Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung01514 Brassica carinata HOM05D007435 ORTHO05D009338 1.8e-67 259.2 137 100.0
C07p58750 Brassica napus HOM05D007435 ORTHO05D009338 1.1e-64 250.0 137 95.6
BolC7t46323H Brassica oleracea HOM05D007435 ORTHO05D009338 1.1e-64 250.0 137 95.6
A03p60860 Brassica napus HOM05D007435 ORTHO05D009338 1.2e-60 236.5 137 92.7
BraA03t15122Z Brassica rapa HOM05D007435 ORTHO05D009338 1.2e-60 236.5 137 92.7
BcaNung04129 Brassica carinata HOM05D007435 ORTHO05D009338 5.6e-58 227.6 134 90.3
Sp7g29390 Schrenkiella parvula HOM05D007435 ORTHO05D009338 4.3e-50 201.4 140 81.4
Thhalv10026511m.g Eutrema salsugineum HOM05D007435 ORTHO05D009338 9.7e-50 200.3 144 77.8
A01p06670 Brassica napus HOM05D005366 ORTHO05D006323 6.9e-48 194.1 136 80.1
BraA01t00625Z Brassica rapa HOM05D005366 ORTHO05D006323 6.9e-48 194.1 136 80.1
CARHR239440 Cardamine hirsuta HOM05D007435 ORTHO05D009338 1.3e-46 189.9 135 77.0
AT4G31560 Arabidopsis thaliana HOM05D007435 ORTHO05D009338 1.7e-46 189.5 139 78.4
AL343U10010 Arabidopsis lyrata HOM05D007435 ORTHO05D009338 3.8e-46 188.3 138 76.1
C01p07440 Brassica napus HOM05D007435 ORTHO05D009338 2.1e-44 182.6 138 76.1
BolC1t00726H Brassica oleracea HOM05D007435 ORTHO05D009338 2.1e-44 182.6 138 76.1
BcaC09g51937 Brassica carinata HOM05D007435 ORTHO05D009338 3.0e-43 178.7 135 75.6
Aa31LG2G18760 Aethionema arabicum HOM05D007435 ORTHO05D009338 6.3e-41 171.0 143 67.1
Carub.0007s0901 Capsella rubella HOM05D007435 ORTHO05D009338 1.2e-39 166.8 141 70.9
THA.LOC104826709 Tarenaya hassleriana HOM05D007435 ORTHO05D009338 1.8e-24 116.3 139 51.8
Thecc.10G004500 Theobroma cacao HOM05D007435 ORTHO05D009338 1.1e-21 107.1 99 55.6
Cpa.g.sc197.17 Carica papaya HOM05D007435 ORTHO05D009338 1.9e-21 106.3 137 46.7
Eucgr.G03266 Eucalyptus grandis HOM05D007435 ORTHO05D009338 1.0e-19 100.5 141 48.2
COL.COLO4_19345 Corchorus olitorius HOM05D007435 ORTHO05D009338 1.8e-19 99.8 96 54.2
Duzib114G0226 Durio zibethinus HOM05D007435 ORTHO05D009338 4.4e-18 95.1 102 52.0
Prupe.2G027100 Prunus persica HOM05D007435 ORTHO05D009338 4.4e-18 95.1 137 43.8
FAN03G1772 Fragaria x ananassa HOM05D007435 ORTHO05D009338 5.7e-18 94.7 145 46.9
TAR065G0004 Trochodendron aralioides HOM05D007435 ORTHO05D009338 5.7e-18 94.7 142 45.8
Manes.11G002100 Manihot esculenta HOM05D007435 ORTHO05D009338 2.8e-17 92.4 97 51.5
Duzib128G0703 Durio zibethinus HOM05D007435 ORTHO05D009338 6.3e-17 91.3 150 40.7
Actinidia02252 Actinidia chinensis HOM05D007435 ORTHO05D009338 8.3e-17 90.9 95 54.7
Gohir.D10G251200 Gossypium hirsutum HOM05D007435 ORTHO05D009338 8.3e-17 90.9 93 54.8
Gorai.011G291600 Gossypium raimondii HOM05D007435 ORTHO05D009338 8.3e-17 90.9 93 54.8
MD07G1027000 Malus domestica HOM05D007435 ORTHO05D009338 1.1e-16 90.5 144 41.7
Gohir.A10G239300 Gossypium hirsutum HOM05D007435 ORTHO05D009338 1.4e-16 90.1 92 53.3
Dinv03572 Davidia involucrata HOM05D007435 ORTHO05D009338 1.8e-16 89.7 93 53.8
Dinv05039 Davidia involucrata HOM05D007435 ORTHO05D009338 1.8e-16 89.7 93 53.8
Dinv32059 Davidia involucrata HOM05D007435 ORTHO05D009338 1.8e-16 89.7 92 52.2
FvH4_7g02100 Fragaria vesca HOM05D007435 ORTHO05D009338 1.8e-16 89.7 144 43.8
TWI63G0886 Tripterygium wilfordii HOM05D007435 ORTHO05D009338 1.8e-16 89.7 143 43.4
MD02G1297000 Malus domestica HOM05D007435 ORTHO05D009338 5.3e-16 88.2 138 44.9
SalBow6G1324 Salvia bowleyana HOM05D007435 ORTHO05D009338 5.3e-16 88.2 91 51.6
Actinidia21528 Actinidia chinensis HOM05D007435 ORTHO05D009338 9.1e-16 87.4 125 45.6
Haze_03106 Corylus avellana HOM05D007435 ORTHO05D009338 9.1e-16 87.4 145 41.4
TAR369G0027 Trochodendron aralioides HOM05D007435 ORTHO05D009338 9.1e-16 87.4 137 43.1
RcHm_v2.0_Chr1g0319401 Rosa chinensis HOM05D007435 ORTHO05D009338 1.2e-15 87.0 144 44.4
CANSAT80G0490 Cannabis sativa HOM05D007435 ORTHO05D009338 2.0e-15 86.3 96 54.2
CiPaw.13G009600 Carya illinoinensis HOM05D007435 ORTHO05D009338 2.0e-15 86.3 155 43.2
Nn7g36439 Nelumbo nucifera HOM05D007435 ORTHO05D009338 2.0e-15 86.3 98 52.0
CSS0019859 Camellia sinensis var. sinensis HOM05D007435 ORTHO05D009338 5.9e-15 84.7 96 46.9
Cfa010840 Carpinus fangiana HOM05D007435 ORTHO05D009338 5.9e-15 84.7 146 40.4
AUR62037244 Chenopodium quinoa HOM05D007435 ORTHO05D009338 5.9e-15 84.7 94 48.9
Lsat_1_v5_gn_1_100400 Lactuca sativa HOM05D007435 ORTHO05D009338 5.9e-15 84.7 114 47.4
Rhsim05G0126700 Rhododendron simsii HOM05D007435 ORTHO05D009338 5.9e-15 84.7 93 50.5
AUR62026808 Chenopodium quinoa HOM05D007435 ORTHO05D009338 1.7e-14 83.2 94 48.9
Lj3g0014273 Lotus japonicus HOM05D007435 ORTHO05D009338 2.9e-14 82.4 103 46.6
SGA_v2.0_scaffold354G49740 Striga asiatica HOM05D007435 ORTHO05D009338 2.9e-14 82.4 137 43.1
DCAR_009211 Daucus carota HOM05D007435 ORTHO05D009338 6.5e-14 81.3 99 46.5
unitig_578.g16053 Utricularia gibba HOM05D007435 ORTHO05D009338 6.5e-14 81.3 121 41.3
Sc10g0004150 Simmondsia chinensis HOM05D007435 ORTHO05D009338 8.5e-14 80.9 145 40.0
Migut.N01821 Erythranthe guttata HOM05D007435 ORTHO05D009338 1.9e-13 79.7 96 44.8
QL04p013057 Quercus lobata HOM05D007435 ORTHO05D009338 1.9e-13 79.7 168 39.9
QL04p012434 Quercus lobata HOM05D007435 ORTHO05D009338 5.5e-13 78.2 169 39.1
ClCG01G007560 Citrullus lanatus HOM05D007435 ORTHO05D009338 1.2e-12 77.0 83 54.2
MELO3C005141.2 Cucumis melo HOM05D007435 ORTHO05D009338 2.1e-12 76.3 83 54.2
Potri.001G022500 Populus trichocarpa HOM05D007435 ORTHO05D009338 2.1e-12 76.3 109 45.0
Ah.10g030920 Amaranthus hybridus HOM05D007435 ORTHO05D009338 2.7e-12 75.9 95 46.3
Nitab4.5_0000316g0230 Nicotiana tabacum HOM05D002000 ORTHO05D002027 2.7e-12 75.9 97 47.4
Solyc01g068190.3 Solanum lycopersicum HOM05D007435 ORTHO05D009338 2.7e-12 75.9 98 43.9
Sopen01g030130 Solanum pennellii HOM05D007435 ORTHO05D009338 2.7e-12 75.9 98 43.9
PGSC0003DMG401006753 Solanum tuberosum HOM05D007435 ORTHO05D009338 4.7e-12 75.1 96 43.8
CsaV3_5G024570 Cucumis sativus L. HOM05D007435 ORTHO05D009338 6.1e-12 74.7 139 40.3
Nitab4.5_0001775g0080 Nicotiana tabacum HOM05D007435 ORTHO05D009338 6.1e-12 74.7 95 47.4
PSO339G5565 Papaver somniferum HOM05D007435 ORTHO05D009338 8.0e-12 74.3 91 45.1
ATR0006G035 Amborella trichopoda HOM05D007435 ORTHO05D009338 2.3e-11 72.8 126 42.1
Peaxi162Scf00087g00129 Petunia axillaris HOM05D007435 ORTHO05D009338 3.0e-11 72.4 84 48.8
ECA248G3437 Erigeron canadensis HOM05D000002 ORTHO05D000001 4.0e-11 72.0 101 43.6
Sed0015818 Sechium edule HOM05D007435 ORTHO05D009338 5.2e-11 71.6 83 49.4
Medtr3g023160 Medicago truncatula HOM05D007435 ORTHO05D009338 1.5e-10 70.1 124 41.1
PGR031G0502 Punica granatum HOM05D007435 ORTHO05D009338 1.5e-10 70.1 123 39.8
Ciclev10032994m.g Citrus clementina HOM05D007435 ORTHO05D009338 2.6e-10 69.3 103 39.8
HanXRQChr01g0020861 Helianthus annuus HOM05D007435 ORTHO05D009338 2.6e-10 69.3 94 43.6
Psat5g213320 Pisum sativum HOM05D007435 ORTHO05D009338 5.7e-10 68.2 95 40.0
MBI13_g04786_MAGBIO Magnolia biondii HOM05D007435 ORTHO05D009338 9.8e-10 67.4 87 46.0
Lalb_Chr25g0282731 Lupinus albus HOM05D007435 ORTHO05D009338 2.2e-09 66.2 105 40.0
CDE08G0963 Ceratophyllum demersum HOM05D000584 ORTHO05D009338 2.8e-09 65.9 85 50.6
Glyma.11G149600 Glycine max HOM05D007435 ORTHO05D009338 2.8e-09 65.9 133 37.6
arahy.Tifrunner.gnm1.ann1.4Y0UDN Arachis hypogaea HOM05D007435 ORTHO05D009338 6.3e-09 64.7 110 39.1
Phvul.005G033400 Phaseolus vulgaris HOM05D007435 ORTHO05D009338 8.3e-09 64.3 124 38.7
BcaB03g12705 Brassica carinata HOM05D007435 ORTHO05D009338 3.1e-08 62.4 43 76.7
Sabra01G0016900 Salix brachista HOM05D007435 ORTHO05D009338 3.1e-08 62.4 51 60.8
CDE06G1029 Ceratophyllum demersum HOM05D007435 ORTHO05D009338 4.1e-08 62.0 85 45.9
Hma1.2p1_0269F.1_g107800 Hydrangea macrophylla HOM05D007435 ORTHO05D009338 4.1e-08 62.0 58 50.0
VMungo1080G0635 Vigna mungo HOM05D007435 ORTHO05D009338 1.2e-07 60.5 97 36.1
Hund13323 Selenicereus undatus HOM05D000185 ORTHO05D000105 2.0e-07 59.7 51 58.8
HPP92_025000 Vanilla planifolia HOM05D007435 ORTHO05D009338 2.0e-07 59.7 109 39.4
Zm00001eb363190 Zea mays HOM05D007435 ORTHO05D009338 2.0e-07 59.7 110 37.3
vmacro19756 Vaccinium macrocarpon HOM05D007435 ORTHO05D009338 3.5e-07 58.9 95 43.2
arahy.Tifrunner.gnm1.ann1.KRJM02 Arachis hypogaea HOM05D007435 ORTHO05D009338 4.5e-07 58.5 102 38.2
Atru.chr11.2511 Acer truncatum HOM05D007435 ORTHO05D009338 5.9e-07 58.2 148 34.5
Aqoxy1G00332 Aquilegia oxysepala HOM05D007435 ORTHO05D009338 5.9e-07 58.2 74 44.6
Ca_27018_v3 Cicer arietinum L. HOM05D007435 ORTHO05D009338 1.7e-06 56.6 91 39.6


User provided reference genes

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