Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung01521 Brassica carinata HOM05D004975 ORTHO05D005963 1.2e-61 239.6 117 100.0
BcaNung04139 Brassica carinata HOM05D004975 ORTHO05D005963 2.3e-60 235.3 114 100.0
AL7G20600 Arabidopsis lyrata HOM05D004975 ORTHO05D005963 3.6e-37 158.3 140 60.7
Thhalv10026230m.g Eutrema salsugineum HOM05D004975 ORTHO05D005963 1.5e-35 152.9 144 60.4
CARHR239350 Cardamine hirsuta HOM05D004975 ORTHO05D005963 2.6e-35 152.1 115 67.8
Aa31LG2G18860 Aethionema arabicum HOM05D004975 ORTHO05D005963 6.3e-34 147.5 137 56.9
A01p06810 Brassica napus HOM05D004975 ORTHO05D005963 3.1e-33 145.2 143 58.7
BraA01t00633Z Brassica rapa HOM05D004975 ORTHO05D005963 3.1e-33 145.2 143 58.7
BcaB03g12697 Brassica carinata HOM05D004975 ORTHO05D005963 5.4e-33 144.4 146 58.2
BcaC01g01087 Brassica carinata HOM05D004975 ORTHO05D005963 5.4e-33 144.4 146 58.2
C03p87960 Brassica napus HOM05D004975 ORTHO05D005963 5.4e-33 144.4 146 58.2
BolC3t21107H Brassica oleracea HOM05D004975 ORTHO05D005963 5.4e-33 144.4 146 58.2
Sp7g29320 Schrenkiella parvula HOM05D004975 ORTHO05D005963 5.4e-33 144.4 146 58.2
C01p07550 Brassica napus HOM05D004975 ORTHO05D005963 7.0e-33 144.1 143 58.0
BolC1t00736H Brassica oleracea HOM05D004975 ORTHO05D005963 7.0e-33 144.1 143 58.0
BraA08t33823Z Brassica rapa HOM05D004975 ORTHO05D005963 7.0e-33 144.1 146 57.5
Carub.0007s0909 Capsella rubella HOM05D004975 ORTHO05D005963 7.0e-33 144.1 79 84.8
BcaC09g51928 Brassica carinata HOM05D004975 ORTHO05D005963 1.2e-32 143.3 79 84.8
A08p18600 Brassica napus HOM05D004975 ORTHO05D005963 2.0e-32 142.5 146 56.8
BcaNung04586 Brassica carinata HOM05D004975 ORTHO05D005963 2.7e-32 142.1 147 56.5
THA.LOC104803875 Tarenaya hassleriana HOM05D004975 ORTHO05D005963 4.5e-32 141.4 143 55.9
AT4G31460 Arabidopsis thaliana HOM05D004975 ORTHO05D005963 1.0e-31 140.2 115 65.2
Actinidia13302 Actinidia chinensis HOM05D004975 ORTHO05D005963 3.3e-30 135.2 134 57.5
Actinidia13417 Actinidia chinensis HOM05D004975 ORTHO05D005963 4.3e-30 134.8 140 54.3
Gohir.D07G065600 Gossypium hirsutum HOM05D004975 ORTHO05D005963 4.3e-30 134.8 129 57.4
Gorai.001G069100 Gossypium raimondii HOM05D004975 ORTHO05D005963 4.3e-30 134.8 129 57.4
CiPaw.01G062200 Carya illinoinensis HOM05D004975 ORTHO05D005963 1.2e-29 133.3 115 61.7
Sc24g0001980 Simmondsia chinensis HOM05D004975 ORTHO05D005963 1.2e-29 133.3 137 54.7
SGA_v2.0_scaffold229G43318 Striga asiatica HOM05D004975 ORTHO05D005963 1.2e-29 133.3 124 55.6
MSTRG.11721 Avicennia marina HOM05D004975 ORTHO05D005963 1.6e-29 132.9 115 60.9
CSS0002597 Camellia sinensis var. sinensis HOM05D004975 ORTHO05D005963 1.6e-29 132.9 138 54.3
Thecc.09G007400 Theobroma cacao HOM05D004975 ORTHO05D005963 1.6e-29 132.9 115 60.9
CiPaw.08G019900 Carya illinoinensis HOM05D004975 ORTHO05D005963 2.1e-29 132.5 126 59.5
MELO3C013792.2 Cucumis melo HOM05D004975 ORTHO05D005963 2.8e-29 132.1 115 61.7
Ah.06g191340 Amaranthus hybridus HOM05D004975 ORTHO05D005963 3.6e-29 131.7 131 55.7
Cpa.g.sc6.221 Carica papaya HOM05D004975 ORTHO05D005963 3.6e-29 131.7 114 61.4
CsaV3_3G001030 Cucumis sativus L. HOM05D004975 ORTHO05D005963 3.6e-29 131.7 115 61.7
Gohir.A07G060900 Gossypium hirsutum HOM05D004975 ORTHO05D005963 3.6e-29 131.7 129 56.6
PGR044G1665 Punica granatum HOM05D004975 ORTHO05D005963 3.6e-29 131.7 115 61.7
SGA_v2.0_scaffold27G11528 Striga asiatica HOM05D004975 ORTHO05D005963 3.6e-29 131.7 115 58.3
GSVIVG01009932001 Vitis vinifera HOM05D004975 ORTHO05D005963 3.6e-29 131.7 115 60.0
Lj7C709T7 Lonicera japonica HOM05D004975 ORTHO05D005963 4.7e-29 131.3 115 60.0
Nitab4.5_0000250g0160 Nicotiana tabacum HOM05D004975 ORTHO05D005963 4.7e-29 131.3 137 54.7
Nitab4.5_0002393g0070 Nicotiana tabacum HOM05D004975 ORTHO05D005963 6.1e-29 131.0 115 61.7
ClCG10G000990 Citrullus lanatus HOM05D004975 ORTHO05D005963 8.0e-29 130.6 115 60.9
Ciclev10009422m.g Citrus clementina HOM05D004975 ORTHO05D005963 8.0e-29 130.6 115 60.0
Hma1.2p1_0140F.1_g063690 Hydrangea macrophylla HOM05D004975 ORTHO05D005963 8.0e-29 130.6 115 60.0
Cc08_g08560 Coffea canephora HOM05D004975 ORTHO05D005963 1.0e-28 130.2 115 59.1
CAN.G886.9 Capsicum annuum HOM05D004975 ORTHO05D005963 1.4e-28 129.8 134 55.2
Dinv30242 Davidia involucrata HOM05D004975 ORTHO05D005963 1.4e-28 129.8 125 56.8
Duzib168G2230 Durio zibethinus HOM05D004975 ORTHO05D005963 1.4e-28 129.8 115 60.0
Duzib187G1289 Durio zibethinus HOM05D004975 ORTHO05D005963 1.4e-28 129.8 144 51.4
Eucgr.H01931 Eucalyptus grandis HOM05D004975 ORTHO05D005963 1.8e-28 129.4 125 57.6
Peaxi162Scf00105g00510 Petunia axillaris HOM05D004975 ORTHO05D005963 1.8e-28 129.4 115 60.9
QL12p025158 Quercus lobata HOM05D004975 ORTHO05D005963 1.8e-28 129.4 115 59.1
Aqoxy7G00181 Aquilegia oxysepala HOM05D004975 ORTHO05D005963 2.3e-28 129.0 79 75.9
Medtr1g007480 Medicago truncatula HOM05D004975 ORTHO05D005963 2.3e-28 129.0 79 74.7
Phvul.011G072600 Phaseolus vulgaris HOM05D004975 ORTHO05D005963 2.3e-28 129.0 137 51.1
Hund22233 Selenicereus undatus HOM05D004975 ORTHO05D005963 2.3e-28 129.0 115 59.1
unitig_46.g18530 Utricularia gibba HOM05D004975 ORTHO05D005963 2.3e-28 129.0 115 58.3
arahy.Tifrunner.gnm1.ann1.1NF0KF Arachis hypogaea HOM05D004975 ORTHO05D005963 3.0e-28 128.6 114 57.9
arahy.Tifrunner.gnm1.ann1.57HDZK Arachis hypogaea HOM05D004975 ORTHO05D005963 3.0e-28 128.6 114 57.9
arahy.Tifrunner.gnm1.ann1.KS8K1P Arachis hypogaea HOM05D004975 ORTHO05D005963 3.0e-28 128.6 114 57.9
Glyma.12G071700 Glycine max HOM05D004975 ORTHO05D005963 3.0e-28 128.6 114 57.9
Solyc08g065760.3 Solanum lycopersicum HOM05D004975 ORTHO05D005963 3.0e-28 128.6 135 54.8
Sopen10g033590 Solanum pennellii HOM05D004975 ORTHO05D005963 3.0e-28 128.6 135 54.8
PSO063G2087 Papaver somniferum HOM05D004975 ORTHO05D005963 4.0e-28 128.3 98 66.3
PSO170G1562 Papaver somniferum HOM05D004975 ORTHO05D005963 4.0e-28 128.3 98 66.3
Sopen08g019440 Solanum pennellii HOM05D004975 ORTHO05D005963 4.0e-28 128.3 115 60.0
TPR.G24523 Trifolium pratense HOM05D004975 ORTHO05D005963 4.0e-28 128.3 79 75.9
PSO063G4606 Papaver somniferum HOM05D004975 ORTHO05D005963 5.2e-28 127.9 98 66.3
TWI34G1428 Tripterygium wilfordii HOM05D004975 ORTHO05D005963 5.2e-28 127.9 136 55.1
Atru.chr7.2646 Acer truncatum HOM05D004975 ORTHO05D005963 6.8e-28 127.5 133 53.4
Manes.17G086700 Manihot esculenta HOM05D004975 ORTHO05D005963 6.8e-28 127.5 79 74.7
Sed0019969 Sechium edule HOM05D004975 ORTHO05D005963 6.8e-28 127.5 125 52.8
Hund06848 Selenicereus undatus HOM05D004975 ORTHO05D005963 6.8e-28 127.5 115 57.4
PGSC0003DMG400013829 Solanum tuberosum HOM05D004975 ORTHO05D005963 6.8e-28 127.5 135 54.1
Ca_12771_v3 Cicer arietinum L. HOM05D004975 ORTHO05D005963 8.9e-28 127.1 79 74.7
HanXRQChr11g0341541 Helianthus annuus HOM05D004975 ORTHO05D005963 8.9e-28 127.1 115 60.0
TWI63G0658 Tripterygium wilfordii HOM05D004975 ORTHO05D005963 8.9e-28 127.1 115 59.1
TAR625G0147 Trochodendron aralioides HOM05D004975 ORTHO05D005963 8.9e-28 127.1 124 55.6
arahy.Tifrunner.gnm1.ann1.GL41SS Arachis hypogaea HOM05D004975 ORTHO05D005963 1.5e-27 126.3 114 57.0
CANSAT25G3538 Cannabis sativa HOM05D004975 ORTHO05D005963 1.5e-27 126.3 131 54.2
Psat6g036480 Pisum sativum HOM05D004975 ORTHO05D005963 1.5e-27 126.3 114 57.9
Glyma.11G153169 Glycine max HOM05D004975 ORTHO05D005963 2.0e-27 125.9 137 49.6
Rhsim04G0150100 Rhododendron simsii HOM05D004975 ORTHO05D005963 2.0e-27 125.9 79 73.4
vmacro05353 Vaccinium macrocarpon HOM05D004975 ORTHO05D005963 2.0e-27 125.9 79 74.7
Migut.A00251 Erythranthe guttata HOM05D004975 ORTHO05D005963 2.6e-27 125.6 115 56.5
HanXRQChr01g0029381 Helianthus annuus HOM05D004975 ORTHO05D005963 2.6e-27 125.6 115 59.1
MBI16_g41808_MAGBIO Magnolia biondii HOM05D004975 ORTHO05D005963 2.6e-27 125.6 141 53.2
VMungo1127G2243 Vigna mungo HOM05D004975 ORTHO05D005963 2.6e-27 125.6 114 55.3
CANSAT64G0033 Cannabis sativa HOM05D004975 ORTHO05D005963 3.4e-27 125.2 134 53.0
CDE05G0021 Ceratophyllum demersum HOM05D004975 ORTHO05D005963 3.4e-27 125.2 129 53.5
Nn2g12690 Nelumbo nucifera HOM05D004975 ORTHO05D005963 3.4e-27 125.2 112 59.8
Os07g0544900 Oryza sativa ssp. japonica HOM05D004975 ORTHO05D005963 3.4e-27 125.2 113 58.4
EL10Ac4g08846 Beta vulgaris HOM05D004975 ORTHO05D005963 4.4e-27 124.8 140 50.7
COL.COLO4_19031 Corchorus olitorius HOM05D004975 ORTHO05D005963 4.4e-27 124.8 115 57.4
Potri.018G006900 Populus trichocarpa HOM05D004975 ORTHO05D005963 4.4e-27 124.8 115 56.5
TAR383G0773 Trochodendron aralioides HOM05D004975 ORTHO05D005963 4.4e-27 124.8 124 54.8
EL10Ac2g04836 Beta vulgaris HOM05D004975 ORTHO05D005963 5.8e-27 124.4 139 51.1
Lalb_Chr18g0045061 Lupinus albus HOM05D004975 ORTHO05D005963 5.8e-27 124.4 114 55.3
DCAR_007697 Daucus carota HOM05D004975 ORTHO05D005963 7.5e-27 124.0 136 52.2
Lsat_1_v5_gn_1_49060 Lactuca sativa HOM05D004975 ORTHO05D005963 7.5e-27 124.0 135 52.6
Lj3g0015990 Lotus japonicus HOM05D004975 ORTHO05D005963 7.5e-27 124.0 137 49.6
PSO782G1312 Papaver somniferum HOM05D004975 ORTHO05D005963 7.5e-27 124.0 75 77.3
Prupe.1G459900 Prunus persica HOM05D004975 ORTHO05D005963 9.8e-27 123.6 111 58.6
ECA248G0122 Erigeron canadensis HOM05D004975 ORTHO05D005963 1.3e-26 123.2 132 53.0
MD15G1107600 Malus domestica HOM05D004975 ORTHO05D005963 1.3e-26 123.2 113 56.6
TAR383G0873 Trochodendron aralioides HOM05D004975 ORTHO05D005963 1.3e-26 123.2 119 56.3
AUR62027460 Chenopodium quinoa HOM05D004975 ORTHO05D005963 1.7e-26 122.9 75 76.0
Zm00001eb323470 Zea mays HOM05D004975 ORTHO05D005963 2.2e-26 122.5 130 52.3
Ca_29761_v3 Cicer arietinum L. HOM05D004975 ORTHO05D005963 2.9e-26 122.1 77 74.0
ECA248G2823 Erigeron canadensis HOM05D004975 ORTHO05D005963 2.9e-26 122.1 130 52.3
MD08G1128100 Malus domestica HOM05D004975 ORTHO05D005963 2.9e-26 122.1 113 56.6
Zm00001eb106440 Zea mays HOM05D004975 ORTHO05D005963 2.9e-26 122.1 77 71.4
Haze_21744 Corylus avellana HOM05D004975 ORTHO05D005963 4.9e-26 121.3 87 66.7
Lj3g0002799 Lotus japonicus HOM05D004975 ORTHO05D005963 4.9e-26 121.3 137 48.9
RcHm_v2.0_Chr6g0305011 Rosa chinensis HOM05D004975 ORTHO05D005963 4.9e-26 121.3 140 48.6
Sabra18G0014600 Salix brachista HOM05D004975 ORTHO05D005963 4.9e-26 121.3 131 51.1
HPP92_011116 Vanilla planifolia HOM05D004975 ORTHO05D005963 4.9e-26 121.3 130 53.8
FAN06G0478 Fragaria x ananassa HOM05D004975 ORTHO05D005963 6.4e-26 120.9 140 48.6
CDE02G4585 Ceratophyllum demersum HOM05D004975 ORTHO05D005963 8.3e-26 120.6 79 72.2
FvH4_2g36661 Fragaria vesca HOM05D004975 ORTHO05D005963 8.3e-26 120.6 140 47.9
ATR0580G184 Amborella trichopoda HOM05D004975 ORTHO05D005963 1.4e-25 119.8 140 49.3
Cfa013273 Carpinus fangiana HOM05D004975 ORTHO05D005963 1.4e-25 119.8 87 66.7
FvH4_7g03740 Fragaria vesca HOM05D004975 ORTHO05D005963 1.4e-25 119.8 77 72.7
FAN20G1154 Fragaria x ananassa HOM05D007251 ORTHO05D009266 3.2e-25 118.6 140 47.1
Oeu031567.1 Olea europaea HOM05D004975 ORTHO05D005963 1.3e-23 113.2 132 48.5
SHI04272 Sapria himalayana HOM05D004975 ORTHO05D005963 1.3e-23 113.2 120 52.5
Manes.15G137600 Manihot esculenta HOM05D004975 ORTHO05D005963 1.9e-22 109.4 113 52.2
SEGI_29047 Sequoiadendron giganteum HOM05D004975 ORTHO05D005963 5.6e-22 107.8 90 57.8
Solyc10g038060.2 Solanum lycopersicum HOM05D004975 ORTHO05D005963 5.2e-20 101.3 94 57.4
AagrBONN_evm.TU.Sc2ySwM_117.1642 Anthoceros agrestis HOM05D004975 ORTHO05D005963 7.5e-19 97.4 113 45.1
Pp3c2_35700 Physcomitrium patens HOM05D004975 ORTHO05D005963 5.4e-17 91.3 75 57.3
Mapoly0026s0002 Marchantia polymorpha HOM05D004975 ORTHO05D005963 1.6e-16 89.7 99 45.5
HPP92_011121 Vanilla planifolia HOM05D004975 ORTHO05D005963 4.6e-16 88.2 107 49.5
SMO367G1088 Selaginella moellendorffii HOM05D004975 ORTHO05D005963 1.3e-15 86.7 69 56.5
Aqoxy3G03669 Aquilegia oxysepala HOM05D004975 ORTHO05D005963 4.7e-13 78.2 48 72.9
BcaB03g12699 Brassica carinata HOM05D004975 ORTHO05D005963 7.5e-11 70.9 61 62.3
BcaC01g01097 Brassica carinata HOM05D004975 ORTHO05D005963 6.4e-10 67.8 121 39.7
C03p88060 Brassica napus HOM05D004975 ORTHO05D005963 4.1e-09 65.1 34 85.3
PRCOL_00000323 Prasinoderma coloniale HOM05D004975 ORTHO05D005963 5.1e-07 58.2 77 44.2


User provided reference genes

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