Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung01383 Brassica carinata HOM05D005796 ORTHO05D007054 1.7e-188 662.5 341 100.0
BcaC04g23395 Brassica carinata HOM05D005796 ORTHO05D007054 1.0e-108 397.5 243 86.0
BolC9t53794H Brassica oleracea HOM05D005796 ORTHO05D007054 3.9e-108 395.6 243 85.2
BcaB02g09686 Brassica carinata HOM05D005796 ORTHO05D007054 6.2e-106 388.3 243 83.1
BraA06t25896Z Brassica rapa HOM05D005796 ORTHO05D007054 6.9e-105 384.8 243 82.3
A06p29510 Brassica napus HOM05D000012 ORTHO05D002455 1.2e-104 384.0 242 82.6
Thhalv10004798m.g Eutrema salsugineum HOM05D005796 ORTHO05D007054 1.2e-104 384.0 243 82.7
A09p07830 Brassica napus HOM05D005796 ORTHO05D007054 9.9e-104 380.9 243 84.0
BraA09t36434Z Brassica rapa HOM05D005796 ORTHO05D007054 9.9e-104 380.9 243 84.0
BcaC01g02511 Brassica carinata HOM05D005796 ORTHO05D007054 1.7e-103 380.2 243 82.7
C03p64010 Brassica napus HOM05D000012 ORTHO05D002455 1.7e-103 380.2 242 82.6
BolC3t18656H Brassica oleracea HOM05D005796 ORTHO05D007054 1.7e-103 380.2 243 82.7
BcaB02g09676 Brassica carinata HOM05D005796 ORTHO05D007054 3.8e-103 379.0 242 82.2
Sp2g25890 Schrenkiella parvula HOM05D005796 ORTHO05D007054 6.0e-101 371.7 243 81.5
AL8G39690 Arabidopsis lyrata HOM05D005796 ORTHO05D007054 6.9e-97 358.2 243 80.2
AT5G62720 Arabidopsis thaliana HOM05D005796 ORTHO05D007054 2.2e-95 353.2 243 79.4
C09p08810 Brassica napus HOM05D005796 ORTHO05D007054 4.9e-95 352.1 219 86.3
Carub.0008s2345 Capsella rubella HOM05D005796 ORTHO05D007054 1.1e-94 350.9 243 79.4
CARHR276510 Cardamine hirsuta HOM05D005796 ORTHO05D007054 2.1e-90 336.7 243 76.1
Aa31LG11G960 Aethionema arabicum HOM05D005796 ORTHO05D007054 4.6e-85 318.9 247 71.7
Sp5g14000 Schrenkiella parvula HOM05D005796 ORTHO05D007054 9.4e-78 294.7 249 66.3
Carub.0005s1409 Capsella rubella HOM05D005796 ORTHO05D007054 4.4e-75 285.8 245 66.1
BcaB05g22893 Brassica carinata HOM05D005796 ORTHO05D007054 9.7e-75 284.6 250 65.2
CARHR156700 Cardamine hirsuta HOM05D005796 ORTHO05D007054 9.7e-75 284.6 254 63.8
BolC1t03180H Brassica oleracea HOM05D005796 ORTHO05D007054 4.8e-74 282.3 250 64.0
A01p25720 Brassica napus HOM05D005796 ORTHO05D007054 1.4e-73 280.8 249 63.5
AT3G47980 Arabidopsis thaliana HOM05D005796 ORTHO05D007054 2.4e-73 280.0 250 64.4
BraA01t02488Z Brassica rapa HOM05D005796 ORTHO05D007054 3.1e-73 279.6 250 63.6
C01p32410 Brassica napus HOM05D005796 ORTHO05D007054 4.1e-73 279.3 250 63.6
AL5G27300 Arabidopsis lyrata HOM05D005796 ORTHO05D007054 6.5e-71 271.9 248 62.5
A06p19660 Brassica napus HOM05D005796 ORTHO05D007054 1.1e-70 271.2 259 62.2
BraA06t25046Z Brassica rapa HOM05D005796 ORTHO05D007054 7.2e-70 268.5 249 63.5
Gohir.A07G065400 Gossypium hirsutum HOM05D005796 ORTHO05D007054 5.2e-68 262.3 176 70.5
THA.LOC104821456 Tarenaya hassleriana HOM05D005796 ORTHO05D007054 5.2e-68 262.3 245 61.2
Gorai.001G073800 Gossypium raimondii HOM05D005796 ORTHO05D007054 8.8e-68 261.5 176 70.5
Potri.015G065500 Populus trichocarpa HOM05D005796 ORTHO05D007054 1.1e-65 254.6 179 68.7
TWI60G1143 Tripterygium wilfordii HOM05D005796 ORTHO05D007054 1.8e-65 253.8 175 70.3
CiPaw.11G037800 Carya illinoinensis HOM05D005796 ORTHO05D007054 4.1e-65 252.7 179 68.7
Sc12g0006170 Simmondsia chinensis HOM05D005796 ORTHO05D007054 9.1e-65 251.5 220 59.5
TAR481G0014 Trochodendron aralioides HOM05D005796 ORTHO05D007054 1.2e-64 251.1 182 69.8
Atru.chr9.2321 Acer truncatum HOM05D005796 ORTHO05D007054 1.6e-64 250.8 225 58.7
Manes.14G074300 Manihot esculenta HOM05D005796 ORTHO05D007054 3.5e-64 249.6 176 69.9
GSVIVG01008066001 Vitis vinifera HOM05D005796 ORTHO05D007054 4.5e-64 249.2 178 69.1
Dinv38663 Davidia involucrata HOM05D005796 ORTHO05D007054 5.9e-64 248.8 195 64.6
Prupe.5G185800 Prunus persica HOM05D005796 ORTHO05D007054 7.7e-64 248.4 178 70.2
Duzib084G0674 Durio zibethinus HOM05D005796 ORTHO05D007054 3.8e-63 246.1 176 67.0
Hma1.2p1_0002F.1_g003270 Hydrangea macrophylla HOM05D005796 ORTHO05D007054 3.8e-63 246.1 176 66.5
Thecc.03G078500 Theobroma cacao HOM05D005796 ORTHO05D007054 3.8e-63 246.1 235 56.2
Eucgr.B00422 Eucalyptus grandis HOM05D005796 ORTHO05D007054 5.0e-63 245.7 165 71.5
Actinidia04922 Actinidia chinensis HOM05D005796 ORTHO05D007054 6.5e-63 245.4 178 63.5
MD14G1193900 Malus domestica HOM05D005796 ORTHO05D007054 6.5e-63 245.4 178 68.0
Oeu048731.1 Olea europaea HOM05D005796 ORTHO05D007054 1.1e-62 244.6 194 62.9
Cpa.g.sc414.2 Carica papaya HOM05D005796 ORTHO05D007054 1.5e-62 244.2 180 68.9
CANSAT80G0862 Cannabis sativa HOM05D005796 ORTHO05D007054 2.5e-62 243.4 177 65.5
Lalb_Chr13g0303431 Lupinus albus HOM05D005796 ORTHO05D007054 2.5e-62 243.4 186 63.4
RcHm_v2.0_Chr7g0180561 Rosa chinensis HOM05D005796 ORTHO05D007054 2.5e-62 243.4 168 69.0
MD06G1187500 Malus domestica HOM05D005796 ORTHO05D007054 3.2e-62 243.0 178 66.9
Sabra15G0090700 Salix brachista HOM05D005796 ORTHO05D007054 3.2e-62 243.0 187 63.1
SGA_v2.0_scaffold7G04086 Striga asiatica HOM05D005796 ORTHO05D007054 1.2e-61 241.1 175 68.0
MSTRG.4407 Avicennia marina HOM05D005796 ORTHO05D007054 2.1e-61 240.4 168 70.2
Ciclev10021819m.g Citrus clementina HOM05D005796 ORTHO05D007054 2.1e-61 240.4 181 66.3
FAN18G3372 Fragaria x ananassa HOM05D005796 ORTHO05D007054 2.1e-61 240.4 167 68.9
FAN08G2559 Fragaria x ananassa HOM05D005796 ORTHO05D007054 2.7e-61 240.0 167 68.9
arahy.Tifrunner.gnm1.ann1.U2VSD4 Arachis hypogaea HOM05D005796 ORTHO05D007054 3.6e-61 239.6 181 66.3
Gohir.D07G069900 Gossypium hirsutum HOM05D005796 ORTHO05D007054 3.6e-61 239.6 176 67.0
arahy.Tifrunner.gnm1.ann1.NXA9BP Arachis hypogaea HOM05D005796 ORTHO05D007054 4.7e-61 239.2 181 66.3
FAN13G2643 Fragaria x ananassa HOM05D005796 ORTHO05D007054 8.0e-61 238.4 168 67.9
AUR62008352 Chenopodium quinoa HOM05D005796 ORTHO05D007054 3.0e-60 236.5 198 59.1
Migut.D01857 Erythranthe guttata HOM05D005796 ORTHO05D007054 3.0e-60 236.5 174 65.5
PSO017G2472 Papaver somniferum HOM05D005796 ORTHO05D007054 3.0e-60 236.5 225 56.4
Cc04_g15610 Coffea canephora HOM05D005796 ORTHO05D007054 4.0e-60 236.1 174 67.2
EL10Ac5g10940 Beta vulgaris HOM05D005796 ORTHO05D007054 5.2e-60 235.7 173 66.5
Glyma.17G096600 Glycine max HOM05D005796 ORTHO05D007054 6.7e-60 235.3 175 65.1
Hund02671 Selenicereus undatus HOM05D005796 ORTHO05D007054 8.8e-60 235.0 175 69.1
FAN04G0326 Fragaria x ananassa HOM05D005796 ORTHO05D007054 1.5e-59 234.2 167 66.5
Peaxi162Scf00009g00426 Petunia axillaris HOM05D005796 ORTHO05D007054 1.5e-59 234.2 178 62.9
ECA247G3495 Erigeron canadensis HOM05D005796 ORTHO05D007054 3.3e-59 233.0 174 64.4
Nitab4.5_0004605g0110 Nicotiana tabacum HOM05D005796 ORTHO05D007054 3.3e-59 233.0 184 60.9
VMungo1215G0702 Vigna mungo HOM05D005796 ORTHO05D007054 5.7e-59 232.3 182 58.8
HanXRQChr02g0045201 Helianthus annuus HOM05D005796 ORTHO05D007054 7.5e-59 231.9 183 63.4
PSO478G3339 Papaver somniferum HOM05D005796 ORTHO05D007054 7.5e-59 231.9 177 66.1
Sopen03g032340 Solanum pennellii HOM05D005796 ORTHO05D007054 7.5e-59 231.9 156 68.6
DCAR_026077 Daucus carota HOM05D005796 ORTHO05D007054 6.3e-58 228.8 218 57.3
Solyc03g113280.3 Solanum lycopersicum HOM05D005796 ORTHO05D007054 6.3e-58 228.8 176 63.1
Phvul.003G193000 Phaseolus vulgaris HOM05D005796 ORTHO05D007054 5.3e-57 225.7 175 61.1
Thhalv10010656m.g Eutrema salsugineum HOM05D005796 ORTHO05D007054 9.1e-57 224.9 249 57.0
Aqoxy3G00785 Aquilegia oxysepala HOM05D005796 ORTHO05D007054 1.2e-56 224.6 182 61.0
Nitab4.5_0005402g0010 Nicotiana tabacum HOM05D005796 ORTHO05D007054 1.6e-56 224.2 184 60.3
ATR0665G316 Amborella trichopoda HOM05D005796 ORTHO05D007054 2.0e-56 223.8 176 60.8
CsaV3_1G007940 Cucumis sativus L. HOM05D005796 ORTHO05D007054 2.0e-56 223.8 152 70.4
PGSC0003DMG400025332 Solanum tuberosum HOM05D005796 ORTHO05D007054 2.7e-56 223.4 186 59.1
ClCG01G014370 Citrullus lanatus HOM05D005796 ORTHO05D007054 3.5e-56 223.0 185 61.6
MELO3C002210.2 Cucumis melo HOM05D005796 ORTHO05D007054 3.5e-56 223.0 152 69.7
BcaB01g00857 Brassica carinata HOM05D005796 ORTHO05D007054 4.5e-56 222.6 213 63.8
Lsat_1_v5_gn_1_10700 Lactuca sativa HOM05D005796 ORTHO05D007054 4.5e-56 222.6 177 61.6
BcaC09g49836 Brassica carinata HOM05D005796 ORTHO05D007054 1.0e-55 221.5 213 62.0
Haze_07383 Corylus avellana HOM05D005796 ORTHO05D007054 1.7e-55 220.7 159 70.4
TPR.G38380 Trifolium pratense HOM05D005796 ORTHO05D007054 2.9e-55 219.9 173 58.4
MBI03_g20464_MAGBIO Magnolia biondii HOM05D005796 ORTHO05D007054 6.5e-55 218.8 153 66.7
Ca_21851_v3 Cicer arietinum L. HOM05D005796 ORTHO05D007054 8.5e-55 218.4 179 56.4
Sed0020047 Sechium edule HOM05D005796 ORTHO05D007054 1.5e-54 217.6 197 56.3
CDE02G2117 Ceratophyllum demersum HOM05D005796 ORTHO05D007054 7.2e-54 215.3 177 59.9
Medtr4g107630 Medicago truncatula HOM05D005796 ORTHO05D007054 1.2e-53 214.5 194 53.1
unitig_899.g15402 Utricularia gibba HOM05D003955 ORTHO05D004684 2.7e-53 213.4 199 55.8
Os03g0684700 Oryza sativa ssp. japonica HOM05D005796 ORTHO05D007054 4.7e-53 212.6 140 70.7
unitig_0.g783 Utricularia gibba HOM05D005796 ORTHO05D007054 8.0e-53 211.8 160 62.5
Lj4g0017253 Lotus japonicus HOM05D005796 ORTHO05D007054 1.4e-52 211.1 243 45.3
vmacro19431 Vaccinium macrocarpon HOM05D005796 ORTHO05D007054 3.0e-52 209.9 256 46.9
PGR083G2169 Punica granatum HOM05D005796 ORTHO05D007054 5.2e-52 209.1 158 64.6
BcaNung07157 Brassica carinata HOM05D005796 ORTHO05D007054 9.8e-51 204.9 212 59.4
Aa31LG4G16620 Aethionema arabicum HOM05D005796 ORTHO05D007054 3.7e-50 203.0 213 60.6
SEGI_40570 Sequoiadendron giganteum HOM05D005796 ORTHO05D007054 6.3e-50 202.2 178 53.9
AUR62021745 Chenopodium quinoa HOM05D005796 ORTHO05D007054 9.1e-49 198.4 131 69.5
Zm00001eb217240 Zea mays HOM05D005796 ORTHO05D007054 8.5e-47 191.8 193 51.8
COL.COLO4_37386 Corchorus olitorius HOM05D005796 ORTHO05D007054 1.4e-44 184.5 133 69.2
PGR083G0992 Punica granatum HOM05D005796 ORTHO05D007054 5.7e-43 179.1 140 63.6
SalBow7G0869 Salvia bowleyana HOM05D005796 ORTHO05D007054 3.7e-42 176.4 137 62.8
SMO356G0151 Selaginella moellendorffii HOM05D005796 ORTHO05D007054 4.1e-41 172.9 139 56.8
Lj9A459G48 Lonicera japonica HOM05D005796 ORTHO05D007054 7.0e-41 172.2 130 63.8
Mapoly0029s0058 Marchantia polymorpha HOM05D005796 ORTHO05D007054 2.1e-37 160.6 143 51.7
Sabra12G0050500 Salix brachista HOM05D005796 ORTHO05D007054 2.1e-37 160.6 152 59.2
QL10p015509 Quercus lobata HOM05D005796 ORTHO05D007054 1.2e-35 154.8 95 73.7
AagrBONN_evm.TU.Sc2ySwM_228.2536 Anthoceros agrestis HOM05D005796 ORTHO05D007054 1.5e-35 154.5 156 48.7
Zm00001eb053360 Zea mays HOM05D005796 ORTHO05D007054 4.6e-32 142.9 143 54.5
CAN.G4519.1 Capsicum annuum HOM05D005796 ORTHO05D007054 1.6e-29 134.4 87 69.0
QL10p015507 Quercus lobata HOM05D005796 ORTHO05D007054 1.6e-21 107.8 136 48.5
FvH4_5g15530 Fragaria vesca HOM05D005796 ORTHO05D007054 1.8e-20 104.4 82 63.4
Sed0018874 Sechium edule HOM05D005796 ORTHO05D007054 4.4e-19 99.8 104 54.8
Glyma.05G030200 Glycine max HOM05D005796 ORTHO05D007054 3.6e-13 80.1 72 52.8
Nn4g23032 Nelumbo nucifera HOM05D005796 ORTHO05D007054 6.2e-13 79.3 124 41.1
MCO14G168 Micromonas commoda HOM05D005796 ORTHO05D007054 7.6e-11 72.4 128 32.8
C09p08830 Brassica napus HOM05D005796 ORTHO05D007054 1.3e-10 71.6 37 86.5
Cre11.g467679 Chlamydomonas reinhardtii HOM05D019738 ORTHO05D022279 6.0e-08 62.8 168 25.6
Rhsim08G0160200 Rhododendron simsii HOM05D005796 ORTHO05D007054 1.5e-06 58.2 71 43.7


User provided reference genes

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