Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung01159 Brassica carinata HOM05D005483 ORTHO05D006924 0.0e+00 2137.5 1119 100.0
Sp6g30630 Schrenkiella parvula HOM05D005483 ORTHO05D006924 0.0e+00 2038.5 1124 93.9
BolC2t06551H Brassica oleracea HOM05D005483 ORTHO05D006924 0.0e+00 2019.2 1119 94.0
Thhalv10012499m.g Eutrema salsugineum HOM05D005483 ORTHO05D006924 0.0e+00 2018.8 1124 93.3
AL6G24010 Arabidopsis lyrata HOM05D005483 ORTHO05D006924 0.0e+00 2007.3 1124 92.3
AT5G13390 Arabidopsis thaliana HOM05D005483 ORTHO05D006924 0.0e+00 2001.5 1124 92.2
Carub.0006s1155 Capsella rubella HOM05D005483 ORTHO05D006924 0.0e+00 1995.7 1124 91.4
BraA02t05161Z Brassica rapa HOM05D005483 ORTHO05D006924 0.0e+00 1986.5 1120 93.0
A02p01880 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 1986.1 1120 93.0
BcaNung01880 Brassica carinata HOM05D005483 ORTHO05D006924 0.0e+00 1978.4 1119 93.0
A10p24830 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 1976.4 1128 91.8
BraA10t44547Z Brassica rapa HOM05D005483 ORTHO05D006924 0.0e+00 1975.3 1128 91.7
BolC9t59209H Brassica oleracea HOM05D005483 ORTHO05D006924 0.0e+00 1974.5 1128 91.8
C09p63680 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 1971.4 1128 91.6
C02p06100 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 1963.7 1119 92.1
CARHR200040 Cardamine hirsuta HOM05D005483 ORTHO05D006924 0.0e+00 1945.6 1124 90.2
Aa31LG3G14260 Aethionema arabicum HOM05D005483 ORTHO05D006924 0.0e+00 1919.8 1137 87.5
BcaC04g19119 Brassica carinata HOM05D005483 ORTHO05D006924 0.0e+00 1823.1 1141 85.7
THA.LOC104825454 Tarenaya hassleriana HOM05D005483 ORTHO05D006924 0.0e+00 1822.4 1128 83.8
Thecc.02G190700 Theobroma cacao HOM05D005483 ORTHO05D006924 0.0e+00 1646.3 1134 73.8
Cpa.g.sc38.68 Carica papaya HOM05D005483 ORTHO05D006924 0.0e+00 1632.1 1131 73.9
Duzib052G0599 Durio zibethinus HOM05D005483 ORTHO05D006924 0.0e+00 1630.9 1145 72.8
Manes.08G100200 Manihot esculenta HOM05D005483 ORTHO05D006924 0.0e+00 1630.9 1129 73.2
Gohir.A01G020200 Gossypium hirsutum HOM05D005483 ORTHO05D006924 0.0e+00 1628.6 1139 73.0
Gorai.002G021000 Gossypium raimondii HOM05D005483 ORTHO05D006924 0.0e+00 1628.6 1153 72.2
Gohir.D01G018800 Gossypium hirsutum HOM05D005483 ORTHO05D006924 0.0e+00 1625.5 1154 72.1
Duzib248G1306 Durio zibethinus HOM05D005483 ORTHO05D006924 0.0e+00 1622.4 1141 73.0
GSVIVG01001111001 Vitis vinifera HOM05D005483 ORTHO05D006924 0.0e+00 1621.3 1127 73.5
Ciclev10004203m.g Citrus clementina HOM05D005483 ORTHO05D006924 0.0e+00 1618.2 1132 72.2
TWI18G1022 Tripterygium wilfordii HOM05D005483 ORTHO05D006924 0.0e+00 1613.2 1133 72.3
PGR119G2201 Punica granatum HOM05D005483 ORTHO05D006924 0.0e+00 1606.7 1140 72.3
Dinv17529 Davidia involucrata HOM05D005483 ORTHO05D006924 0.0e+00 1605.9 1134 71.5
RcHm_v2.0_Chr4g0428701 Rosa chinensis HOM05D005483 ORTHO05D006924 0.0e+00 1601.6 1130 71.4
CANSAT01G1825 Cannabis sativa HOM05D005483 ORTHO05D006924 0.0e+00 1599.7 1129 71.6
FAN07G1779 Fragaria x ananassa HOM05D005483 ORTHO05D006924 0.0e+00 1596.3 1127 71.7
FvH4_4g22440 Fragaria vesca HOM05D005483 ORTHO05D006924 0.0e+00 1595.9 1127 71.9
FAN12G1583 Fragaria x ananassa HOM05D005483 ORTHO05D006924 0.0e+00 1592.4 1127 71.7
FAN17G2071 Fragaria x ananassa HOM05D005483 ORTHO05D006924 0.0e+00 1590.5 1127 71.3
Prupe.1G213300 Prunus persica HOM05D005483 ORTHO05D006924 0.0e+00 1587.4 1127 71.1
Potri.003G161400 Populus trichocarpa HOM05D005483 ORTHO05D006924 0.0e+00 1584.3 1129 71.5
MD16G1142500 Malus domestica HOM05D005483 ORTHO05D006924 0.0e+00 1579.7 1124 70.7
Sabra03G0117300 Salix brachista HOM05D005483 ORTHO05D006924 0.0e+00 1577.8 1181 69.1
Potri.001G068900 Populus trichocarpa HOM05D005483 ORTHO05D006924 0.0e+00 1576.6 1125 71.8
Hma1.2p1_1494F.1_g286890 Hydrangea macrophylla HOM05D005483 ORTHO05D006924 0.0e+00 1575.8 1127 70.3
TWI36G1286 Tripterygium wilfordii HOM05D005483 ORTHO05D006924 0.0e+00 1575.5 1134 70.1
CSS0020507 Camellia sinensis var. sinensis HOM05D005483 ORTHO05D006924 0.0e+00 1570.8 1144 69.8
Actinidia30577 Actinidia chinensis HOM05D005483 ORTHO05D006924 0.0e+00 1563.1 1129 69.8
QL03p048748 Quercus lobata HOM05D005483 ORTHO05D006924 0.0e+00 1562.4 1136 69.9
CsaV3_4G002140 Cucumis sativus L. HOM05D005483 ORTHO05D006924 0.0e+00 1560.8 1135 70.5
MELO3C017824.2 Cucumis melo HOM05D005483 ORTHO05D006924 0.0e+00 1559.3 1136 70.6
Peaxi162Scf00842g00430 Petunia axillaris HOM05D005483 ORTHO05D006924 0.0e+00 1559.3 1124 69.9
TAR622G1101 Trochodendron aralioides HOM05D005483 ORTHO05D006924 0.0e+00 1558.5 1121 70.1
Haze_12514 Corylus avellana HOM05D005483 ORTHO05D006924 0.0e+00 1557.3 1129 70.4
Cfa009459 Carpinus fangiana HOM05D005483 ORTHO05D006924 0.0e+00 1554.7 1134 70.5
Sopen11g017110 Solanum pennellii HOM05D005483 ORTHO05D006924 0.0e+00 1551.6 1127 69.0
Sed0020947 Sechium edule HOM05D005483 ORTHO05D006924 0.0e+00 1550.8 1133 69.7
Solyc11g033282.1 Solanum lycopersicum HOM05D005483 ORTHO05D006924 0.0e+00 1548.1 1127 69.0
MSTRG.445 Avicennia marina HOM05D005483 ORTHO05D006924 0.0e+00 1542.3 1135 67.9
Cc11_g14910 Coffea canephora HOM05D005483 ORTHO05D006924 0.0e+00 1537.3 1138 69.2
CiPaw.06G110300 Carya illinoinensis HOM05D005483 ORTHO05D006924 0.0e+00 1535.4 1138 69.5
HanXRQChr17g0540341 Helianthus annuus HOM05D005483 ORTHO05D006924 0.0e+00 1530.4 1140 67.9
ECA246G4063 Erigeron canadensis HOM05D005483 ORTHO05D006924 0.0e+00 1525.8 1121 68.3
Lsat_1_v5_gn_3_32540 Lactuca sativa HOM05D005483 ORTHO05D006924 0.0e+00 1523.8 1127 68.6
Nn4g22102 Nelumbo nucifera HOM05D005483 ORTHO05D006924 0.0e+00 1523.8 1126 68.4
Rhsim12G0016200 Rhododendron simsii HOM05D005483 ORTHO05D006924 0.0e+00 1523.8 1137 67.8
ClCG07G012020 Citrullus lanatus HOM05D005483 ORTHO05D006924 0.0e+00 1520.4 1105 70.3
vmacro01010 Vaccinium macrocarpon HOM05D005483 ORTHO05D006924 0.0e+00 1515.4 1136 67.8
Migut.K01044 Erythranthe guttata HOM05D005483 ORTHO05D006924 0.0e+00 1514.6 1143 67.5
MD13G1132200 Malus domestica HOM05D005483 ORTHO05D006924 0.0e+00 1510.4 1124 68.3
Sed0017746 Sechium edule HOM05D005483 ORTHO05D006924 0.0e+00 1508.8 1125 68.6
SGA_v2.0_scaffold258G45771 Striga asiatica HOM05D005483 ORTHO05D006924 0.0e+00 1505.3 1140 67.0
MSTRG.8060 Avicennia marina HOM05D005483 ORTHO05D006924 0.0e+00 1504.2 1137 67.1
Nn3g16247 Nelumbo nucifera HOM05D005483 ORTHO05D006924 0.0e+00 1503.0 1126 68.7
Glyma.08G363300 Glycine max HOM05D005483 ORTHO05D006924 0.0e+00 1493.4 1124 68.2
Phvul.008G003900 Phaseolus vulgaris HOM05D005483 ORTHO05D006924 0.0e+00 1492.6 1071 70.3
AUR62028835 Chenopodium quinoa HOM05D005483 ORTHO05D006924 0.0e+00 1490.3 1128 68.2
SalBow2G2141 Salvia bowleyana HOM05D005483 ORTHO05D006924 0.0e+00 1489.2 1137 66.3
COL.COLO4_08434 Corchorus olitorius HOM05D005483 ORTHO05D006924 0.0e+00 1487.2 1011 75.8
PSO017G1761 Papaver somniferum HOM05D005483 ORTHO05D006924 0.0e+00 1485.3 1127 66.5
Sc11g0000050 Simmondsia chinensis HOM05D005483 ORTHO05D006924 0.0e+00 1483.4 1139 66.1
Glyma.18G298700 Glycine max HOM05D005483 ORTHO05D006924 0.0e+00 1481.8 1122 67.5
PSO478G1749 Papaver somniferum HOM05D005483 ORTHO05D006924 0.0e+00 1481.5 1127 66.5
HanXRQChr06g0175451 Helianthus annuus HOM05D005483 ORTHO05D006924 0.0e+00 1473.0 1126 66.3
Lalb_Chr10g0091131 Lupinus albus HOM05D005483 ORTHO05D006924 0.0e+00 1470.7 1123 67.6
Sabra01G0048200 Salix brachista HOM05D005483 ORTHO05D006924 0.0e+00 1465.7 1030 71.5
TPR.G9702 Trifolium pratense HOM05D005483 ORTHO05D006924 0.0e+00 1464.5 1078 68.7
Aqoxy5G03055 Aquilegia oxysepala HOM05D005483 ORTHO05D006924 0.0e+00 1458.7 1136 65.9
arahy.Tifrunner.gnm1.ann1.H63XD7 Arachis hypogaea HOM05D005483 ORTHO05D006924 0.0e+00 1457.6 1147 65.4
arahy.Tifrunner.gnm1.ann1.N4LA1V Arachis hypogaea HOM05D005483 ORTHO05D006924 0.0e+00 1457.6 1147 65.4
Lj1g0002578 Lotus japonicus HOM05D005483 ORTHO05D006924 0.0e+00 1454.5 1130 66.0
EL10Ac2g02397 Beta vulgaris HOM05D005483 ORTHO05D006924 0.0e+00 1453.0 1124 65.8
Ah.03g135500 Amaranthus hybridus HOM05D005483 ORTHO05D006924 0.0e+00 1444.5 1100 67.6
Ca_04087_v3 Cicer arietinum L. HOM05D005483 ORTHO05D006924 0.0e+00 1422.5 1077 67.3
VMungo1383G1684 Vigna mungo HOM05D005483 ORTHO05D006924 0.0e+00 1417.5 1069 68.0
Psat3g206760 Pisum sativum HOM05D005483 ORTHO05D006924 0.0e+00 1411.0 1035 68.4
Eucgr.G01983 Eucalyptus grandis HOM05D005483 ORTHO05D006924 0.0e+00 1349.3 925 73.2
AUR62005722 Chenopodium quinoa HOM05D005483 ORTHO05D006924 0.0e+00 1343.2 1133 63.0
Medtr7g006760 Medicago truncatula HOM05D005483 ORTHO05D006924 0.0e+00 1342.0 1074 64.4
HPP92_020112 Vanilla planifolia HOM05D005483 ORTHO05D006924 0.0e+00 1322.8 1071 62.2
MBI11_g02503_MAGBIO Magnolia biondii HOM05D005483 ORTHO05D006924 0.0e+00 1318.5 1042 64.9
Lj6C839G6 Lonicera japonica HOM05D005483 ORTHO05D006924 0.0e+00 1315.8 929 70.5
SEGI_17725 Sequoiadendron giganteum HOM05D005483 ORTHO05D006924 0.0e+00 1265.8 1116 57.6
ATR0582G070 Amborella trichopoda HOM05D005483 ORTHO05D006924 0.0e+00 1252.3 1109 57.7
Medtr7g406760 Medicago truncatula HOM05D005483 ORTHO05D006924 0.0e+00 1233.4 894 69.7
Atru.chr12.1443 Acer truncatum HOM05D005483 ORTHO05D006924 0.0e+00 1188.3 822 73.4
TAR374G0614 Trochodendron aralioides HOM05D005483 ORTHO05D006924 0.0e+00 1188.3 886 67.3
CDE05G0204 Ceratophyllum demersum HOM05D005483 ORTHO05D006924 0.0e+00 1111.3 918 62.0
Pp3c14_23090 Physcomitrium patens HOM05D005483 ORTHO05D006924 0.0e+00 1081.6 1077 52.2
CSS0027672 Camellia sinensis var. sinensis HOM05D005483 ORTHO05D006924 0.0e+00 1076.6 786 69.7
Mapoly0029s0137 Marchantia polymorpha HOM05D005483 ORTHO05D006924 1.1e-305 1053.5 1089 50.3
AagrBONN_evm.TU.Sc2ySwM_228.3500 Anthoceros agrestis HOM05D005483 ORTHO05D006924 1.1e-297 1026.9 1075 50.0
SMO116G0229 Selaginella moellendorffii HOM05D005483 ORTHO05D006924 7.9e-283 977.6 1080 47.9
DCAR_026441 Daucus carota HOM05D005483 ORTHO05D006924 4.3e-273 945.3 673 70.1
unitig_22.g6373 Utricularia gibba HOM05D005483 ORTHO05D006924 8.8e-266 921.0 759 62.6
Nitab4.5_0002569g0090 Nicotiana tabacum HOM05D005483 ORTHO05D006924 6.5e-237 825.1 600 69.7
CDE05G1761 Ceratophyllum demersum HOM05D005483 ORTHO05D006924 1.4e-234 817.4 905 51.3
CBR_g38877 Chara braunii HOM05D005483 ORTHO05D006924 6.0e-214 748.8 1099 40.3
Zm00001eb113290 Zea mays HOM05D005483 ORTHO05D006924 3.1e-210 736.5 616 60.6
RcHm_v2.0_Chr4g0402251 Rosa chinensis HOM05D005483 ORTHO05D006924 1.8e-157 561.2 366 75.4
Hma1.2p1_1494F.1_g286880 Hydrangea macrophylla HOM05D005483 ORTHO05D006924 9.4e-143 512.3 421 64.4
DCAR_026440 Daucus carota HOM05D005483 ORTHO05D006924 1.4e-130 471.9 430 58.4
Os11g0528200 Oryza sativa ssp. japonica HOM05D005483 ORTHO05D006924 7.5e-108 396.4 358 57.0
Cre01.g018050 Chlamydomonas reinhardtii HOM05D005483 ORTHO05D006924 2.6e-100 371.3 1208 27.2
unitig_22.g6372 Utricularia gibba HOM05D005483 ORTHO05D006924 3.4e-92 344.4 316 57.3
MCO16G196 Micromonas commoda HOM05D005483 ORTHO05D006924 5.4e-90 337.0 1174 26.7
Actinidia22108 Actinidia chinensis HOM05D005483 ORTHO05D006924 1.1e-79 302.8 332 55.1
Actinidia22109 Actinidia chinensis HOM05D005483 ORTHO05D006924 7.3e-71 273.5 315 51.1
SEGI_02355 Sequoiadendron giganteum HOM05D005483 ORTHO05D006924 3.6e-70 271.2 365 43.6
Oeu011729.2 Olea europaea HOM05D005483 ORTHO05D000122 1.3e-64 252.7 333 46.2
SGA_v2.0_scaffold98G29280 Striga asiatica HOM05D005483 ORTHO05D007482 5.4e-58 230.7 320 45.6
RcHm_v2.0_Chr6g0278911 Rosa chinensis HOM05D005483 ORTHO05D006924 1.5e-31 142.9 106 73.6
Lj6C839G5 Lonicera japonica HOM05D005483 ORTHO05D006924 2.2e-30 139.0 150 57.3
DCAR_029048 Daucus carota HOM05D005483 ORTHO05D006924 8.5e-27 127.1 114 66.7
Pp3c1_41760 Physcomitrium patens HOM05D005483 ORTHO05D006924 4.2e-26 124.8 666 22.2
RcHm_v2.0_Chr5g0056851 Rosa chinensis HOM05D005483 ORTHO05D006924 7.2e-26 124.0 70 78.6
RcHm_v2.0_Chr2g0133761 Rosa chinensis HOM05D005483 ORTHO05D006924 1.6e-25 122.9 86 77.9
RcHm_v2.0_Chr7g0226991 Rosa chinensis HOM05D005483 ORTHO05D006924 2.7e-25 122.1 68 79.4
RcHm_v2.0_Chr2g0126951 Rosa chinensis HOM05D005483 ORTHO05D006924 1.1e-23 116.7 86 74.4
Lj2g0025677 Lotus japonicus HOM05D005483 ORTHO05D007091 3.4e-07 62.0 79 41.8


User provided reference genes

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