Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung01577 Brassica carinata HOM05D004801 ORTHO05D005747 6.9e-102 374.0 193 100.0
BraA01t01904Z Brassica rapa HOM05D004801 ORTHO05D005747 1.2e-77 293.5 186 83.3
BolC1t02426H Brassica oleracea HOM05D004801 ORTHO05D005747 1.5e-77 293.1 187 83.4
C01p24790 Brassica napus HOM05D004801 ORTHO05D005747 5.9e-77 291.2 187 82.9
BcaC09g50492 Brassica carinata HOM05D004801 ORTHO05D005747 2.5e-75 285.8 186 82.8
BraA08t33972Z Brassica rapa HOM05D004801 ORTHO05D005747 2.5e-72 275.8 206 76.2
Sp7g26270 Schrenkiella parvula HOM05D004801 ORTHO05D005747 5.7e-72 274.6 204 75.5
A08p20130 Brassica napus HOM05D004801 ORTHO05D005747 2.2e-71 272.7 205 76.6
BolC8t48753H Brassica oleracea HOM05D004801 ORTHO05D005747 2.0e-69 266.2 206 74.3
BcaC07g38324 Brassica carinata HOM05D004801 ORTHO05D005747 1.4e-67 260.0 207 73.4
C08p10790 Brassica napus HOM05D004801 ORTHO05D005747 1.4e-67 260.0 207 73.4
BcaB03g12566 Brassica carinata HOM05D004801 ORTHO05D005747 3.6e-66 255.4 208 70.7
AT4G28310 Arabidopsis thaliana HOM05D004801 ORTHO05D005747 6.1e-66 254.6 201 70.1
Thhalv10027270m.g Eutrema salsugineum HOM05D004801 ORTHO05D005747 7.9e-66 254.2 203 69.0
BcaNung01357 Brassica carinata HOM05D004801 ORTHO05D005747 2.0e-64 249.6 184 77.2
CARHR236030 Cardamine hirsuta HOM05D004801 ORTHO05D005747 3.1e-62 242.3 204 66.2
Aa31LG2G22170 Aethionema arabicum HOM05D004801 ORTHO05D005747 2.0e-61 239.6 198 65.7
Aa31LG10G480 Aethionema arabicum HOM05D004801 ORTHO05D005747 7.7e-61 237.7 195 65.1
AL7G24290 Arabidopsis lyrata HOM05D004801 ORTHO05D005747 1.0e-57 227.3 207 62.3
BcaC06g32627 Brassica carinata HOM05D004801 ORTHO05D005747 1.7e-55 219.9 192 68.8
BcaC06g32628 Brassica carinata HOM05D004801 ORTHO05D005747 1.7e-55 219.9 192 68.8
THA.LOC104824700 Tarenaya hassleriana HOM05D004801 ORTHO05D005747 1.7e-55 219.9 200 61.0
A03p58010 Brassica napus HOM05D004801 ORTHO05D005747 4.1e-54 215.3 193 66.3
BraA03t14864Z Brassica rapa HOM05D004801 ORTHO05D005747 4.1e-54 215.3 193 66.3
Carub.0007s1244 Capsella rubella HOM05D004801 ORTHO05D005747 6.5e-52 208.0 203 60.6
C07p56130 Brassica napus HOM05D004801 ORTHO05D005747 8.5e-52 207.6 194 65.5
BolC7t46088H Brassica oleracea HOM05D004801 ORTHO05D005747 3.6e-50 202.2 173 69.9
Cpa.g.sc34.170 Carica papaya HOM05D004801 ORTHO05D005747 3.0e-41 172.6 197 50.3
Gorai.005G201200 Gossypium raimondii HOM05D004801 ORTHO05D005747 1.9e-35 153.3 225 42.7
Duzib248G0607 Durio zibethinus HOM05D004801 ORTHO05D005747 7.2e-35 151.4 218 45.0
Thecc.02G180400 Theobroma cacao HOM05D004801 ORTHO05D005747 7.2e-35 151.4 230 44.8
Sopen10g004180 Solanum pennellii HOM05D004801 ORTHO05D005747 4.7e-34 148.7 208 46.2
Gohir.A03G156300 Gossypium hirsutum HOM05D004801 ORTHO05D005747 6.1e-34 148.3 226 42.5
ClCG00G003550 Citrullus lanatus HOM05D004801 ORTHO05D005747 2.3e-33 146.4 234 44.4
ClCG07G002870 Citrullus lanatus HOM05D004801 ORTHO05D005747 2.3e-33 146.4 234 44.4
Lalb_Chr24g0399901 Lupinus albus HOM05D004801 ORTHO05D005747 5.2e-33 145.2 161 50.3
RcHm_v2.0_Chr2g0126621 Rosa chinensis HOM05D004801 ORTHO05D005747 6.8e-33 144.8 203 45.3
CsaV3_7G004470 Cucumis sativus L. HOM05D004801 ORTHO05D005747 1.2e-32 144.1 238 43.7
Solyc10g008320.1 Solanum lycopersicum HOM05D004801 ORTHO05D005747 1.2e-32 144.1 205 46.3
COL.COLO4_30200 Corchorus olitorius HOM05D004801 ORTHO05D005747 2.0e-32 143.3 226 45.6
MELO3C018732.2 Cucumis melo HOM05D004801 ORTHO05D005747 2.0e-32 143.3 200 45.0
FvH4_6g26250 Fragaria vesca HOM05D004801 ORTHO05D005747 2.6e-32 142.9 188 46.3
MD17G1239900 Malus domestica HOM05D004801 ORTHO05D005747 5.7e-32 141.7 246 39.8
Nitab4.5_0014741g0010 Nicotiana tabacum HOM05D004801 ORTHO05D005747 5.7e-32 141.7 208 45.2
Sed0013547 Sechium edule HOM05D004801 ORTHO05D005747 1.7e-31 140.2 219 45.2
VMungo0464G0320 Vigna mungo HOM05D004801 ORTHO05D005747 2.8e-31 139.4 199 43.2
Duzib132G1264 Durio zibethinus HOM05D004801 ORTHO05D005747 4.9e-31 138.7 226 41.6
Glyma.13G296700 Glycine max HOM05D004801 ORTHO05D005747 1.4e-30 137.1 213 42.7
Manes.13G146300 Manihot esculenta HOM05D004801 ORTHO05D005747 1.4e-30 137.1 165 46.1
PGSC0003DMG400013144 Solanum tuberosum HOM05D004801 ORTHO05D005747 1.4e-30 137.1 218 44.5
Lj3g0028176 Lotus japonicus HOM05D004801 ORTHO05D005747 1.8e-30 136.7 219 42.0
Glyma.12G204500 Glycine max HOM05D004801 ORTHO05D005747 2.4e-30 136.3 198 44.4
FAN02G2956 Fragaria x ananassa HOM05D004801 ORTHO05D005747 3.2e-30 136.0 174 45.4
Atru.chr6.2990 Acer truncatum HOM05D004801 ORTHO05D005747 4.1e-30 135.6 206 42.7
Ca_01496_v3 Cicer arietinum L. HOM05D004801 ORTHO05D005747 4.1e-30 135.6 181 43.6
Nitab4.5_0000638g0250 Nicotiana tabacum HOM05D004801 ORTHO05D005747 4.1e-30 135.6 201 44.3
Ah.08g215280 Amaranthus hybridus HOM05D004801 ORTHO05D005747 5.4e-30 135.2 175 46.3
Peaxi162Scf00132g00008 Petunia axillaris HOM05D004801 ORTHO05D005747 1.2e-29 134.0 178 49.4
unitig_46.g18595 Utricularia gibba HOM05D004801 ORTHO05D005747 1.6e-29 133.7 203 41.4
Prupe.3G132500 Prunus persica HOM05D004801 ORTHO05D005747 2.7e-29 132.9 217 39.6
TAR626G1782 Trochodendron aralioides HOM05D004801 ORTHO05D005747 2.7e-29 132.9 210 41.4
Glyma.12G204600 Glycine max HOM05D004801 ORTHO05D005747 3.5e-29 132.5 221 40.7
MSTRG.14326 Avicennia marina HOM05D004801 ORTHO05D005747 1.3e-28 130.6 199 42.2
DCAR_013013 Daucus carota HOM05D004801 ORTHO05D005747 1.7e-28 130.2 204 42.6
Lalb_Chr14g0366971 Lupinus albus HOM05D004801 ORTHO05D005747 2.3e-28 129.8 236 37.7
Phvul.004G108200 Phaseolus vulgaris HOM05D004801 ORTHO05D005747 2.9e-28 129.4 214 41.6
SGA_v2.0_scaffold70G23526 Striga asiatica HOM05D004801 ORTHO05D005747 2.9e-28 129.4 219 42.0
ECA234G0944 Erigeron canadensis HOM05D004801 ORTHO05D005747 3.9e-28 129.0 187 44.4
Phvul.004G108100 Phaseolus vulgaris HOM05D004801 ORTHO05D005747 3.9e-28 129.0 217 39.6
Sc21g0002890 Simmondsia chinensis HOM05D004801 ORTHO05D005747 8.6e-28 127.9 161 45.3
TPR.G6396 Trifolium pratense HOM05D004801 ORTHO05D005747 1.1e-27 127.5 188 42.0
Peaxi162Scf00059g00194 Petunia axillaris HOM05D004801 ORTHO05D005747 1.9e-27 126.7 214 42.1
PGSC0003DMG400018341 Solanum tuberosum HOM05D004801 ORTHO05D005747 1.9e-27 126.7 192 45.3
Oeu019133.1 Olea europaea HOM05D004801 ORTHO05D005747 2.5e-27 126.3 228 41.2
Sopen07g027930 Solanum pennellii HOM05D004801 ORTHO05D005747 4.3e-27 125.6 187 43.9
CAN.G578.5 Capsicum annuum HOM05D004801 ORTHO05D005747 5.6e-27 125.2 116 53.4
Cc05_g07190 Coffea canephora HOM05D004801 ORTHO05D005747 1.2e-26 124.0 214 39.3
Nitab4.5_0011784g0010 Nicotiana tabacum HOM05D004801 ORTHO05D005747 1.2e-26 124.0 213 41.3
unitig_37.g12306 Utricularia gibba HOM05D004801 ORTHO05D005747 2.1e-26 123.2 157 43.9
AT1G52270 Arabidopsis thaliana HOM05D004801 ORTHO05D005747 3.6e-26 122.5 168 48.2
Rhsim06G0141800 Rhododendron simsii HOM05D004801 ORTHO05D005747 3.6e-26 122.5 159 44.7
Sed0002865 Sechium edule HOM05D004801 ORTHO05D005747 3.6e-26 122.5 228 38.6
Lsat_1_v5_gn_8_135921 Lactuca sativa HOM05D004801 ORTHO05D005747 8.0e-26 121.3 232 37.1
SalBow1G6004 Salvia bowleyana HOM05D004801 ORTHO05D005747 1.0e-25 120.9 138 48.6
HPP92_008364 Vanilla planifolia HOM05D004801 ORTHO05D005747 1.0e-25 120.9 190 42.6
AUR62040063 Chenopodium quinoa HOM05D004801 ORTHO05D005747 1.8e-25 120.2 97 59.8
CiPaw.03G177800 Carya illinoinensis HOM05D004801 ORTHO05D005747 2.3e-25 119.8 156 42.3
HanXRQChr17g0559281 Helianthus annuus HOM05D004801 ORTHO05D005747 3.1e-25 119.4 233 38.2
TWI36G1772 Tripterygium wilfordii HOM05D004801 ORTHO05D005747 4.0e-25 119.0 230 39.6
vmacro12308 Vaccinium macrocarpon HOM05D004801 ORTHO05D005747 6.8e-25 118.2 193 40.9
arahy.Tifrunner.gnm1.ann1.G6M6JD Arachis hypogaea HOM05D004801 ORTHO05D005747 8.9e-25 117.9 206 36.4
arahy.Tifrunner.gnm1.ann1.KJ31KE Arachis hypogaea HOM05D004801 ORTHO05D005747 8.9e-25 117.9 206 36.4
MSTRG.12824 Avicennia marina HOM05D004801 ORTHO05D005747 8.9e-25 117.9 150 43.3
Solyc07g053950.1 Solanum lycopersicum HOM05D004801 ORTHO05D005747 1.2e-24 117.5 187 42.8
VMungo0464G1438 Vigna mungo HOM05D004801 ORTHO05D005747 1.2e-24 117.5 218 37.6
Aqoxy4G01981 Aquilegia oxysepala HOM05D004801 ORTHO05D005747 2.0e-24 116.7 83 63.9
EL10Ac9g20770 Beta vulgaris HOM05D004801 ORTHO05D005747 2.6e-24 116.3 116 51.7
A01p19730 Brassica napus HOM05D004801 ORTHO05D005747 3.4e-24 115.9 86 79.1
Gohir.D02G179400 Gossypium hirsutum HOM05D004801 ORTHO05D005747 3.4e-24 115.9 227 36.6
SalBow1G1046 Salvia bowleyana HOM05D004801 ORTHO05D005747 3.4e-24 115.9 138 47.8
AUR62022461 Chenopodium quinoa HOM05D004801 ORTHO05D005747 4.4e-24 115.5 153 45.8
GSVIVG01020552001 Vitis vinifera HOM05D004801 ORTHO05D005747 4.4e-24 115.5 90 60.0
Medtr2g090385 Medicago truncatula HOM05D004801 ORTHO05D005747 9.8e-24 114.4 232 37.9
Actinidia11029 Actinidia chinensis HOM05D004801 ORTHO05D005747 1.7e-23 113.6 209 38.3
Migut.M00296 Erythranthe guttata HOM05D004801 ORTHO05D005747 1.7e-23 113.6 89 60.7
Nitab4.5_0000585g0130 Nicotiana tabacum HOM05D004801 ORTHO05D005747 3.7e-23 112.5 209 38.8
QL08p038965 Quercus lobata HOM05D004801 ORTHO05D005747 3.7e-23 112.5 227 37.0
Gohir.A04G103500 Gossypium hirsutum HOM05D004801 ORTHO05D005747 4.9e-23 112.1 77 64.9
SHI10398 Sapria himalayana HOM05D004801 ORTHO05D005747 4.9e-23 112.1 159 42.8
Ciclev10016785m.g Citrus clementina HOM05D004801 ORTHO05D005747 1.1e-22 110.9 189 39.7
FAN09G3815 Fragaria x ananassa HOM05D004801 ORTHO05D005747 1.1e-22 110.9 185 39.5
Lsat_1_v5_gn_8_135941 Lactuca sativa HOM05D004801 ORTHO05D005747 1.4e-22 110.5 207 36.7
SGA_v2.0_scaffold34G13950 Striga asiatica HOM05D004801 ORTHO05D005747 1.4e-22 110.5 220 40.0
Haze_13169 Corylus avellana HOM05D004801 ORTHO05D005747 2.4e-22 109.8 224 36.6
Sabra13G0110300 Salix brachista HOM05D004801 ORTHO05D005747 2.4e-22 109.8 204 37.3
Cfa014619 Carpinus fangiana HOM05D004801 ORTHO05D005747 3.2e-22 109.4 224 37.1
Hma1.2p1_0002F.1_g001940 Hydrangea macrophylla HOM05D004801 ORTHO05D005747 3.2e-22 109.4 202 37.6
PGR042G3918 Punica granatum HOM05D004801 ORTHO05D005747 3.2e-22 109.4 77 66.2
CSS0019593 Camellia sinensis var. sinensis HOM05D004801 ORTHO05D005747 4.1e-22 109.0 208 34.1
Psat5g270840 Pisum sativum HOM05D004801 ORTHO05D005747 5.4e-22 108.6 200 40.0
Glyma.13G296800 Glycine max HOM05D004801 ORTHO05D005747 7.0e-22 108.2 122 50.0
Psat5g272360 Pisum sativum HOM05D004801 ORTHO05D005747 7.0e-22 108.2 228 40.8
Dinv26411 Davidia involucrata HOM05D004801 ORTHO05D005747 1.2e-21 107.5 85 58.8
C03p65310 Brassica napus HOM05D004020 ORTHO05D004735 2.0e-21 106.7 112 58.0
Gorai.012G128300 Gossypium raimondii HOM05D004801 ORTHO05D005747 2.7e-21 106.3 221 36.7
Zm00001eb269130 Zea mays HOM05D004801 ORTHO05D005747 6.0e-21 105.1 85 58.8
Gohir.D04G142900 Gossypium hirsutum HOM05D004801 ORTHO05D005747 7.8e-21 104.8 221 36.2
MBI18_g28947_MAGBIO Magnolia biondii HOM05D004801 ORTHO05D005747 1.3e-20 104.0 184 36.4
PSO170G5688 Papaver somniferum HOM05D004801 ORTHO05D005747 1.3e-20 104.0 106 50.9
Dinv23632 Davidia involucrata HOM05D004801 ORTHO05D005747 2.3e-20 103.2 208 34.6
Eucgr.A01822 Eucalyptus grandis HOM05D004801 ORTHO05D005747 5.0e-20 102.1 78 61.5
Lj1P721T18 Lonicera japonica HOM05D004801 ORTHO05D005747 2.5e-19 99.8 118 44.9
Potri.013G130700 Populus trichocarpa HOM05D004801 ORTHO05D005747 3.3e-19 99.4 222 35.6
BcaC08g44096 Brassica carinata HOM05D004801 ORTHO05D005747 9.5e-19 97.8 91 62.6
Os06g0115700 Oryza sativa ssp. japonica HOM05D004801 ORTHO05D005747 9.5e-19 97.8 72 61.1
BcaC01g02437 Brassica carinata HOM05D004020 ORTHO05D004735 1.6e-18 97.1 91 62.6
ATR0124G030 Amborella trichopoda HOM05D004801 ORTHO05D005747 4.7e-18 95.5 77 57.1
BolC3t18785H Brassica oleracea HOM05D004801 ORTHO05D004735 1.8e-17 93.6 91 61.5
Mapoly0078s0017 Marchantia polymorpha HOM05D004801 ORTHO05D005747 1.8e-17 93.6 101 42.6
PSO357G0555 Papaver somniferum HOM05D004801 ORTHO05D005747 1.8e-17 93.6 245 33.9
C06p19250 Brassica napus HOM05D004020 ORTHO05D004735 5.2e-17 92.0 91 61.5
CSS0042810 Camellia sinensis var. sinensis HOM05D004801 ORTHO05D005747 1.4e-14 84.0 206 33.0
BcaC03g17563 Brassica carinata HOM05D000889 ORTHO05D027509 1.9e-14 83.6 75 64.0
Cpa.g.sc34.169 Carica papaya HOM05D004801 ORTHO05D005747 1.9e-14 83.6 162 37.7
SalBow7G4382 Salvia bowleyana HOM05D004801 ORTHO05D005747 1.9e-14 83.6 183 39.3
SEGI_29524 Sequoiadendron giganteum HOM05D004801 ORTHO05D005747 7.1e-14 81.6 221 29.4
AagrBONN_evm.TU.Sc2ySwM_344.3370 Anthoceros agrestis HOM05D004801 ORTHO05D005747 4.6e-13 79.0 93 45.2
BolC2t11588H Brassica oleracea HOM05D004801 ORTHO05D005747 1.0e-12 77.8 82 59.8
Pp3c17_13330 Physcomitrium patens HOM05D004801 ORTHO05D005747 1.3e-12 77.4 76 50.0
Pp3c14_12710 Physcomitrium patens HOM05D004801 ORTHO05D005747 3.0e-12 76.3 87 46.0
SalBow1G0370 Salvia bowleyana HOM05D004801 ORTHO05D005747 1.7e-07 60.5 138 32.6
SalBow7G4186 Salvia bowleyana HOM05D000074 ORTHO05D000220 1.1e-06 57.8 173 28.3


User provided reference genes

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