Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung01286 Brassica carinata HOM05D006646 ORTHO05D008279 4.5e-65 251.1 130 100.0
BcaNung01943 Brassica carinata HOM05D006646 ORTHO05D008279 1.9e-39 166.0 112 83.0
C07p63380 Brassica napus HOM05D006646 ORTHO05D008279 1.9e-39 166.0 112 83.0
A06p48720 Brassica napus HOM05D006646 ORTHO05D008279 3.3e-39 165.2 112 83.0
BolC7t46749H Brassica oleracea HOM05D006646 ORTHO05D008279 3.3e-39 165.2 112 83.0
BraA06t27738Z Brassica rapa HOM05D006646 ORTHO05D008279 7.3e-39 164.1 112 82.1
Sp7g36790 Schrenkiella parvula HOM05D006646 ORTHO05D008279 4.4e-36 154.8 112 81.2
Carub.0007s0091 Capsella rubella HOM05D006646 ORTHO05D008279 1.4e-34 149.8 112 77.7
AL7G10980 Arabidopsis lyrata HOM05D006646 ORTHO05D008279 2.4e-34 149.1 112 77.7
CARHR247710 Cardamine hirsuta HOM05D006646 ORTHO05D008279 7.0e-34 147.5 112 77.7
Thhalv10025960m.g Eutrema salsugineum HOM05D006646 ORTHO05D008279 7.0e-34 147.5 112 80.4
Aa31LG6G16210 Aethionema arabicum HOM05D006646 ORTHO05D008279 3.6e-30 135.2 112 74.1
AT4G39040 Arabidopsis thaliana HOM05D006646 ORTHO05D008279 4.1e-26 121.7 84 82.1
THA.LOC104807761 Tarenaya hassleriana HOM05D006646 ORTHO05D008279 3.4e-20 102.1 112 58.0
COL.COLO4_26029 Corchorus olitorius HOM05D006646 ORTHO05D008279 4.4e-20 101.7 110 60.9
Gohir.A12G041400 Gossypium hirsutum HOM05D006646 ORTHO05D008279 1.9e-18 96.3 110 60.0
Cpa.g.sc150.36 Carica papaya HOM05D006646 ORTHO05D008279 2.4e-18 95.9 113 56.6
Gohir.D12G030800 Gossypium hirsutum HOM05D006646 ORTHO05D008279 4.2e-18 95.1 110 60.0
Gorai.008G031700 Gossypium raimondii HOM05D006646 ORTHO05D008279 4.2e-18 95.1 110 60.0
MD10G1065400 Malus domestica HOM05D006646 ORTHO05D008279 4.2e-18 95.1 112 58.0
FAN27G0283 Fragaria x ananassa HOM05D006646 ORTHO05D008279 5.4e-18 94.7 104 56.7
Duzib132G1122 Durio zibethinus HOM05D006646 ORTHO05D008279 1.6e-17 93.2 109 56.0
Manes.04G084900 Manihot esculenta HOM05D006646 ORTHO05D008279 1.6e-17 93.2 110 53.6
Thecc.02G077600 Theobroma cacao HOM05D006646 ORTHO05D008279 2.7e-17 92.4 110 56.4
CiPaw.06G130600 Carya illinoinensis HOM05D006646 ORTHO05D008279 7.8e-17 90.9 109 54.1
AL4G10520 Arabidopsis lyrata HOM05D006646 ORTHO05D008279 1.0e-16 90.5 64 73.4
FvH4_2g10110 Fragaria vesca HOM05D006646 ORTHO05D008279 1.0e-16 90.5 104 54.8
FAN15G0580 Fragaria x ananassa HOM05D006646 ORTHO05D008279 1.0e-16 90.5 104 54.8
RcHm_v2.0_Chr6g0267071 Rosa chinensis HOM05D006646 ORTHO05D008279 1.3e-16 90.1 104 54.8
QL11p045794 Quercus lobata HOM05D006646 ORTHO05D008279 1.7e-16 89.7 109 53.2
FAN24G1192 Fragaria x ananassa HOM05D006646 ORTHO05D008279 2.3e-16 89.4 104 54.8
CARHR112230 Cardamine hirsuta HOM05D006646 ORTHO05D008279 3.9e-16 88.6 63 76.2
Cfa005079 Carpinus fangiana HOM05D006646 ORTHO05D008279 3.9e-16 88.6 113 47.8
Eucgr.G01718 Eucalyptus grandis HOM05D006646 ORTHO05D008279 3.9e-16 88.6 113 51.3
Potri.009G122500 Populus trichocarpa HOM05D006646 ORTHO05D008279 3.9e-16 88.6 110 52.7
Prupe.8G087400 Prunus persica HOM05D006646 ORTHO05D008279 3.9e-16 88.6 112 56.2
AT2G21350 Arabidopsis thaliana HOM05D006646 ORTHO05D008279 8.7e-16 87.4 68 69.1
CSS0016085 Camellia sinensis var. sinensis HOM05D006646 ORTHO05D008279 8.7e-16 87.4 112 51.8
CSS0027643 Camellia sinensis var. sinensis HOM05D006646 ORTHO05D008279 8.7e-16 87.4 112 51.8
Cc02_g17030 Coffea canephora HOM05D006646 ORTHO05D008279 8.7e-16 87.4 113 50.4
GSVIVG01024200001 Vitis vinifera HOM05D006646 ORTHO05D008279 1.9e-15 86.3 109 53.2
Migut.B00188 Erythranthe guttata HOM05D006646 ORTHO05D008279 2.5e-15 85.9 114 50.9
Oeu008579.1 Olea europaea HOM05D006646 ORTHO05D008279 2.5e-15 85.9 109 47.7
Ciclev10028627m.g Citrus clementina HOM05D006646 ORTHO05D008279 3.3e-15 85.5 112 51.8
Sed0001649 Sechium edule HOM05D006646 ORTHO05D008279 3.3e-15 85.5 109 46.8
Nitab4.5_0010034g0020 Nicotiana tabacum HOM05D006646 ORTHO05D008279 4.3e-15 85.1 108 55.6
CAN.G170.87 Capsicum annuum HOM05D006646 ORTHO05D008279 5.6e-15 84.7 108 55.6
DCAR_022798 Daucus carota HOM05D006646 ORTHO05D008279 7.3e-15 84.3 110 51.8
Dinv23471 Davidia involucrata HOM05D006646 ORTHO05D008279 7.3e-15 84.3 109 55.0
TWI75G0841 Tripterygium wilfordii HOM05D006646 ORTHO05D008279 7.3e-15 84.3 111 53.2
Glyma.11G112300 Glycine max HOM05D006646 ORTHO05D008279 9.6e-15 84.0 66 69.7
Nn6g32216 Nelumbo nucifera HOM05D006646 ORTHO05D008279 1.3e-14 83.6 109 53.2
MELO3C013428.2 Cucumis melo HOM05D006646 ORTHO05D008279 1.6e-14 83.2 112 50.9
arahy.Tifrunner.gnm1.ann1.RI2JL3 Arachis hypogaea HOM05D006646 ORTHO05D008279 2.1e-14 82.8 83 57.8
Carub.0004s0039 Capsella rubella HOM05D006646 ORTHO05D008279 2.8e-14 82.4 65 69.2
arahy.Tifrunner.gnm1.ann1.I36BMJ Arachis hypogaea HOM05D006646 ORTHO05D008279 3.6e-14 82.0 78 60.3
MSTRG.16840 Avicennia marina HOM05D006646 ORTHO05D008279 3.6e-14 82.0 109 49.5
CsaV3_7G000290 Cucumis sativus L. HOM05D006646 ORTHO05D008279 3.6e-14 82.0 109 48.6
TAR376G0115 Trochodendron aralioides HOM05D006646 ORTHO05D008279 3.6e-14 82.0 110 50.0
Lj3g0021213 Lotus japonicus HOM05D006646 ORTHO05D008279 4.8e-14 81.6 110 51.8
ClCG02G004640 Citrullus lanatus HOM05D006646 ORTHO05D008279 6.2e-14 81.3 66 69.7
Lalb_Chr01g0002221 Lupinus albus HOM05D006646 ORTHO05D008279 6.2e-14 81.3 83 57.8
Peaxi162Scf00016g00142 Petunia axillaris HOM05D006646 ORTHO05D008279 6.2e-14 81.3 108 56.5
Solyc01g110270.3 Solanum lycopersicum HOM05D006646 ORTHO05D008279 6.2e-14 81.3 113 51.3
Sopen01g052420 Solanum pennellii HOM05D006646 ORTHO05D008279 6.2e-14 81.3 113 51.3
PGSC0003DMG400003128 Solanum tuberosum HOM05D006646 ORTHO05D008279 6.2e-14 81.3 113 51.3
Thhalv10000312m.g Eutrema salsugineum HOM05D006646 ORTHO05D008279 8.1e-14 80.9 60 71.7
Phvul.011G040400 Phaseolus vulgaris HOM05D006646 ORTHO05D008279 8.1e-14 80.9 77 59.7
VMungo1127G0939 Vigna mungo HOM05D006646 ORTHO05D008279 8.1e-14 80.9 107 51.4
MBI05_g30638_MAGBIO Magnolia biondii HOM05D006646 ORTHO05D008279 1.1e-13 80.5 110 47.3
Sed0000071 Sechium edule HOM05D006646 ORTHO05D008279 1.1e-13 80.5 110 46.4
SalBow6G1011 Salvia bowleyana HOM05D006646 ORTHO05D008279 1.4e-13 80.1 78 62.8
vmacro02064 Vaccinium macrocarpon HOM05D006646 ORTHO05D008279 1.4e-13 80.1 88 56.8
Hma1.2p1_0851F.1_g228260 Hydrangea macrophylla HOM05D006646 ORTHO05D008279 1.8e-13 79.7 110 51.8
PGR042G2699 Punica granatum HOM05D006646 ORTHO05D008279 2.4e-13 79.3 109 51.4
SGA_v2.0_scaffold58G20474 Striga asiatica HOM05D006646 ORTHO05D008279 3.1e-13 79.0 81 55.6
unitig_32.g11060 Utricularia gibba HOM05D006646 ORTHO05D008279 4.0e-13 78.6 76 59.2
Aqoxy6G02397 Aquilegia oxysepala HOM05D006646 ORTHO05D008279 5.3e-13 78.2 106 50.0
BcaC02g08796 Brassica carinata HOM05D006646 ORTHO05D008279 5.3e-13 78.2 60 70.0
A04p16110 Brassica napus HOM05D006646 ORTHO05D008279 5.3e-13 78.2 58 70.7
C04p50570 Brassica napus HOM05D006646 ORTHO05D008279 5.3e-13 78.2 60 70.0
BolC4t26655H Brassica oleracea HOM05D006646 ORTHO05D008279 5.3e-13 78.2 60 70.0
BraA04t17251Z Brassica rapa HOM05D006646 ORTHO05D008279 5.3e-13 78.2 58 70.7
CDE09G0634 Ceratophyllum demersum HOM05D006646 ORTHO05D008279 1.2e-12 77.0 110 50.9
HanXRQChr05g0139661 Helianthus annuus HOM05D006646 ORTHO05D008279 1.2e-12 77.0 87 51.7
Sc18g0005310 Simmondsia chinensis HOM05D006646 ORTHO05D008279 1.2e-12 77.0 61 72.1
AUR62016804 Chenopodium quinoa HOM05D006646 ORTHO05D008279 1.5e-12 76.6 101 48.5
ECA247G1974 Erigeron canadensis HOM05D006646 ORTHO05D008279 1.5e-12 76.6 74 59.5
Sp4g00530 Schrenkiella parvula HOM05D006646 ORTHO05D008279 2.0e-12 76.3 62 66.1
FAN24G0918 Fragaria x ananassa HOM05D001806 ORTHO05D002069 3.4e-12 75.5 92 53.3
Atru.chr5.3116 Acer truncatum HOM05D006646 ORTHO05D008279 4.4e-12 75.1 75 56.0
FAN09G3166 Fragaria x ananassa HOM05D006646 ORTHO05D008279 4.4e-12 75.1 93 52.7
Lsat_1_v5_gn_4_68441 Lactuca sativa HOM05D006646 ORTHO05D008279 5.8e-12 74.7 95 47.4
ATR0661G343 Amborella trichopoda HOM05D006646 ORTHO05D008279 9.9e-12 73.9 117 47.0
FAN19G2814 Fragaria x ananassa HOM05D006646 ORTHO05D008279 9.9e-12 73.9 91 53.8
EL10Ac9g21659 Beta vulgaris HOM05D006646 ORTHO05D008279 1.3e-11 73.6 106 47.2
Hund06269 Selenicereus undatus HOM05D006646 ORTHO05D008279 2.2e-11 72.8 73 63.0
CDE02G3850 Ceratophyllum demersum HOM05D006646 ORTHO05D008279 2.9e-11 72.4 110 49.1
TPR.G16241 Trifolium pratense HOM05D006646 ORTHO05D008279 6.4e-11 71.2 76 53.9
Medtr4g071330 Medicago truncatula HOM05D006646 ORTHO05D008279 1.1e-10 70.5 75 56.0
PSO541G0619 Papaver somniferum HOM05D006646 ORTHO05D008279 1.9e-10 69.7 92 51.1
Ca_20923_v3 Cicer arietinum L. HOM05D006646 ORTHO05D008279 1.2e-09 67.0 75 53.3
Haze_02302 Corylus avellana HOM05D006646 ORTHO05D008279 4.6e-09 65.1 146 35.6
FAN05G0067 Fragaria x ananassa HOM05D006646 ORTHO05D008279 1.3e-08 63.5 53 67.9
FAN05G1359 Fragaria x ananassa HOM05D006646 ORTHO05D008279 1.3e-08 63.5 53 67.9
Psat0s2721g0040 Pisum sativum HOM05D006646 ORTHO05D008279 2.3e-08 62.8 75 49.3
AUR62010412 Chenopodium quinoa HOM05D006646 ORTHO05D008279 3.0e-08 62.4 98 42.9
FAN18G1095 Fragaria x ananassa HOM05D006646 ORTHO05D008279 3.9e-08 62.0 54 64.8
Os10g0512500 Oryza sativa ssp. japonica HOM05D006646 ORTHO05D008279 3.9e-08 62.0 91 44.0
HPP92_007403 Vanilla planifolia HOM05D006646 ORTHO05D008279 3.9e-08 62.0 64 53.1


User provided reference genes

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