G3359 Fragaria x ananassa HOM05D004838 ORTHO05D005373 3.2e-06 55.1 95 42.1
TWI36G0547 Tripterygium wilfordii HOM05D004838 ORTHO05D005373 3.2e-06 55.1 94 39.4
Haze_13080 Corylus avellana HOM05D004838 ORTHO05D005373 5.5e-06 54.3 89 39.3
FAN05G2643 Fragaria x ananassa HOM05D004838 ORTHO05D005373 5.5e-06 54.3 95 42.1
Sabra19G0117300 Salix brachista HOM05D004838 ORTHO05D005373 5.5e-06 54.3 97 41.2
Sabra19G0136400 Salix brachista HOM05D004838 ORTHO05D005373 5.5e-06 54.3 97 41.2
Sed0022545 Sechium edule HOM05D004838 ORTHO05D005373 7.2e-06 53.9 96 37.5
unitig_27.g24815 Utricularia gibba HOM05D004838 ORTHO05D005373 7.2e-06 53.9 93 36.6
MD09G1096600 Malus domestica HOM05D004838 ORTHO05D005373 9.4e-06 53.5 89 43.8


User provided reference genes

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