Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung01280 Brassica carinata HOM05D008028 ORTHO05D010005 3.8e-44 181.4 112 100.0
BolC1t00039H Brassica oleracea HOM05D008028 ORTHO05D010005 3.8e-44 181.4 112 100.0
A01p00220 Brassica napus HOM05D008028 ORTHO05D010005 1.1e-43 179.9 112 99.1
BraA01t00029Z Brassica rapa HOM05D008028 ORTHO05D010005 9.3e-43 176.8 113 99.1
C01p00330 Brassica napus HOM05D008028 ORTHO05D010005 3.6e-42 174.9 114 97.4
Sp7g36720 Schrenkiella parvula HOM05D008028 ORTHO05D010005 4.1e-38 161.4 112 91.1
Thhalv10027119m.g Eutrema salsugineum HOM05D008028 ORTHO05D010005 3.8e-36 154.8 112 87.5
C03p77600 Brassica napus HOM05D001347 ORTHO05D001198 2.1e-34 149.1 109 88.1
BolC3t20017H Brassica oleracea HOM05D001347 ORTHO05D001198 2.1e-34 149.1 109 88.1
A08p23830 Brassica napus HOM05D001347 ORTHO05D001198 7.9e-34 147.1 109 80.7
BraA08t34335Z Brassica rapa HOM05D001347 ORTHO05D001198 7.9e-34 147.1 109 80.7
BcaC01g00281 Brassica carinata HOM05D001347 ORTHO05D001198 1.8e-33 146.0 109 86.2
BcaB03g12242 Brassica carinata HOM05D001347 ORTHO05D001198 4.4e-32 141.4 110 85.5
AL7G11040 Arabidopsis lyrata HOM05D008028 ORTHO05D010005 9.7e-32 140.2 109 87.2
Carub.0007s0098 Capsella rubella HOM05D008028 ORTHO05D010005 4.1e-30 134.8 101 87.1
Thecc.02G080100 Theobroma cacao HOM05D008028 ORTHO05D010005 4.1e-22 108.2 112 50.9
COL.COLO4_25993 Corchorus olitorius HOM05D008028 ORTHO05D010005 7.0e-22 107.5 112 49.1
Potri.009G120300 Populus trichocarpa HOM05D008028 ORTHO05D010005 1.5e-19 99.8 113 49.6
Sabra09G0092600 Salix brachista HOM05D008028 ORTHO05D010005 2.5e-19 99.0 113 49.6
Hma1.2p1_0066F.1_g036100 Hydrangea macrophylla HOM05D008028 ORTHO05D010005 6.1e-18 94.4 109 45.0
Gohir.A01G004200 Gossypium hirsutum HOM05D008028 ORTHO05D010005 1.4e-17 93.2 110 45.5
CiPaw.05G070000 Carya illinoinensis HOM05D008028 ORTHO05D010005 1.8e-17 92.8 107 44.9
MD05G1060500 Malus domestica HOM05D008028 ORTHO05D010005 1.8e-17 92.8 105 48.6
MD10G1068400 Malus domestica HOM05D008028 ORTHO05D010005 1.8e-17 92.8 105 47.6
Prupe.8G090300 Prunus persica HOM05D008028 ORTHO05D010005 1.8e-17 92.8 106 50.0
Dinv42036 Davidia involucrata HOM05D008028 ORTHO05D010005 8.8e-17 90.5 102 48.0
Manes.04G086850 Manihot esculenta HOM05D008028 ORTHO05D010005 8.8e-17 90.5 113 42.5
CsaV3_7G000150 Cucumis sativus L. HOM05D008028 ORTHO05D010005 1.5e-16 89.7 108 46.3
Sed0023664 Sechium edule HOM05D008028 ORTHO05D010005 1.5e-16 89.7 101 48.5
RcHm_v2.0_Chr6g0266031 Rosa chinensis HOM05D008028 ORTHO05D010005 2.0e-16 89.4 113 46.0
Sabra04G0106000 Salix brachista HOM05D000041 ORTHO05D010005 3.3e-16 88.6 112 45.5
Gohir.D01G004200 Gossypium hirsutum HOM05D008028 ORTHO05D010005 5.7e-16 87.8 110 43.6
Gorai.002G005100 Gossypium raimondii HOM05D008028 ORTHO05D010005 5.7e-16 87.8 110 43.6
GSVIVG01023830001 Vitis vinifera HOM05D008028 ORTHO05D010005 1.3e-15 86.7 107 43.9
ClCG02G004770 Citrullus lanatus HOM05D008028 ORTHO05D010005 2.2e-15 85.9 50 74.0
MELO3C029051.2 Cucumis melo HOM05D008028 ORTHO05D010005 2.2e-15 85.9 50 74.0
FAN27G0523 Fragaria x ananassa HOM05D008028 ORTHO05D010005 2.2e-15 85.9 104 47.1
Ciclev10029664m.g Citrus clementina HOM05D008028 ORTHO05D010005 2.8e-15 85.5 109 45.0
FAN20G2021 Fragaria x ananassa HOM05D008028 ORTHO05D010005 2.8e-15 85.5 113 44.2
FvH4_2g09740 Fragaria vesca HOM05D008028 ORTHO05D010005 4.8e-15 84.7 104 47.1
FAN24G2608 Fragaria x ananassa HOM05D008028 ORTHO05D010005 4.8e-15 84.7 104 47.1
FAN24G3146 Fragaria x ananassa HOM05D008028 ORTHO05D010005 4.8e-15 84.7 104 47.1
QL11p045140 Quercus lobata HOM05D008028 ORTHO05D010005 1.4e-14 83.2 102 42.2
QL11p045265 Quercus lobata HOM05D008028 ORTHO05D010005 1.4e-14 83.2 102 42.2
FAN15G3565 Fragaria x ananassa HOM05D008028 ORTHO05D010005 1.8e-14 82.8 104 46.2
TAR628G0762 Trochodendron aralioides HOM05D008028 ORTHO05D010005 1.8e-14 82.8 111 43.2
Nn1g05797 Nelumbo nucifera HOM05D008028 ORTHO05D010005 7.0e-14 80.9 108 45.4
Atru.chr5.3084 Acer truncatum HOM05D008028 ORTHO05D010005 1.2e-13 80.1 112 42.0
Nn5g29713 Nelumbo nucifera HOM05D008028 ORTHO05D010005 1.2e-13 80.1 112 38.4
CANSAT11G2137 Cannabis sativa HOM05D008028 ORTHO05D010005 3.5e-13 78.6 100 44.0
Eucgr.G01698 Eucalyptus grandis HOM05D008028 ORTHO05D010005 3.5e-13 78.6 113 40.7
Manes.11G091000 Manihot esculenta HOM05D008028 ORTHO05D010005 5.9e-13 77.8 54 64.8
PSO541G4922 Papaver somniferum HOM05D008028 ORTHO05D010005 1.3e-12 76.6 104 37.5
Cfa005059 Carpinus fangiana HOM05D008028 ORTHO05D010005 2.9e-12 75.5 114 43.0
Potri.004G158800 Populus trichocarpa HOM05D008028 ORTHO05D010005 6.5e-12 74.3 43 76.7
Glyma.04G009700 Glycine max HOM05D008028 ORTHO05D010005 1.1e-11 73.6 112 38.4
Haze_02324 Corylus avellana HOM05D008028 ORTHO05D010005 1.5e-11 73.2 104 42.3
Lj1g0026701 Lotus japonicus HOM05D008028 ORTHO05D010005 1.9e-11 72.8 117 38.5
CSS0001295 Camellia sinensis var. sinensis HOM05D008028 ORTHO05D010005 4.2e-11 71.6 105 42.9
CSS0038379 Camellia sinensis var. sinensis HOM05D008028 ORTHO05D010005 4.2e-11 71.6 105 42.9
EL10Ac9g21688 Beta vulgaris HOM05D008028 ORTHO05D010005 5.5e-11 71.2 113 38.1
arahy.Tifrunner.gnm1.ann1.JRR1U5 Arachis hypogaea HOM05D008028 ORTHO05D010005 7.2e-11 70.9 110 39.1
Phvul.009G004900 Phaseolus vulgaris HOM05D008028 ORTHO05D010005 6.1e-10 67.8 112 35.7
Actinidia00552 Actinidia chinensis HOM05D008028 ORTHO05D010005 1.4e-09 66.6 104 38.5
TPR.G32190 Trifolium pratense HOM05D008028 ORTHO05D010005 1.4e-09 66.6 117 35.9
Psat5g005320 Pisum sativum HOM05D008028 ORTHO05D010005 1.8e-09 66.2 112 38.4
vmacro17456 Vaccinium macrocarpon HOM05D008028 ORTHO05D010005 1.8e-09 66.2 106 36.8
Hma1.2p1_0851F.1_g228390 Hydrangea macrophylla HOM05D008028 ORTHO05D010005 2.3e-09 65.9 47 66.0
Hma1.2p1_2203F.1_g317070 Hydrangea macrophylla HOM05D008028 ORTHO05D010005 2.3e-09 65.9 47 66.0
Glyma.06G009600 Glycine max HOM05D008028 ORTHO05D010005 3.0e-09 65.5 113 36.3
AUR62011282 Chenopodium quinoa HOM05D008028 ORTHO05D010005 5.2e-09 64.7 44 65.9
Medtr3g117240 Medicago truncatula HOM05D008028 ORTHO05D010005 1.5e-08 63.2 113 37.2
Zm00001eb153780 Zea mays HOM05D002019 ORTHO05D010005 5.7e-08 61.2 46 54.3
Os01g0739500 Oryza sativa ssp. japonica HOM05D002019 ORTHO05D010005 7.5e-08 60.8 45 51.1
PSO675G1135 Papaver somniferum HOM05D008028 ORTHO05D010005 7.5e-08 60.8 49 55.1
Actinidia07487 Actinidia chinensis HOM05D008028 ORTHO05D010005 9.8e-08 60.5 45 62.2
arahy.Tifrunner.gnm1.ann1.04TBQJ Arachis hypogaea HOM05D008028 ORTHO05D010005 9.8e-08 60.5 96 40.6
Nn4g24832 Nelumbo nucifera HOM05D002019 ORTHO05D002150 9.8e-08 60.5 53 49.1
Rhsim11G0180600 Rhododendron simsii HOM05D008028 ORTHO05D010005 9.8e-08 60.5 47 57.4
Zm00001eb293570 Zea mays HOM05D002019 ORTHO05D010005 9.8e-08 60.5 45 53.3
Lalb_Chr23g0265241 Lupinus albus HOM05D008028 ORTHO05D010005 2.2e-07 59.3 115 43.5
SEGI_14454 Sequoiadendron giganteum HOM05D002019 ORTHO05D002150 2.2e-07 59.3 58 44.8
Dinv19090 Davidia involucrata HOM05D002019 ORTHO05D002150 2.8e-07 58.9 44 54.5
Actinidia17154 Actinidia chinensis HOM05D002019 ORTHO05D002150 4.8e-07 58.2 44 54.5
CiPaw.03G078600 Carya illinoinensis HOM05D002019 ORTHO05D002150 4.8e-07 58.2 44 56.8
Zm00001eb353580 Zea mays HOM05D002019 ORTHO05D010005 6.3e-07 57.8 46 54.3
MSTRG.15624 Avicennia marina HOM05D002019 ORTHO05D002150 8.3e-07 57.4 44 54.5
CDE05G2539 Ceratophyllum demersum HOM05D002019 ORTHO05D002150 8.3e-07 57.4 53 50.9
DCAR_014138 Daucus carota HOM05D002019 ORTHO05D002150 8.3e-07 57.4 44 56.8
SEGI_32080 Sequoiadendron giganteum HOM05D002019 ORTHO05D002150 8.3e-07 57.4 42 54.8
TWI74G0642 Tripterygium wilfordii HOM05D002019 ORTHO05D002150 8.3e-07 57.4 52 51.9
CSS0034970 Camellia sinensis var. sinensis HOM05D002019 ORTHO05D002150 1.1e-06 57.0 44 54.5
Actinidia40403 Actinidia chinensis HOM05D002019 ORTHO05D002150 1.4e-06 56.6 44 54.5
Aqoxy5G01545 Aquilegia oxysepala HOM05D008028 ORTHO05D010005 1.4e-06 56.6 47 57.4
CDE06G1698 Ceratophyllum demersum HOM05D008028 ORTHO05D010005 2.4e-06 55.8 46 52.2
GSVIVG01035279001 Vitis vinifera HOM05D002019 ORTHO05D002150 2.4e-06 55.8 43 55.8
Aqoxy3G04192 Aquilegia oxysepala HOM05D002019 ORTHO05D002150 3.1e-06 55.5 44 50.0
CDE03G0367 Ceratophyllum demersum HOM05D008028 ORTHO05D010005 3.1e-06 55.5 46 52.2
CDE06G2835 Ceratophyllum demersum HOM05D008028 ORTHO05D010005 3.1e-06 55.5 47 53.2
Atru.chr1.1979 Acer truncatum HOM05D002019 ORTHO05D002150 4.1e-06 55.1 44 52.3
Oeu012515.1 Olea europaea HOM05D002019 ORTHO05D002150 5.4e-06 54.7 44 54.5
TAR629G3490 Trochodendron aralioides HOM05D002019 ORTHO05D002150 5.4e-06 54.7 45 51.1
MBI03_g24044_MAGBIO Magnolia biondii HOM05D002019 ORTHO05D002150 9.1e-06 53.9 45 46.7


User provided reference genes

Program Settings