Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung01304 Brassica carinata HOM05D006134 ORTHO05D007671 1.6e-64 249.2 118 100.0
C01p00090 Brassica napus HOM05D006134 ORTHO05D007671 1.6e-64 249.2 118 100.0
A01p00050 Brassica napus HOM05D006134 ORTHO05D007671 2.1e-61 238.8 119 96.6
BcaNung04221 Brassica carinata HOM05D006134 ORTHO05D007671 2.9e-58 228.4 119 93.3
Sp7g37280 Schrenkiella parvula HOM05D006134 ORTHO05D007671 1.0e-52 209.9 124 81.5
Aa31LG6G16690 Aethionema arabicum HOM05D006134 ORTHO05D007671 3.4e-51 204.9 124 78.2
Thhalv10026572m.g Eutrema salsugineum HOM05D006134 ORTHO05D007671 1.9e-49 199.1 124 79.0
Carub.0007s0038 Capsella rubella HOM05D006134 ORTHO05D007671 3.2e-49 198.4 124 78.2
AL7G10360 Arabidopsis lyrata HOM05D006134 ORTHO05D007671 8.6e-47 190.3 117 80.3
THA.LOC104807806 Tarenaya hassleriana HOM05D006134 ORTHO05D007671 3.3e-46 188.3 124 71.0
AT4G38495 Arabidopsis thaliana HOM05D006134 ORTHO05D007671 1.2e-45 186.4 125 74.4
Cpa.g.sc182.12 Carica papaya HOM05D006134 ORTHO05D007671 3.4e-43 178.3 125 68.8
CSS0024749 Camellia sinensis var. sinensis HOM05D006134 ORTHO05D007671 4.4e-43 177.9 125 68.8
CSS0037732 Camellia sinensis var. sinensis HOM05D006134 ORTHO05D007671 4.4e-43 177.9 125 68.8
Atru.chr9.1880 Acer truncatum HOM05D006134 ORTHO05D007671 9.8e-43 176.8 125 67.2
Ciclev10029589m.g Citrus clementina HOM05D006134 ORTHO05D007671 9.8e-43 176.8 125 67.2
CSS0027024 Camellia sinensis var. sinensis HOM05D006134 ORTHO05D007671 2.9e-42 175.3 125 67.2
CiPaw.10G137600 Carya illinoinensis HOM05D006134 ORTHO05D007671 2.9e-42 175.3 125 68.8
Glyma.11G156931 Glycine max HOM05D006134 ORTHO05D007671 2.9e-42 175.3 125 68.0
Phvul.005G034200 Phaseolus vulgaris HOM05D006134 ORTHO05D007671 3.7e-42 174.9 125 65.6
VMungo1080G1627 Vigna mungo HOM05D006134 ORTHO05D007671 3.7e-42 174.9 125 67.2
Cc02_g30030 Coffea canephora HOM05D006134 ORTHO05D007671 4.9e-42 174.5 125 66.4
CsaV3_2G009990 Cucumis sativus L. HOM05D006134 ORTHO05D007671 4.9e-42 174.5 125 64.8
Dinv21074 Davidia involucrata HOM05D006134 ORTHO05D007671 6.4e-42 174.1 125 68.0
Psat5g110600 Pisum sativum HOM05D006134 ORTHO05D007671 6.4e-42 174.1 125 66.4
MELO3C008634.2 Cucumis melo HOM05D006134 ORTHO05D007671 8.3e-42 173.7 125 64.8
Manes.11G097800 Manihot esculenta HOM05D006134 ORTHO05D007671 8.3e-42 173.7 125 68.0
Oeu055649.1 Olea europaea HOM05D006134 ORTHO05D007671 8.3e-42 173.7 124 64.5
SGA_v2.0_scaffold207G41895 Striga asiatica HOM05D006134 ORTHO05D007671 8.3e-42 173.7 124 63.7
CANSAT80G1040 Cannabis sativa HOM05D006134 ORTHO05D007671 1.1e-41 173.3 125 65.6
Haze_00699 Corylus avellana HOM05D006134 ORTHO05D007671 1.1e-41 173.3 125 67.2
Medtr3g082190 Medicago truncatula HOM05D006134 ORTHO05D007671 1.4e-41 172.9 125 65.6
Sc08g0002730 Simmondsia chinensis HOM05D006134 ORTHO05D007671 1.4e-41 172.9 121 66.9
FvH4_5g23580 Fragaria vesca HOM05D006134 ORTHO05D007671 1.9e-41 172.6 124 64.5
FAN18G0426 Fragaria x ananassa HOM05D006134 ORTHO05D007671 1.9e-41 172.6 124 64.5
FAN18G3769 Fragaria x ananassa HOM05D006134 ORTHO05D007671 1.9e-41 172.6 124 64.5
Lalb_Chr10g0093471 Lupinus albus HOM05D006134 ORTHO05D007671 1.9e-41 172.6 125 66.4
Lalb_Chr10g0093491 Lupinus albus HOM05D006134 ORTHO05D007671 1.9e-41 172.6 125 66.4
arahy.Tifrunner.gnm1.ann1.A6PCA1 Arachis hypogaea HOM05D006134 ORTHO05D007671 2.4e-41 172.2 125 65.6
FAN04G0013 Fragaria x ananassa HOM05D006134 ORTHO05D007671 2.4e-41 172.2 124 64.5
FAN08G0898 Fragaria x ananassa HOM05D006134 ORTHO05D007671 2.4e-41 172.2 124 64.5
Gohir.A01G010500 Gossypium hirsutum HOM05D006134 ORTHO05D007671 2.4e-41 172.2 124 65.3
Gohir.D01G010100 Gossypium hirsutum HOM05D006134 ORTHO05D007671 2.4e-41 172.2 124 65.3
Gorai.002G012200 Gossypium raimondii HOM05D006134 ORTHO05D007671 2.4e-41 172.2 124 65.3
RcHm_v2.0_Chr7g0212881 Rosa chinensis HOM05D006134 ORTHO05D007671 2.4e-41 172.2 124 64.5
SGA_v2.0_scaffold80G25864 Striga asiatica HOM05D006134 ORTHO05D007671 3.2e-41 171.8 124 62.9
Ca_17958_v3 Cicer arietinum L. HOM05D006134 ORTHO05D007671 4.1e-41 171.4 125 64.0
Duzib052G0391 Durio zibethinus HOM05D006134 ORTHO05D007671 4.1e-41 171.4 124 65.3
Potri.016G127200 Populus trichocarpa HOM05D006134 ORTHO05D007671 4.1e-41 171.4 124 66.1
Sed0025018 Sechium edule HOM05D006134 ORTHO05D007671 5.4e-41 171.0 125 63.2
AUR62021421 Chenopodium quinoa HOM05D006134 ORTHO05D007671 7.1e-41 170.6 125 67.2
QL11p052022 Quercus lobata HOM05D006134 ORTHO05D007671 7.1e-41 170.6 124 66.1
QL11p052248 Quercus lobata HOM05D006134 ORTHO05D007671 7.1e-41 170.6 124 66.1
Migut.N01297 Erythranthe guttata HOM05D006134 ORTHO05D007671 9.2e-41 170.2 124 63.7
Peaxi162Scf00359g00813 Petunia axillaris HOM05D006134 ORTHO05D007671 9.2e-41 170.2 125 63.2
Lj6g0003235 Lotus japonicus HOM05D006134 ORTHO05D007671 1.6e-40 169.5 125 64.8
COL.COLO4_32379 Corchorus olitorius HOM05D006134 ORTHO05D007671 2.1e-40 169.1 124 63.7
Hund14365 Selenicereus undatus HOM05D006134 ORTHO05D007671 2.7e-40 168.7 125 65.6
arahy.Tifrunner.gnm1.ann1.PD8D7M Arachis hypogaea HOM05D006134 ORTHO05D007671 3.5e-40 168.3 125 64.8
FAN13G0082 Fragaria x ananassa HOM05D006134 ORTHO05D007671 3.5e-40 168.3 124 63.7
Ah.01g023220 Amaranthus hybridus HOM05D006134 ORTHO05D007671 4.6e-40 167.9 125 64.0
EL10Ac9g21342 Beta vulgaris HOM05D006134 ORTHO05D007671 1.3e-39 166.4 125 64.8
Dinv31631 Davidia involucrata HOM05D006134 ORTHO05D007671 1.3e-39 166.4 125 64.8
Nitab4.5_0000101g0190 Nicotiana tabacum HOM05D006134 ORTHO05D007671 1.7e-39 166.0 125 62.4
SalBow3G4511 Salvia bowleyana HOM05D006134 ORTHO05D007671 3.0e-39 165.2 124 61.3
Thecc.02G130200 Theobroma cacao HOM05D006134 ORTHO05D007671 3.0e-39 165.2 124 62.9
TWI79G0531 Tripterygium wilfordii HOM05D006134 ORTHO05D007671 5.1e-39 164.5 125 67.2
TAR376G1190 Trochodendron aralioides HOM05D006134 ORTHO05D007671 6.6e-39 164.1 125 63.2
GSVIVG01023976001 Vitis vinifera HOM05D006134 ORTHO05D007671 6.6e-39 164.1 125 61.6
PGR042G1126 Punica granatum HOM05D006134 ORTHO05D007671 1.1e-38 163.3 125 62.4
DCAR_025267 Daucus carota HOM05D006444 ORTHO05D007748 1.9e-38 162.5 125 62.4
Lsat_1_v5_gn_1_25060 Lactuca sativa HOM05D006134 ORTHO05D007671 1.9e-38 162.5 124 62.1
TAR628G0583 Trochodendron aralioides HOM05D006134 ORTHO05D007671 1.9e-38 162.5 125 64.0
Nn6g31911 Nelumbo nucifera HOM05D006134 ORTHO05D007671 2.5e-38 162.2 125 61.6
Nitab4.5_0000890g0130 Nicotiana tabacum HOM05D006134 ORTHO05D007671 2.5e-38 162.2 132 59.8
MSTRG.5438 Avicennia marina HOM05D006134 ORTHO05D007671 3.3e-38 161.8 124 59.7
BolC1t00014H Brassica oleracea HOM05D006134 ORTHO05D007671 3.3e-38 161.8 74 100.0
AUR62010905 Chenopodium quinoa HOM05D006134 ORTHO05D007671 3.3e-38 161.8 137 61.3
Oeu002964.1 Olea europaea HOM05D006134 ORTHO05D007671 3.3e-38 161.8 124 59.7
unitig_52.g17376 Utricularia gibba HOM05D006134 ORTHO05D007671 4.3e-38 161.4 124 60.5
HanXRQChr12g0383651 Helianthus annuus HOM05D006134 ORTHO05D007671 9.5e-38 160.2 125 60.8
PGSC0003DMG400020551 Solanum tuberosum HOM05D006134 ORTHO05D007671 1.2e-37 159.8 125 60.8
PSO170G0646 Papaver somniferum HOM05D006134 ORTHO05D007671 2.1e-37 159.1 125 60.0
CAN.G181.11 Capsicum annuum HOM05D006134 ORTHO05D007671 2.8e-37 158.7 125 60.0
PSO210G5022 Papaver somniferum HOM05D006134 ORTHO05D007671 2.8e-37 158.7 125 60.0
Sopen06g002390 Solanum pennellii HOM05D006134 ORTHO05D007671 3.6e-37 158.3 125 60.0
ClCG11G010360 Citrullus lanatus HOM05D006134 ORTHO05D007671 4.7e-37 157.9 105 68.6
Solyc06g007480.3 Solanum lycopersicum HOM05D006134 ORTHO05D007671 4.7e-37 157.9 125 60.0
CDE04G1640 Ceratophyllum demersum HOM05D006134 ORTHO05D007671 8.1e-37 157.1 125 61.6
Aqoxy5G01105 Aquilegia oxysepala HOM05D006134 ORTHO05D007671 1.4e-36 156.4 124 58.9
Eucgr.F02572 Eucalyptus grandis HOM05D006134 ORTHO05D007671 1.4e-36 156.4 125 61.6
ECA247G3382 Erigeron canadensis HOM05D006134 ORTHO05D007671 1.8e-36 156.0 125 59.2
Rhsim11G0193500 Rhododendron simsii HOM05D006134 ORTHO05D007671 1.8e-36 156.0 171 49.1
Duzib248G0743 Durio zibethinus HOM05D006134 ORTHO05D007671 3.1e-36 155.2 149 53.0
BraA01t00010Z Brassica rapa HOM05D006134 ORTHO05D007671 1.5e-35 152.9 75 96.0
HanXRQChr10g0314981 Helianthus annuus HOM05D006134 ORTHO05D007671 1.5e-35 152.9 125 59.2
CDE02G2427 Ceratophyllum demersum HOM05D006134 ORTHO05D007671 5.8e-35 151.0 125 59.2
A07p02890 Brassica napus HOM05D006134 ORTHO05D007671 1.9e-33 146.0 72 95.8
BraA07t28089Z Brassica rapa HOM05D006134 ORTHO05D007671 1.9e-33 146.0 72 95.8
Prupe.7G004000 Prunus persica HOM05D006134 ORTHO05D007671 1.9e-33 146.0 125 58.4
Pp3c14_10610 Physcomitrium patens HOM05D006134 ORTHO05D007671 2.4e-33 145.6 122 57.4
Pp3c14_10611 Physcomitrium patens HOM05D006134 ORTHO05D007671 2.4e-33 145.6 122 57.4
ATR0730G227 Amborella trichopoda HOM05D006134 ORTHO05D007671 3.2e-33 145.2 125 57.6
Sed0020335 Sechium edule HOM05D006134 ORTHO05D007671 3.2e-33 145.2 125 56.0
vmacro02291 Vaccinium macrocarpon HOM05D006134 ORTHO05D007671 5.4e-33 144.4 204 43.1
Mapoly0028s0104 Marchantia polymorpha HOM05D006134 ORTHO05D007671 7.1e-33 144.1 122 54.9
MD12G1003500 Malus domestica HOM05D006134 ORTHO05D007671 9.2e-33 143.7 102 67.6
Os04g0274400 Oryza sativa ssp. japonica HOM05D006134 ORTHO05D007671 7.8e-32 140.6 125 56.8
HanXRQChr07g0198481 Helianthus annuus HOM05D006134 ORTHO05D007671 1.7e-31 139.4 125 55.2
SMO367G0732 Selaginella moellendorffii HOM05D006134 ORTHO05D007671 6.6e-31 137.5 123 56.1
AUR62013003 Chenopodium quinoa HOM05D006134 ORTHO05D007671 8.6e-31 137.1 102 67.6
AUR62010013 Chenopodium quinoa HOM05D006134 ORTHO05D007671 3.6e-29 131.7 102 65.7
AUR62015152 Chenopodium quinoa HOM05D006134 ORTHO05D007671 6.2e-29 131.0 102 64.7
CBR_g12196 Chara braunii HOM05D006134 ORTHO05D007671 7.6e-27 124.0 119 53.8
Zm00001eb420290 Zea mays HOM05D006134 ORTHO05D007671 1.1e-25 120.2 113 54.0
Sabra16G0121200 Salix brachista HOM05D006134 ORTHO05D007671 5.1e-23 111.3 80 63.8
Sabra16G0122100 Salix brachista HOM05D006134 ORTHO05D007671 5.1e-23 111.3 80 63.8
CARHR294230 Cardamine hirsuta HOM05D006134 ORTHO05D007671 6.0e-16 87.8 67 68.7
SEGI_00696 Sequoiadendron giganteum HOM05D006134 ORTHO05D007671 1.3e-15 86.7 68 58.8
Nitab4.5_0000165g0190 Nicotiana tabacum HOM05D006134 ORTHO05D007671 1.4e-12 76.6 67 58.2
Prupe.4G038000 Prunus persica HOM05D006134 ORTHO05D007671 7.6e-11 70.9 105 41.0
Ca_02756_v3 Cicer arietinum L. HOM05D006134 ORTHO05D007671 2.9e-10 68.9 57 56.1
Ca_02758_v3 Cicer arietinum L. HOM05D006134 ORTHO05D007671 2.9e-10 68.9 57 56.1
SHI24498 Sapria himalayana HOM05D006134 ORTHO05D007671 8.4e-10 67.4 47 63.8
Ca_02994_v3 Cicer arietinum L. HOM05D006134 ORTHO05D007671 5.5e-09 64.7 59 52.5
Sabra16G0121700 Salix brachista HOM05D006134 ORTHO05D007671 2.3e-07 59.3 45 64.4
TPR.G34385 Trifolium pratense HOM05D006134 ORTHO05D007671 3.0e-07 58.9 44 63.6
EL10Ac8g18393 Beta vulgaris HOM05D006134 ORTHO05D007671 9.6e-06 53.9 48 58.3


User provided reference genes

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