Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung01271 Brassica carinata HOM05D006766 ORTHO05D008534 7.7e-37 156.8 86 100.0
C01p00430 Brassica napus HOM05D006766 ORTHO05D008534 2.3e-33 145.2 80 100.0
BolC1t00048H Brassica oleracea HOM05D006766 ORTHO05D008534 2.3e-33 145.2 80 100.0
A01p00310 Brassica napus HOM05D006766 ORTHO05D008534 2.4e-30 135.2 80 96.2
BraA01t00038Z Brassica rapa HOM05D006766 ORTHO05D008534 2.4e-30 135.2 80 96.2
BcaNung03879 Brassica carinata HOM05D006766 ORTHO05D008534 2.5e-27 125.2 81 90.1
Sp7g36570 Schrenkiella parvula HOM05D006766 ORTHO05D008534 9.4e-27 123.2 80 90.0
AL7G11290 Arabidopsis lyrata HOM05D006766 ORTHO05D008534 3.6e-26 121.3 80 88.8
AT4G39300 Arabidopsis thaliana HOM05D006766 ORTHO05D008534 3.6e-26 121.3 80 88.8
A06p48570 Brassica napus HOM05D006766 ORTHO05D008534 4.7e-26 120.9 80 88.8
CARHR247400 Cardamine hirsuta HOM05D006766 ORTHO05D008534 3.0e-25 118.2 80 87.5
Carub.0007s0121 Capsella rubella HOM05D006766 ORTHO05D008534 4.4e-24 114.4 80 82.5
Thhalv10026662m.g Eutrema salsugineum HOM05D006766 ORTHO05D008534 2.8e-23 111.7 80 82.5
BcaNung02343 Brassica carinata HOM05D006766 ORTHO05D008534 1.1e-22 109.8 80 83.8
C07p63250 Brassica napus HOM05D006766 ORTHO05D008534 1.1e-22 109.8 80 83.8
BolC7t46735H Brassica oleracea HOM05D006766 ORTHO05D008534 1.1e-22 109.8 80 83.8
THA.LOC104824828 Tarenaya hassleriana HOM05D006766 ORTHO05D008534 1.6e-21 105.9 80 75.0
Aa31LG7G14800 Aethionema arabicum HOM05D006766 ORTHO05D008534 1.0e-17 93.2 80 67.5
Aa31LG6G15960 Aethionema arabicum HOM05D006766 ORTHO05D008534 1.8e-17 92.4 80 71.2
COL.COLO4_25930 Corchorus olitorius HOM05D006766 ORTHO05D008534 1.8e-14 82.4 81 60.5
Thecc.02G085300 Theobroma cacao HOM05D006766 ORTHO05D008534 1.6e-13 79.3 81 60.5
RcHm_v2.0_Chr6g0264231 Rosa chinensis HOM05D006766 ORTHO05D008534 2.7e-13 78.6 81 58.0
Ciclev10029674m.g Citrus clementina HOM05D006766 ORTHO05D008534 7.7e-13 77.0 80 56.2
TWI31G1395 Tripterygium wilfordii HOM05D006766 ORTHO05D008534 1.0e-12 76.6 80 57.5
Haze_02383 Corylus avellana HOM05D001555 ORTHO05D001616 1.3e-12 76.3 80 52.5
Duzib248G0712 Durio zibethinus HOM05D006766 ORTHO05D008534 1.3e-12 76.3 81 58.0
FvH4_2g08780 Fragaria vesca HOM05D006766 ORTHO05D008534 1.3e-12 76.3 81 58.0
FAN24G2015 Fragaria x ananassa HOM05D006766 ORTHO05D008534 1.3e-12 76.3 81 58.0
FAN27G0567 Fragaria x ananassa HOM05D006766 ORTHO05D008534 1.3e-12 76.3 81 58.0
Manes.17G101000 Manihot esculenta HOM05D006766 ORTHO05D008534 1.7e-12 75.9 81 53.1
GSVIVG01031965001 Vitis vinifera HOM05D006766 ORTHO05D008534 2.3e-12 75.5 80 53.8
Cfa005004 Carpinus fangiana HOM05D006766 ORTHO05D008534 2.9e-12 75.1 80 53.8
CiPaw.05G064400 Carya illinoinensis HOM05D006766 ORTHO05D008534 2.9e-12 75.1 78 55.1
Prupe.8G097200 Prunus persica HOM05D006766 ORTHO05D008534 3.8e-12 74.7 81 56.8
FAN15G0619 Fragaria x ananassa HOM05D006766 ORTHO05D008534 5.0e-12 74.3 81 56.8
FAN20G1934 Fragaria x ananassa HOM05D004333 ORTHO05D005363 4.2e-11 71.2 81 55.6
Gohir.D02G215600 Gossypium hirsutum HOM05D006766 ORTHO05D008534 4.2e-11 71.2 81 54.3
Cpa.g.sc62.150 Carica papaya HOM05D006766 ORTHO05D008534 5.5e-11 70.9 80 53.8
Duzib052G0491 Durio zibethinus HOM05D006766 ORTHO05D008534 7.2e-11 70.5 80 52.5
Sabra04G0102700 Salix brachista HOM05D006766 ORTHO05D008534 9.5e-11 70.1 80 51.2
MD10G1076400 Malus domestica HOM05D006766 ORTHO05D008534 1.2e-10 69.7 81 54.3
Eucgr.I01270 Eucalyptus grandis HOM05D006766 ORTHO05D008534 1.6e-10 69.3 80 52.5
MD10G1031700 Malus domestica HOM05D006766 ORTHO05D008534 3.6e-10 68.2 81 53.1
Gohir.A12G028700 Gossypium hirsutum HOM05D006766 ORTHO05D008534 4.7e-10 67.8 80 51.2
Gohir.D12G028200 Gossypium hirsutum HOM05D006766 ORTHO05D008534 4.7e-10 67.8 80 51.2
Gorai.008G028800 Gossypium raimondii HOM05D006766 ORTHO05D008534 4.7e-10 67.8 80 51.2
Gohir.A03G194400 Gossypium hirsutum HOM05D006766 ORTHO05D008534 8.0e-10 67.0 81 50.6
HanXRQChr10g0307051 Helianthus annuus HOM05D006766 ORTHO05D008534 1.8e-09 65.9 87 48.3
Lsat_1_v5_gn_5_118560 Lactuca sativa HOM05D006766 ORTHO05D008534 1.8e-09 65.9 85 48.2
CSS0023455 Camellia sinensis var. sinensis HOM05D006766 ORTHO05D008534 2.3e-09 65.5 82 54.9
Lsat_1_v5_gn_7_89221 Lactuca sativa HOM05D006766 ORTHO05D008534 3.0e-09 65.1 85 49.4
Atru.chr5.3014 Acer truncatum HOM05D006766 ORTHO05D008534 4.0e-09 64.7 72 51.4
QL12p018934 Quercus lobata HOM05D006766 ORTHO05D008534 5.2e-09 64.3 85 54.1
Actinidia27896 Actinidia chinensis HOM05D006766 ORTHO05D008534 8.9e-09 63.5 81 50.6
Hma1.2p1_0066F.1_g036420 Hydrangea macrophylla HOM05D006766 ORTHO05D008534 8.9e-09 63.5 81 49.4
Sed0007595 Sechium edule HOM05D006766 ORTHO05D008534 1.5e-08 62.8 81 45.7
Sed0021705 Sechium edule HOM05D006766 ORTHO05D008534 2.0e-08 62.4 81 48.1
Nn5g30294 Nelumbo nucifera HOM05D006766 ORTHO05D008534 2.6e-08 62.0 80 45.0
ClCG02G005020 Citrullus lanatus HOM05D006766 ORTHO05D008534 3.4e-08 61.6 81 48.1
PGR142G1230 Punica granatum HOM05D006766 ORTHO05D008534 3.4e-08 61.6 80 47.5
Potri.004G154800 Populus trichocarpa HOM05D006766 ORTHO05D008534 5.7e-08 60.8 81 48.1
ECA234G2659 Erigeron canadensis HOM05D006766 ORTHO05D008534 7.5e-08 60.5 81 50.6
vmacro02108 Vaccinium macrocarpon HOM05D006766 ORTHO05D008534 7.5e-08 60.5 80 48.8
Hma1.2p1_0633F.1_g192560 Hydrangea macrophylla HOM05D006766 ORTHO05D008534 9.8e-08 60.1 81 49.4
Actinidia08228 Actinidia chinensis HOM05D006766 ORTHO05D008534 1.3e-07 59.7 77 49.4
CSS0001017 Camellia sinensis var. sinensis HOM05D006766 ORTHO05D008534 1.3e-07 59.7 79 53.2
TAR381G1290 Trochodendron aralioides HOM05D006766 ORTHO05D008534 1.7e-07 59.3 80 43.8
Lsat_1_v5_gn_9_70521 Lactuca sativa HOM05D006766 ORTHO05D008534 2.2e-07 58.9 81 50.6
arahy.Tifrunner.gnm1.ann1.0D280N Arachis hypogaea HOM05D006766 ORTHO05D008534 8.3e-07 57.0 77 44.2
arahy.Tifrunner.gnm1.ann1.PI6USP Arachis hypogaea HOM05D006766 ORTHO05D008534 8.3e-07 57.0 77 44.2
RcHm_v2.0_Chr5g0010131 Rosa chinensis HOM05D006766 ORTHO05D008534 8.3e-07 57.0 80 43.8
Nn1g04840 Nelumbo nucifera HOM05D006766 ORTHO05D008534 1.1e-06 56.6 80 45.0
Lj3g0004404 Lotus japonicus HOM05D006766 ORTHO05D008534 1.4e-06 56.2 82 50.0
Cc02_g17570 Coffea canephora HOM05D006766 ORTHO05D008534 1.8e-06 55.8 82 47.6
Potri.009G115900 Populus trichocarpa HOM05D006766 ORTHO05D008534 2.4e-06 55.5 80 45.0
Lalb_Chr03g0025701 Lupinus albus HOM05D006766 ORTHO05D008534 9.2e-06 53.5 77 45.5
Sc18g0004470 Simmondsia chinensis HOM05D006766 ORTHO05D008534 9.2e-06 53.5 80 43.8


User provided reference genes

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