Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung01339 Brassica carinata HOM05D005514 ORTHO05D006563 4.7e-191 671.0 331 100.0
BcaNung00443 Brassica carinata HOM05D005514 ORTHO05D006563 2.8e-159 565.5 338 84.9
BolC1t01016H Brassica oleracea HOM05D001777 ORTHO05D006510 4.9e-156 554.7 325 84.6
C01p10530 Brassica napus HOM05D001777 ORTHO05D006510 7.0e-155 550.8 320 85.3
A01p08990 Brassica napus HOM05D001777 ORTHO05D006510 7.1e-147 524.2 327 81.7
Sp7g26930 Schrenkiella parvula HOM05D005514 ORTHO05D006563 1.1e-139 500.4 353 78.2
BcaC09g51675 Brassica carinata HOM05D005514 ORTHO05D006563 3.5e-138 495.4 338 76.6
CARHR236720 Cardamine hirsuta HOM05D005514 ORTHO05D006563 8.9e-134 480.7 355 76.1
AT4G28990 Arabidopsis thaliana HOM05D005514 ORTHO05D006563 4.2e-123 445.3 356 71.1
AL7G23470 Arabidopsis lyrata HOM05D005514 ORTHO05D006563 6.0e-122 441.4 364 70.1
Thhalv10025603m.g Eutrema salsugineum HOM05D005514 ORTHO05D006563 4.8e-119 431.8 364 70.6
BcaNung02893 Brassica carinata HOM05D005514 ORTHO05D006563 5.3e-118 428.3 344 71.5
C07p56560 Brassica napus HOM05D005514 ORTHO05D006563 5.3e-118 428.3 344 71.5
Carub.0007s1165 Capsella rubella HOM05D005514 ORTHO05D006563 6.9e-118 427.9 369 67.8
BcaNung00440 Brassica carinata HOM05D005514 ORTHO05D006563 1.1e-112 410.6 372 67.7
BolC7t46134H Brassica oleracea HOM05D005514 ORTHO05D006563 7.6e-109 397.9 412 60.0
BraA03t14917Z Brassica rapa HOM05D005514 ORTHO05D006563 2.4e-94 349.7 253 74.3
THA.LOC104804022 Tarenaya hassleriana HOM05D005514 ORTHO05D006563 6.1e-82 308.5 367 54.5
THA.LOC104820053 Tarenaya hassleriana HOM05D005514 ORTHO05D006563 3.1e-70 269.6 371 51.5
Aa31LG8G17060 Aethionema arabicum HOM05D005514 ORTHO05D006563 1.7e-60 237.3 481 40.3
Sabra06G0124000 Salix brachista HOM05D005514 ORTHO05D006563 1.2e-56 224.6 385 44.2
AUR62010955 Chenopodium quinoa HOM05D005514 ORTHO05D006563 5.7e-56 222.2 385 45.5
Thecc.09G107100 Theobroma cacao HOM05D005514 ORTHO05D006563 1.8e-54 217.2 392 44.4
Ciclev10008655m.g Citrus clementina HOM05D005514 ORTHO05D006563 1.0e-52 211.5 400 43.8
EL10Ac8g18440 Beta vulgaris HOM05D005514 ORTHO05D006563 6.6e-52 208.8 386 44.3
CiPaw.03G229100 Carya illinoinensis HOM05D005514 ORTHO05D006563 1.1e-51 208.0 393 43.3
Peaxi162Scf00031g00232 Petunia axillaris HOM05D005514 ORTHO05D006563 5.6e-51 205.7 371 43.7
Gohir.D08G262600 Gossypium hirsutum HOM05D005514 ORTHO05D006563 4.7e-50 202.6 394 42.6
Atru.chr7.1371 Acer truncatum HOM05D005514 ORTHO05D006563 6.8e-49 198.7 402 42.5
Duzib168G0165 Durio zibethinus HOM05D005514 ORTHO05D006563 1.5e-48 197.6 389 41.9
QL02p045925 Quercus lobata HOM05D005514 ORTHO05D006563 1.5e-48 197.6 432 40.5
TWI23G1143 Tripterygium wilfordii HOM05D005514 ORTHO05D006563 7.5e-48 195.3 347 45.0
Gorai.004G280600 Gossypium raimondii HOM05D005514 ORTHO05D006563 4.9e-47 192.6 394 42.1
Hma1.2p1_1151F.1_g261950 Hydrangea macrophylla HOM05D005514 ORTHO05D006563 6.4e-47 192.2 390 43.1
CANSAT02G0006 Cannabis sativa HOM05D005514 ORTHO05D006563 1.8e-46 190.7 377 43.0
CAN.G148.5 Capsicum annuum HOM05D005514 ORTHO05D006563 4.1e-46 189.5 375 44.0
Oeu002248.1 Olea europaea HOM05D005514 ORTHO05D006563 5.4e-46 189.1 410 40.7
Solyc05g018340.4 Solanum lycopersicum HOM05D005514 ORTHO05D006563 9.2e-46 188.3 370 42.7
Sopen05g015140 Solanum pennellii HOM05D005514 ORTHO05D006563 9.2e-46 188.3 370 42.7
MD02G1042900 Malus domestica HOM05D005514 ORTHO05D006563 2.7e-45 186.8 391 42.7
Nitab4.5_0000010g0010 Nicotiana tabacum HOM05D005514 ORTHO05D006563 3.5e-45 186.4 383 42.3
Potri.018G083100 Populus trichocarpa HOM05D005514 ORTHO05D006563 3.5e-45 186.4 397 39.3
AUR62021464 Chenopodium quinoa HOM05D005514 ORTHO05D006563 4.6e-45 186.0 395 41.0
Nitab4.5_0000952g0010 Nicotiana tabacum HOM05D005514 ORTHO05D006563 5.9e-45 185.7 401 40.9
CiPaw.04G162600 Carya illinoinensis HOM05D005514 ORTHO05D006563 6.6e-44 182.2 400 40.2
Gohir.A08G241800 Gossypium hirsutum HOM05D005514 ORTHO05D006563 6.6e-44 182.2 397 40.8
HanXRQChr10g0318661 Helianthus annuus HOM05D005514 ORTHO05D006563 8.6e-44 181.8 384 41.4
CsaV3_1G045730 Cucumis sativus L. HOM05D005514 ORTHO05D006563 1.5e-43 181.0 391 40.7
MELO3C024688.2 Cucumis melo HOM05D005514 ORTHO05D006563 5.6e-43 179.1 391 40.7
Duzib150G0489 Durio zibethinus HOM05D005514 ORTHO05D006563 9.5e-43 178.3 392 40.1
Eucgr.C01267 Eucalyptus grandis HOM05D005514 ORTHO05D006563 1.6e-42 177.6 400 41.2
Phvul.004G165700 Phaseolus vulgaris HOM05D005514 ORTHO05D006563 3.6e-42 176.4 384 40.6
Ah.07g205470 Amaranthus hybridus HOM05D005514 ORTHO05D006563 6.2e-42 175.6 374 40.6
PGR142G2557 Punica granatum HOM05D005514 ORTHO05D006563 8.9e-41 171.8 376 40.2
TAR383G0343 Trochodendron aralioides HOM05D001777 ORTHO05D001809 1.5e-40 171.0 365 40.0
Ca_25539_v3 Cicer arietinum L. HOM05D005514 ORTHO05D006563 2.6e-40 170.2 397 40.3
ECA234G0189 Erigeron canadensis HOM05D005514 ORTHO05D006563 2.6e-40 170.2 390 38.5
RcHm_v2.0_Chr2g0089981 Rosa chinensis HOM05D005514 ORTHO05D006563 5.8e-40 169.1 384 39.3
Cc06_g09930 Coffea canephora HOM05D005514 ORTHO05D006563 2.2e-39 167.2 313 44.1
Lalb_Chr22g0352701 Lupinus albus HOM05D005514 ORTHO05D006563 3.2e-38 163.3 385 40.3
Psat1g044240 Pisum sativum HOM05D005514 ORTHO05D006563 2.7e-37 160.2 404 38.4
Potri.006G160500 Populus trichocarpa HOM05D005514 ORTHO05D006563 6.0e-37 159.1 385 37.7
COL.COLO4_34823 Corchorus olitorius HOM05D005514 ORTHO05D006563 7.8e-37 158.7 294 44.2
Hund09218 Selenicereus undatus HOM05D005514 ORTHO05D006563 1.3e-36 157.9 433 36.3
Dinv41624 Davidia involucrata HOM05D005514 ORTHO05D006563 1.7e-36 157.5 325 42.8
Medtr6g087890 Medicago truncatula HOM05D005514 ORTHO05D006563 1.7e-36 157.5 381 40.2
Actinidia32673 Actinidia chinensis HOM05D005514 ORTHO05D006563 2.3e-36 157.1 339 42.2
Sc18g0001310 Simmondsia chinensis HOM05D005514 ORTHO05D006563 3.0e-36 156.8 377 40.8
Manes.03G023100 Manihot esculenta HOM05D005514 ORTHO05D006563 3.9e-36 156.4 314 43.0
TPR.G10049 Trifolium pratense HOM05D005514 ORTHO05D006563 1.9e-35 154.1 407 39.1
Actinidia07405 Actinidia chinensis HOM05D005514 ORTHO05D006563 7.3e-35 152.1 367 41.1
Cpa.g.sc23.79 Carica papaya HOM05D005514 ORTHO05D006563 7.3e-35 152.1 387 37.2
Sed0015833 Sechium edule HOM05D005514 ORTHO05D006563 7.3e-35 152.1 377 36.6
Nn2g11677 Nelumbo nucifera HOM05D005514 ORTHO05D006563 9.5e-35 151.8 385 35.8
vmacro06229 Vaccinium macrocarpon HOM05D005514 ORTHO05D006563 2.1e-34 150.6 332 43.1
MSTRG.10624 Avicennia marina HOM05D005514 ORTHO05D006563 3.6e-34 149.8 337 40.4
Glyma.09G192400 Glycine max HOM05D005514 ORTHO05D006563 6.2e-34 149.1 369 38.8
PGSC0003DMG400027426 Solanum tuberosum HOM05D005514 ORTHO05D006563 8.1e-34 148.7 310 41.6
Cfa003235 Carpinus fangiana HOM05D005514 ORTHO05D006563 4.0e-33 146.4 333 41.7
ClCG06G008760 Citrullus lanatus HOM05D005514 ORTHO05D006563 6.8e-33 145.6 320 40.0
Glyma.07G084500 Glycine max HOM05D005514 ORTHO05D006563 3.4e-32 143.3 347 39.8
Sed0026603 Sechium edule HOM05D005514 ORTHO05D006563 3.4e-32 143.3 449 34.1
Migut.K00501 Erythranthe guttata HOM05D005514 ORTHO05D006563 4.4e-32 142.9 250 43.2
Dinv36656 Davidia involucrata HOM05D005514 ORTHO05D006563 5.8e-32 142.5 329 39.8
arahy.Tifrunner.gnm1.ann1.LW2ZPS Arachis hypogaea HOM05D005514 ORTHO05D006563 9.8e-32 141.7 319 40.4
FvH4_1g04330 Fragaria vesca HOM05D005514 ORTHO05D006563 1.3e-31 141.4 332 40.4
CSS0000167 Camellia sinensis var. sinensis HOM05D005514 ORTHO05D006563 2.2e-31 140.6 332 37.7
arahy.Tifrunner.gnm1.ann1.7WD3SA Arachis hypogaea HOM05D005514 ORTHO05D006563 3.7e-31 139.8 330 40.0
VMungo0464G0467 Vigna mungo HOM05D005514 ORTHO05D006563 6.4e-31 139.0 324 39.8
Lj2g0026530 Lotus japonicus HOM05D005514 ORTHO05D006563 2.4e-30 137.1 428 35.0
FAN26G2817 Fragaria x ananassa HOM05D005514 ORTHO05D006563 7.1e-30 135.6 323 40.2
Prupe.7G234000 Prunus persica HOM05D005514 ORTHO05D006563 1.6e-29 134.4 326 41.1
Lalb_Chr24g0397401 Lupinus albus HOM05D005514 ORTHO05D006563 6.0e-29 132.5 325 38.2
FAN19G0406 Fragaria x ananassa HOM05D005514 ORTHO05D006563 2.3e-28 130.6 323 40.2
FAN23G0542 Fragaria x ananassa HOM05D005514 ORTHO05D006563 3.9e-28 129.8 328 39.6
MD15G1181700 Malus domestica HOM05D005514 ORTHO05D006563 1.1e-27 128.3 331 37.5
DCAR_028696 Daucus carota HOM05D005514 ORTHO05D006563 9.5e-27 125.2 398 35.4
GSVIVG01015362001 Vitis vinifera HOM05D005514 ORTHO05D006563 9.5e-27 125.2 181 48.6
Lalb_Chr14g0371621 Lupinus albus HOM05D005514 ORTHO05D006563 1.6e-26 124.4 319 38.6
Aqoxy7G01583 Aquilegia oxysepala HOM05D005514 ORTHO05D006563 3.6e-26 123.2 460 32.0
A03p58570 Brassica napus HOM05D005514 ORTHO05D006563 6.2e-26 122.5 120 64.2
Nn3g18098 Nelumbo nucifera HOM05D005514 ORTHO05D006563 1.5e-24 117.9 186 45.2
PSO566G0157 Papaver somniferum HOM05D005514 ORTHO05D006563 7.6e-24 115.5 364 35.4
MBI04_g19180_MAGBIO Magnolia biondii HOM05D005514 ORTHO05D006563 1.7e-23 114.4 326 36.5
Haze_25771 Corylus avellana HOM05D005514 ORTHO05D006563 2.2e-23 114.0 249 40.6
Oeu064593.1 Olea europaea HOM05D005514 ORTHO05D006563 4.9e-23 112.8 342 35.7
MSTRG.26360 Avicennia marina HOM05D005514 ORTHO05D006563 1.9e-22 110.9 316 36.1
PSO782G4531 Papaver somniferum HOM05D005514 ORTHO05D006563 2.4e-22 110.5 386 33.7
TAR624G0612 Trochodendron aralioides HOM05D005514 ORTHO05D006563 3.2e-22 110.2 283 36.4
CDE05G2615 Ceratophyllum demersum HOM05D005514 ORTHO05D006563 4.6e-21 106.3 211 38.4
SGA_v2.0_scaffold92G28280 Striga asiatica HOM05D005514 ORTHO05D006563 3.9e-20 103.2 263 38.0
MBI14_g08031_MAGBIO Magnolia biondii HOM05D005514 ORTHO05D006563 5.1e-20 102.8 476 30.0
SEGI_01979 Sequoiadendron giganteum HOM05D005514 ORTHO05D006563 5.1e-20 102.8 314 35.4
ATR0315G038 Amborella trichopoda HOM05D005514 ORTHO05D006563 1.5e-19 101.3 339 33.6
Os02g0274700 Oryza sativa ssp. japonica HOM05D005514 ORTHO05D006563 1.5e-19 101.3 271 34.7
Lsat_1_v5_gn_5_102941 Lactuca sativa HOM05D005514 ORTHO05D006563 9.6e-19 98.6 233 38.6
Lj7A655G38 Lonicera japonica HOM05D005514 ORTHO05D006563 1.6e-18 97.8 206 39.3
Zm00001eb147430 Zea mays HOM05D005514 ORTHO05D006563 2.1e-18 97.4 292 31.5
CDE05G1480 Ceratophyllum demersum HOM05D005514 ORTHO05D006563 1.4e-17 94.7 287 32.8
Sabra18G0070900 Salix brachista HOM05D005514 ORTHO05D006563 9.9e-16 88.6 204 35.3
HPP92_000517 Vanilla planifolia HOM05D005514 ORTHO05D006563 1.7e-15 87.8 273 34.4
Os06g0332900 Oryza sativa ssp. japonica HOM05D005514 ORTHO05D006563 2.9e-15 87.0 276 34.4
Rhsim03G0240000 Rhododendron simsii HOM05D005514 ORTHO05D006563 6.4e-15 85.9 231 38.1
SEGI_18875 Sequoiadendron giganteum HOM05D005514 ORTHO05D006563 1.3e-10 71.6 386 29.3
SMO169G0168 Selaginella moellendorffii HOM05D005514 ORTHO05D006563 6.2e-10 69.3 158 37.3
Thhalv10009671m.g Eutrema salsugineum HOM05D004603 ORTHO05D005244 2.6e-08 63.9 123 38.2
BcaC08g47141 Brassica carinata HOM05D005514 ORTHO05D006563 2.2e-07 60.8 58 60.3
Pp3c14_23580 Physcomitrium patens HOM05D005514 ORTHO05D006563 3.8e-07 60.1 317 30.3
SMO116G0230 Selaginella moellendorffii HOM05D005514 ORTHO05D006563 8.4e-07 58.9 48 54.2
Mapoly0001s0121 Marchantia polymorpha HOM05D005514 ORTHO05D006563 4.2e-06 56.6 321 28.3


User provided reference genes

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