Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung01494 Brassica carinata HOM05D006008 ORTHO05D007334 2.7e-144 516.9 784 100.0
C07p58920 Brassica napus HOM05D006008 ORTHO05D007334 3.2e-113 413.7 781 93.3
BolC7t46339H Brassica oleracea HOM05D006008 ORTHO05D007334 3.2e-113 413.7 781 93.3
A03p61020 Brassica napus HOM05D006008 ORTHO05D007334 3.9e-111 406.8 781 91.9
BraA03t15143Z Brassica rapa HOM05D006008 ORTHO05D007334 7.3e-110 402.5 781 88.9
Carub.0007s0870 Capsella rubella HOM05D006008 ORTHO05D007334 7.9e-96 355.9 792 88.9
AL7G20130 Arabidopsis lyrata HOM05D006008 ORTHO05D007334 8.1e-93 345.9 792 89.1
Thhalv10024264m.g Eutrema salsugineum HOM05D006008 ORTHO05D007334 1.1e-89 335.5 794 89.4
CARHR239780 Cardamine hirsuta HOM05D006008 ORTHO05D007334 5.3e-84 316.6 792 87.4
Sp7g29660 Schrenkiella parvula HOM05D006008 ORTHO05D007334 5.3e-84 316.6 788 88.8
AT4G31850 Arabidopsis thaliana HOM05D006008 ORTHO05D007334 9.0e-84 315.8 790 87.8
A01p06430 Brassica napus HOM05D006008 ORTHO05D007334 3.2e-81 307.4 789 86.2
Aa31LG2G18380 Aethionema arabicum HOM05D006008 ORTHO05D007334 1.6e-77 295.0 792 85.5
C01p07070 Brassica napus HOM05D006008 ORTHO05D007334 6.3e-77 293.1 788 86.9
BraA01t00604Z Brassica rapa HOM05D006008 ORTHO05D007334 1.5e-70 271.9 790 84.2
BcaC09g51977 Brassica carinata HOM05D006008 ORTHO05D007334 3.3e-70 270.8 218 71.6
BolC1t00699H Brassica oleracea HOM05D006008 ORTHO05D007334 9.1e-60 236.1 214 63.6
BcaNung03118 Brassica carinata HOM05D006008 ORTHO05D007334 8.5e-58 229.6 123 87.0
THA.LOC104803618 Tarenaya hassleriana HOM05D006008 ORTHO05D007334 1.9e-57 228.4 786 79.1
Dinv08184 Davidia involucrata HOM05D006008 ORTHO05D007334 1.3e-45 189.1 222 52.3
Manes.08G047700 Manihot esculenta HOM05D006008 ORTHO05D007334 1.1e-44 186.0 225 50.2
Atru.chr7.2558 Acer truncatum HOM05D006008 ORTHO05D007334 3.1e-44 184.5 180 54.4
DCAR_022863 Daucus carota HOM05D006008 ORTHO05D007334 4.1e-44 184.1 221 50.2
MD08G1055800 Malus domestica HOM05D006008 ORTHO05D007334 4.1e-44 184.1 218 48.6
Cfa013044 Carpinus fangiana HOM05D006008 ORTHO05D007334 9.1e-44 183.0 220 48.2
Migut.A00359 Erythranthe guttata HOM05D006008 ORTHO05D007334 2.0e-43 181.8 176 56.8
Cpa.g.sc148.18 Carica papaya HOM05D006008 ORTHO05D007334 7.7e-43 179.9 180 52.8
Duzib187G0883 Durio zibethinus HOM05D006008 ORTHO05D007334 7.7e-43 179.9 169 57.4
Rhsim07G0155900 Rhododendron simsii HOM05D006008 ORTHO05D007334 1.0e-42 179.5 186 54.8
Sabra06G0206900 Salix brachista HOM05D006008 ORTHO05D007334 1.0e-42 179.5 224 49.1
arahy.Tifrunner.gnm1.ann1.6M8E1A Arachis hypogaea HOM05D006008 ORTHO05D007334 2.2e-42 178.3 212 47.2
TWI63G1661 Tripterygium wilfordii HOM05D006008 ORTHO05D007334 2.2e-42 178.3 226 46.0
Haze_21405 Corylus avellana HOM05D006008 ORTHO05D007334 2.9e-42 177.9 213 50.2
Phvul.009G086500 Phaseolus vulgaris HOM05D006008 ORTHO05D007334 2.9e-42 177.9 216 48.1
Actinidia23109 Actinidia chinensis HOM05D006008 ORTHO05D007334 3.8e-42 177.6 221 46.6
Potri.006G264800 Populus trichocarpa HOM05D006008 ORTHO05D007334 5.0e-42 177.2 187 54.0
BcaNung03117 Brassica carinata HOM05D006008 ORTHO05D007334 8.5e-42 176.4 155 67.1
VMungo1309G2388 Vigna mungo HOM05D006008 ORTHO05D007334 1.5e-41 175.6 185 50.3
Hund20025 Selenicereus undatus HOM05D006008 ORTHO05D007334 4.2e-41 174.1 175 52.6
arahy.Tifrunner.gnm1.ann1.83E5X5 Arachis hypogaea HOM05D006008 ORTHO05D007334 5.5e-41 173.7 218 47.7
CSS0033722 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 7.2e-41 173.3 212 50.0
CANSAT21G2303 Cannabis sativa HOM05D006008 ORTHO05D007334 7.2e-41 173.3 203 47.8
Sc09g0010690 Simmondsia chinensis HOM05D006008 ORTHO05D007334 7.2e-41 173.3 178 54.5
Thecc.09G015100 Theobroma cacao HOM05D006008 ORTHO05D007334 7.2e-41 173.3 169 56.2
arahy.Tifrunner.gnm1.ann1.HZWF25 Arachis hypogaea HOM05D006008 ORTHO05D007334 1.6e-40 172.2 185 49.7
Medtr3g105900 Medicago truncatula HOM05D006008 ORTHO05D007334 2.1e-40 171.8 230 43.9
SGA_v2.0_scaffold147G36344 Striga asiatica HOM05D006008 ORTHO05D007334 3.6e-40 171.0 193 50.3
AUR62041936 Chenopodium quinoa HOM05D006008 ORTHO05D007334 4.7e-40 170.6 179 53.6
CANSAT54G1994 Cannabis sativa HOM05D006008 ORTHO05D007334 1.0e-39 169.5 176 50.6
Lj7P735T18 Lonicera japonica HOM05D006008 ORTHO05D007334 1.0e-39 169.5 152 59.2
CANSAT56G1562 Cannabis sativa HOM05D006008 ORTHO05D007334 4.0e-39 167.5 216 44.4
ClCG05G016190 Citrullus lanatus HOM05D006008 ORTHO05D007334 4.0e-39 167.5 177 51.4
Aqoxy7G02519 Aquilegia oxysepala HOM05D006008 ORTHO05D007334 5.2e-39 167.2 220 45.9
MELO3C032315.2 Cucumis melo HOM05D006008 ORTHO05D007334 5.2e-39 167.2 178 52.2
Prupe.1G394600 Prunus persica HOM05D006008 ORTHO05D007334 6.8e-39 166.8 206 47.6
QL02p018792 Quercus lobata HOM05D006008 ORTHO05D007334 6.8e-39 166.8 154 57.8
arahy.Tifrunner.gnm1.ann1.E59C1E Arachis hypogaea HOM05D006008 ORTHO05D007334 8.8e-39 166.4 185 50.3
PSO384G1678 Papaver somniferum HOM05D006008 ORTHO05D007334 8.8e-39 166.4 173 53.2
TAR362G1189 Trochodendron aralioides HOM05D006008 ORTHO05D007334 8.8e-39 166.4 178 51.1
Lsat_1_v5_gn_2_36140 Lactuca sativa HOM05D006008 ORTHO05D007334 1.2e-38 166.0 172 54.1
RcHm_v2.0_Chr6g0299351 Rosa chinensis HOM05D006008 ORTHO05D007334 1.2e-38 166.0 182 46.7
Gorai.009G063400 Gossypium raimondii HOM05D006008 ORTHO05D007334 1.5e-38 165.6 169 52.1
ECA234G3283 Erigeron canadensis HOM05D006008 ORTHO05D007334 2.0e-38 165.2 177 52.5
vmacro05220 Vaccinium macrocarpon HOM05D006008 ORTHO05D007334 2.0e-38 165.2 225 47.1
Gohir.D05G062300 Gossypium hirsutum HOM05D006008 ORTHO05D007334 3.4e-38 164.5 169 51.5
Gohir.A05G060100 Gossypium hirsutum HOM05D006008 ORTHO05D007334 5.7e-38 163.7 169 50.9
FAN20G2406 Fragaria x ananassa HOM05D006008 ORTHO05D007334 1.3e-37 162.5 161 49.1
CANSAT80G0905 Cannabis sativa HOM05D006008 ORTHO05D007334 1.7e-37 162.2 179 49.7
FAN27G1628 Fragaria x ananassa HOM05D006008 ORTHO05D007334 1.7e-37 162.2 161 49.1
FvH4_2g41180 Fragaria vesca HOM05D006008 ORTHO05D007334 2.2e-37 161.8 161 49.1
Glyma.06G061000 Glycine max HOM05D006008 ORTHO05D007334 2.8e-37 161.4 219 43.8
Lalb_Chr23g0268201 Lupinus albus HOM05D006008 ORTHO05D007334 3.7e-37 161.0 185 48.6
Ah.04g163370 Amaranthus hybridus HOM05D002153 ORTHO05D002137 6.3e-37 160.2 173 50.9
FAN15G1576 Fragaria x ananassa HOM05D006008 ORTHO05D007334 8.3e-37 159.8 161 48.4
Sed0007713 Sechium edule HOM05D006008 ORTHO05D007334 8.3e-37 159.8 177 48.6
CSS0011965 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 1.4e-36 159.1 125 63.2
CSS0032373 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 1.4e-36 159.1 125 63.2
Ca_15782_v3 Cicer arietinum L. HOM05D006008 ORTHO05D007334 1.8e-36 158.7 221 43.9
Nitab4.5_0000147g0080 Nicotiana tabacum HOM05D006008 ORTHO05D007334 1.8e-36 158.7 167 52.7
CANSAT80G2648 Cannabis sativa HOM05D006008 ORTHO05D007334 2.4e-36 158.3 186 46.8
CANSAT21G0760 Cannabis sativa HOM05D006008 ORTHO05D007334 4.1e-36 157.5 143 56.6
Psat5g033520 Pisum sativum HOM05D006008 ORTHO05D007334 4.1e-36 157.5 218 42.7
TPR.G1871 Trifolium pratense HOM05D006008 ORTHO05D007334 4.1e-36 157.5 227 40.5
CSS0025914 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 2.0e-35 155.2 157 54.8
Peaxi162Scf01286g00125 Petunia axillaris HOM05D006008 ORTHO05D007334 4.5e-35 154.1 134 59.0
PGSC0003DMG400027232 Solanum tuberosum HOM05D006008 ORTHO05D007334 7.7e-35 153.3 151 55.6
CDE02G3851 Ceratophyllum demersum HOM05D006008 ORTHO05D007334 1.0e-34 152.9 152 50.7
HanXRQChr09g0270581 Helianthus annuus HOM05D006008 ORTHO05D007334 1.3e-34 152.5 169 49.7
SalBow4G1429 Salvia bowleyana HOM05D006008 ORTHO05D007334 1.7e-34 152.1 186 47.3
PGR142G1849 Punica granatum HOM05D006008 ORTHO05D007334 2.3e-34 151.8 190 48.9
Solyc04g015440.4 Solanum lycopersicum HOM05D006008 ORTHO05D007334 2.3e-34 151.8 134 58.2
Sopen04g007490 Solanum pennellii HOM05D006008 ORTHO05D007334 2.3e-34 151.8 134 58.2
CANSAT54G0183 Cannabis sativa HOM05D006008 ORTHO05D007334 8.6e-34 149.8 161 48.4
Nn7g36097 Nelumbo nucifera HOM05D006008 ORTHO05D007334 8.6e-34 149.8 175 50.3
CAN.G676.42 Capsicum annuum HOM05D006008 ORTHO05D007334 1.1e-33 149.4 134 56.0
ATR0580G290 Amborella trichopoda HOM05D006008 ORTHO05D007334 1.9e-33 148.7 162 48.8
EL10Ac4g08536 Beta vulgaris HOM05D006008 ORTHO05D007334 1.9e-33 148.7 164 48.8
Lj1g0008194 Lotus japonicus HOM05D006008 ORTHO05D007334 5.6e-33 147.1 188 45.2
Cc08_g07210 Coffea canephora HOM05D006008 ORTHO05D007334 4.7e-32 144.1 166 52.4
GSVIVG01035975001 Vitis vinifera HOM05D006008 ORTHO05D007334 1.0e-31 142.9 149 53.0
CSS0002096 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 1.4e-31 142.5 158 55.1
CSS0018849 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 4.4e-30 137.5 171 49.7
Zm00001eb393290 Zea mays HOM05D006008 ORTHO05D007334 5.7e-30 137.1 141 50.4
CSS0030467 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 9.8e-30 136.3 156 51.9
MBI15_g18236_MAGBIO Magnolia biondii HOM05D006008 ORTHO05D007334 2.2e-29 135.2 170 44.7
COL.COLO4_18956 Corchorus olitorius HOM05D006008 ORTHO05D007334 1.8e-28 132.1 125 53.6
Eucgr.C01897 Eucalyptus grandis HOM05D006008 ORTHO05D007334 1.8e-28 132.1 84 71.4
CSS0013958 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 9.2e-28 129.8 97 66.0
Lalb_Chr23g0268191 Lupinus albus HOM05D006008 ORTHO05D007334 9.2e-28 129.8 132 47.7
CSS0046362 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 1.2e-27 129.4 179 45.3
CiPaw.08G005700 Carya illinoinensis HOM05D006008 ORTHO05D007334 1.6e-27 129.0 98 65.3
CsaV3_4G036480 Cucumis sativus L. HOM05D006008 ORTHO05D007334 2.7e-27 128.3 129 47.3
Glyma.04G060500 Glycine max HOM05D006008 ORTHO05D007334 2.7e-27 128.3 122 51.6
FAN20G1003 Fragaria x ananassa HOM05D006008 ORTHO05D007334 3.0e-26 124.8 129 48.8
ATR0180G020 Amborella trichopoda HOM05D006008 ORTHO05D007334 8.6e-26 123.2 123 51.2
Oeu001622.3 Olea europaea HOM05D006008 ORTHO05D007334 1.9e-25 122.1 93 64.5
Nitab4.5_0001663g0180 Nicotiana tabacum HOM05D006008 ORTHO05D007334 4.3e-25 120.9 93 63.4
Os10g0421800 Oryza sativa ssp. japonica HOM05D006008 ORTHO05D007334 9.5e-25 119.8 129 48.8
Nn7g37618 Nelumbo nucifera HOM05D006008 ORTHO05D007334 2.1e-24 118.6 143 46.9
Ciclev10007356m.g Citrus clementina HOM05D006008 ORTHO05D007334 3.6e-24 117.9 84 64.3
CANSAT21G2219 Cannabis sativa HOM05D006008 ORTHO05D007334 4.1e-20 104.4 135 47.4
HPP92_017173 Vanilla planifolia HOM05D006008 ORTHO05D007334 7.0e-20 103.6 124 43.5
AUR62041257 Chenopodium quinoa HOM05D006008 ORTHO05D007334 1.2e-19 102.8 126 46.8
MSTRG.11782 Avicennia marina HOM05D006008 ORTHO05D007334 1.7e-18 99.0 130 47.7
CSS0039067 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 4.3e-17 94.4 108 52.8
SEGI_02316 Sequoiadendron giganteum HOM05D006008 ORTHO05D007334 7.3e-17 93.6 123 42.3
Nn7g36096 Nelumbo nucifera HOM05D006008 ORTHO05D007334 4.0e-15 87.8 120 38.3
SEGI_41266 Sequoiadendron giganteum HOM05D006008 ORTHO05D007334 5.2e-15 87.4 130 40.8
CSS0031354 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 6.0e-11 73.9 85 40.0


User provided reference genes

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