Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung01156 Brassica carinata HOM05D002468 ORTHO05D005371 4.4e-209 731.1 385 100.0
C02p06130 Brassica napus HOM05D002468 ORTHO05D005371 1.6e-198 696.0 390 95.9
BolC2t06554H Brassica oleracea HOM05D002468 ORTHO05D005371 1.6e-198 696.0 390 95.9
A10p24820 Brassica napus HOM05D002468 ORTHO05D005371 1.9e-191 672.5 390 90.0
BraA10t44546Z Brassica rapa HOM05D002468 ORTHO05D005371 1.9e-191 672.5 390 90.8
BcaC04g19118 Brassica carinata HOM05D002468 ORTHO05D005371 3.2e-191 671.8 390 92.6
C09p63670 Brassica napus HOM05D002468 ORTHO05D005371 1.3e-189 666.4 390 89.7
BolC9t59208H Brassica oleracea HOM05D002468 ORTHO05D005371 1.3e-189 666.4 390 89.7
A02p01910 Brassica napus HOM05D002468 ORTHO05D005371 1.7e-189 666.0 390 92.3
BraA02t05164Z Brassica rapa HOM05D002468 ORTHO05D005371 1.7e-189 666.0 390 92.3
Thhalv10013572m.g Eutrema salsugineum HOM05D002468 ORTHO05D005371 8.1e-187 657.1 390 88.5
Sp6g30600 Schrenkiella parvula HOM05D002468 ORTHO05D005371 1.8e-186 656.0 392 90.8
A03p05960 Brassica napus HOM05D002468 ORTHO05D005371 1.9e-183 646.0 390 86.4
BraA03t09933Z Brassica rapa HOM05D002468 ORTHO05D005371 1.9e-183 646.0 390 86.4
C03p07000 Brassica napus HOM05D002468 ORTHO05D005371 3.5e-182 641.7 390 86.2
BolC3t13199H Brassica oleracea HOM05D002468 ORTHO05D005371 3.5e-182 641.7 390 86.2
Carub.0006s1158 Capsella rubella HOM05D002468 ORTHO05D005371 1.9e-180 636.0 392 86.5
AT5G13420 Arabidopsis thaliana HOM05D002468 ORTHO05D005371 9.6e-180 633.6 390 86.4
AL6G24040 Arabidopsis lyrata HOM05D002468 ORTHO05D005371 2.4e-178 629.0 390 86.4
CARHR200010 Cardamine hirsuta HOM05D002468 ORTHO05D005371 5.5e-175 617.8 390 84.6
BcaB01g05361 Brassica carinata HOM05D002468 ORTHO05D005371 3.5e-166 588.6 390 81.0
THA.LOC104807252 Tarenaya hassleriana HOM05D002468 ORTHO05D005371 4.6e-166 588.2 394 80.7
Thecc.02G191400 Theobroma cacao HOM05D002468 ORTHO05D005371 2.3e-165 585.9 393 79.4
Atru.chr12.1428 Acer truncatum HOM05D002468 ORTHO05D005371 6.7e-165 584.3 392 78.3
Gohir.A04G101700 Gossypium hirsutum HOM05D002468 ORTHO05D005371 1.9e-164 582.8 392 79.6
Cpa.g.sc38.67 Carica papaya HOM05D002468 ORTHO05D005371 4.3e-164 581.6 392 79.3
Manes.08G100600 Manihot esculenta HOM05D002468 ORTHO05D005371 4.3e-164 581.6 392 78.1
MD16G1141700 Malus domestica HOM05D002468 ORTHO05D005371 7.4e-164 580.9 394 79.7
Duzib132G1053 Durio zibethinus HOM05D002468 ORTHO05D005371 1.6e-163 579.7 392 78.3
Eucgr.G01978 Eucalyptus grandis HOM05D002468 ORTHO05D005371 1.6e-163 579.7 393 78.1
Ciclev10004979m.g Citrus clementina HOM05D002468 ORTHO05D005371 2.8e-163 578.9 393 78.4
Gohir.D04G140900 Gossypium hirsutum HOM05D002468 ORTHO05D005371 2.8e-163 578.9 392 79.3
Gorai.012G125900 Gossypium raimondii HOM05D002468 ORTHO05D005371 4.8e-163 578.2 392 79.1
Prupe.1G214200 Prunus persica HOM05D002468 ORTHO05D005371 1.1e-162 577.0 393 78.6
Duzib052G0101 Durio zibethinus HOM05D002468 ORTHO05D005371 1.4e-162 576.6 392 78.1
Potri.001G068200 Populus trichocarpa HOM05D002468 ORTHO05D005371 1.4e-162 576.6 393 78.1
Sabra03G0117600 Salix brachista HOM05D002468 ORTHO05D005371 1.4e-162 576.6 389 78.1
arahy.Tifrunner.gnm1.ann1.PCZ0HW Arachis hypogaea HOM05D002468 ORTHO05D005371 2.4e-162 575.9 392 77.8
arahy.Tifrunner.gnm1.ann1.S6Z2J3 Arachis hypogaea HOM05D002468 ORTHO05D005371 2.4e-162 575.9 392 77.8
MD13G1131400 Malus domestica HOM05D002468 ORTHO05D005371 2.4e-162 575.9 395 78.5
MELO3C017817.2 Cucumis melo HOM05D002468 ORTHO05D005371 1.2e-161 573.5 390 77.9
CiPaw.06G109900 Carya illinoinensis HOM05D002468 ORTHO05D005371 2.0e-161 572.8 397 77.6
FvH4_4g22560 Fragaria vesca HOM05D002468 ORTHO05D005371 2.0e-161 572.8 395 78.2
Manes.09G188600 Manihot esculenta HOM05D002468 ORTHO05D005371 4.5e-161 571.6 392 77.3
RcHm_v2.0_Chr4g0428801 Rosa chinensis HOM05D002468 ORTHO05D005371 4.5e-161 571.6 393 77.9
Sed0000476 Sechium edule HOM05D002468 ORTHO05D005371 4.5e-161 571.6 394 78.7
CsaV3_4G002210 Cucumis sativus L. HOM05D002468 ORTHO05D005371 5.9e-161 571.2 393 78.1
FAN07G2580 Fragaria x ananassa HOM05D002468 ORTHO05D005371 5.9e-161 571.2 395 77.7
TAR629G1443 Trochodendron aralioides HOM05D002468 ORTHO05D005371 5.9e-161 571.2 392 77.3
ClCG07G011940 Citrullus lanatus HOM05D002468 ORTHO05D005371 7.6e-161 570.9 392 78.3
Aqoxy5G03074 Aquilegia oxysepala HOM05D002468 ORTHO05D005371 1.0e-160 570.5 392 77.3
Actinidia30583 Actinidia chinensis HOM05D002468 ORTHO05D005371 1.3e-160 570.1 391 78.3
CANSAT01G0579 Cannabis sativa HOM05D002468 ORTHO05D005371 1.3e-160 570.1 397 77.3
FAN12G2192 Fragaria x ananassa HOM05D002468 ORTHO05D005371 1.7e-160 569.7 389 78.4
QL03p049039 Quercus lobata HOM05D002468 ORTHO05D005371 2.2e-160 569.3 393 77.6
PGR119G1329 Punica granatum HOM05D002468 ORTHO05D005371 3.8e-160 568.5 394 76.9
Rhsim12G0017100 Rhododendron simsii HOM05D002468 ORTHO05D005371 5.0e-160 568.2 394 77.9
FAN17G0051 Fragaria x ananassa HOM05D002468 ORTHO05D005371 8.5e-160 567.4 395 77.5
TWI36G1422 Tripterygium wilfordii HOM05D002468 ORTHO05D005371 1.4e-159 566.6 397 76.1
AUR62005716 Chenopodium quinoa HOM05D002468 ORTHO05D005371 3.2e-159 565.5 352 82.1
AUR62028839 Chenopodium quinoa HOM05D002468 ORTHO05D005371 3.2e-159 565.5 352 82.1
Phvul.008G003600 Phaseolus vulgaris HOM05D002468 ORTHO05D005371 3.2e-159 565.5 394 76.6
Sed0003563 Sechium edule HOM05D002468 ORTHO05D005371 4.2e-159 565.1 390 77.7
Glyma.08G362900 Glycine max HOM05D002468 ORTHO05D005371 5.5e-159 564.7 390 77.4
Aa31LG3G14290 Aethionema arabicum HOM05D002468 ORTHO05D005371 9.3e-159 563.9 443 70.2
Sc11g0000080 Simmondsia chinensis HOM05D002468 ORTHO05D005371 1.2e-158 563.5 396 75.8
TWI18G0725 Tripterygium wilfordii HOM05D002468 ORTHO05D005371 1.2e-158 563.5 397 76.1
CiPaw.05G100700 Carya illinoinensis HOM05D002468 ORTHO05D005371 1.6e-158 563.1 389 76.3
Hund14581 Selenicereus undatus HOM05D002468 ORTHO05D005371 1.6e-158 563.1 314 88.9
TAR371G0123 Trochodendron aralioides HOM05D002468 ORTHO05D005371 1.6e-158 563.1 355 81.4
Cfa009455 Carpinus fangiana HOM05D002468 ORTHO05D005371 2.7e-158 562.4 393 76.8
Cc11_g14960 Coffea canephora HOM05D002468 ORTHO05D005371 3.6e-158 562.0 395 77.5
Oeu010257.1 Olea europaea HOM05D002468 ORTHO05D005371 3.6e-158 562.0 347 83.0
Lsat_1_v5_gn_3_32661 Lactuca sativa HOM05D002468 ORTHO05D005371 4.6e-158 561.6 393 77.9
CSS0032961 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 6.1e-158 561.2 390 77.2
Haze_12509 Corylus avellana HOM05D002468 ORTHO05D005371 6.1e-158 561.2 393 76.6
VMungo1383G1406 Vigna mungo HOM05D002468 ORTHO05D005371 6.1e-158 561.2 394 76.1
CSS0030444 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 7.9e-158 560.8 390 77.2
HanXRQChr17g0540381 Helianthus annuus HOM05D002468 ORTHO05D005371 7.9e-158 560.8 394 77.4
DCAR_024636 Daucus carota HOM05D002468 ORTHO05D005371 1.3e-157 560.1 347 83.6
GSVIVG01001098001 Vitis vinifera HOM05D002468 ORTHO05D005371 1.3e-157 560.1 392 76.3
ECA246G0169 Erigeron canadensis HOM05D002468 ORTHO05D005371 1.8e-157 559.7 390 76.9
MSTRG.449 Avicennia marina HOM05D002468 ORTHO05D005371 3.9e-157 558.5 393 75.8
Dinv17539 Davidia involucrata HOM05D002468 ORTHO05D005371 5.1e-157 558.1 392 76.8
Glyma.18G299100 Glycine max HOM05D002468 ORTHO05D005371 5.1e-157 558.1 390 76.4
Dinv03336 Davidia involucrata HOM05D002468 ORTHO05D005371 6.7e-157 557.8 394 76.4
Lj1g0025256 Lotus japonicus HOM05D002468 ORTHO05D005371 8.7e-157 557.4 390 76.2
MBI07_g35982_MAGBIO Magnolia biondii HOM05D002468 ORTHO05D005371 1.1e-156 557.0 390 75.9
EL10Ac6g13612 Beta vulgaris HOM05D002468 ORTHO05D005371 2.5e-156 555.8 360 79.7
PSO017G4233 Papaver somniferum HOM05D002468 ORTHO05D005371 3.3e-156 555.4 389 76.9
Ah.03g135540 Amaranthus hybridus HOM05D002468 ORTHO05D005371 4.3e-156 555.1 394 74.9
Peaxi162Scf00842g00319 Petunia axillaris HOM05D002468 ORTHO05D005371 4.3e-156 555.1 394 76.1
TPR.G9718 Trifolium pratense HOM05D002468 ORTHO05D005371 4.3e-156 555.1 345 82.3
PSO478G3355 Papaver somniferum HOM05D002468 ORTHO05D005371 7.4e-156 554.3 391 76.2
Actinidia22113 Actinidia chinensis HOM05D002468 ORTHO05D005371 1.6e-155 553.1 380 78.2
PGSC0003DMG402028027 Solanum tuberosum HOM05D002468 ORTHO05D005371 3.7e-155 552.0 368 78.5
vmacro01017 Vaccinium macrocarpon HOM05D002468 ORTHO05D005371 3.7e-155 552.0 395 75.2
Ca_04094_v3 Cicer arietinum L. HOM05D002468 ORTHO05D005371 4.8e-155 551.6 359 79.7
Medtr7g006560 Medicago truncatula HOM05D002468 ORTHO05D005371 6.3e-155 551.2 391 74.7
CAN.G624.1 Capsicum annuum HOM05D002468 ORTHO05D005371 1.1e-154 550.4 391 74.2
SalBow2G0960 Salvia bowleyana HOM05D002468 ORTHO05D005371 1.4e-154 550.1 348 81.9
HanXRQChr06g0175161 Helianthus annuus HOM05D002468 ORTHO05D005371 1.8e-154 549.7 393 75.1
Lalb_Chr04g0257301 Lupinus albus HOM05D002468 ORTHO05D005371 2.4e-154 549.3 389 75.1
Psat3g207000 Pisum sativum HOM05D002468 ORTHO05D005371 4.1e-154 548.5 345 82.3
MSTRG.8058 Avicennia marina HOM05D002468 ORTHO05D005371 5.3e-154 548.1 394 74.9
unitig_8.g2893 Utricularia gibba HOM05D002468 ORTHO05D005371 6.9e-154 547.7 314 87.6
Solyc11g033288.1 Solanum lycopersicum HOM05D002468 ORTHO05D005371 2.0e-153 546.2 368 78.5
Sopen11g017140 Solanum pennellii HOM05D002468 ORTHO05D005371 2.0e-153 546.2 368 78.5
Os01g0926300 Oryza sativa ssp. japonica HOM05D002468 ORTHO05D005371 4.5e-153 545.0 318 86.2
Zm00001eb142730 Zea mays HOM05D002468 ORTHO05D005371 9.4e-151 537.3 318 84.6
Zm00001eb363880 Zea mays HOM05D002468 ORTHO05D005371 2.1e-150 536.2 318 84.3
HanXRQChr06g0175171 Helianthus annuus HOM05D002468 ORTHO05D005371 7.9e-150 534.3 343 77.8
HPP92_009801 Vanilla planifolia HOM05D002468 ORTHO05D005371 1.1e-148 530.4 357 77.0
ATR0582G307 Amborella trichopoda HOM05D002468 ORTHO05D005371 5.7e-148 528.1 313 83.7
SGA_v2.0_scaffold258G45768 Striga asiatica HOM05D002468 ORTHO05D005371 1.7e-147 526.6 350 78.6
MBI07_g48060_MAGBIO Magnolia biondii HOM05D002468 ORTHO05D005371 8.2e-147 524.2 432 67.6
CDE05G3080 Ceratophyllum demersum HOM05D002468 ORTHO05D005371 1.1e-146 523.9 322 80.7
Potri.003G161900 Populus trichocarpa HOM05D002468 ORTHO05D005371 1.8e-146 523.1 365 76.7
Migut.K01049 Erythranthe guttata HOM05D002468 ORTHO05D005371 2.4e-146 522.7 393 73.0
CDE05G2158 Ceratophyllum demersum HOM05D002468 ORTHO05D005371 1.2e-145 520.4 326 79.8
CSS0032033 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 7.7e-145 517.7 325 82.5
Nitab4.5_0004349g0040 Nicotiana tabacum HOM05D002468 ORTHO05D005371 2.3e-141 506.1 364 75.5
Nitab4.5_0002569g0040 Nicotiana tabacum HOM05D002468 ORTHO05D005371 3.9e-141 505.4 365 75.1
Lalb_Chr10g0091121 Lupinus albus HOM05D002468 ORTHO05D005371 2.6e-140 502.7 318 82.7
Lj4g0027400 Lotus japonicus HOM05D002468 ORTHO05D005371 1.2e-129 467.2 314 72.3
Lalb_Chr13g0296941 Lupinus albus HOM05D002468 ORTHO05D005371 3.5e-129 465.7 314 71.0
AagrBONN_evm.TU.Sc2ySwM_228.2334 Anthoceros agrestis HOM05D002468 ORTHO05D005371 7.7e-129 464.5 355 66.8
Glyma.05G199800 Glycine max HOM05D002468 ORTHO05D005371 5.2e-125 451.8 313 69.6
SMO367G1271 Selaginella moellendorffii HOM05D002468 ORTHO05D005371 5.2e-125 451.8 319 71.8
Medtr8g096130 Medicago truncatula HOM05D002468 ORTHO05D005371 2.6e-124 449.5 355 65.9
Mapoly0092s0071 Marchantia polymorpha HOM05D002468 ORTHO05D005371 2.8e-123 446.0 331 68.9
VMungo0251G2964 Vigna mungo HOM05D002468 ORTHO05D001247 3.7e-123 445.7 341 64.2
TPR.G12900 Trifolium pratense HOM05D002468 ORTHO05D005371 4.8e-123 445.3 346 66.5
Phvul.002G281000 Phaseolus vulgaris HOM05D002468 ORTHO05D005371 6.3e-123 444.9 326 66.6
Mapoly0092s0072 Marchantia polymorpha HOM05D002468 ORTHO05D005371 1.8e-122 443.4 313 70.6
Lj6C840T10 Lonicera japonica HOM05D002468 ORTHO05D005371 2.4e-122 443.0 254 89.0
Mapoly0092s0073 Marchantia polymorpha HOM05D002468 ORTHO05D005371 2.4e-122 443.0 313 70.6
Ca_16823_v3 Cicer arietinum L. HOM05D002468 ORTHO05D005371 1.5e-119 433.7 342 63.2
Pp3c26_4790 Physcomitrium patens HOM05D002468 ORTHO05D005371 2.5e-119 433.0 372 61.8
ClCG06G013000 Citrullus lanatus HOM05D002468 ORTHO05D005371 1.3e-115 420.6 311 64.3
MELO3C017506.2 Cucumis melo HOM05D002468 ORTHO05D005371 3.3e-111 406.0 311 63.0
Cpa.g.sc2215.1 Carica papaya HOM05D002468 ORTHO05D005371 4.3e-111 405.6 311 64.0
SHI04110 Sapria himalayana HOM05D002468 ORTHO05D005371 1.5e-108 397.1 271 76.4
CBR_g51451 Chara braunii HOM05D002468 ORTHO05D005371 1.5e-103 380.6 317 63.1
arahy.Tifrunner.gnm1.ann1.93S04R Arachis hypogaea HOM05D002468 ORTHO05D005371 3.2e-82 309.7 317 55.2
Eucgr.H00650 Eucalyptus grandis HOM05D002468 ORTHO05D005371 1.5e-79 300.8 255 60.8
BolC3t13348H Brassica oleracea HOM05D002468 ORTHO05D005371 2.6e-68 263.5 174 83.3
Lj2g0022028 Lotus japonicus HOM05D002468 ORTHO05D005371 2.9e-67 260.0 184 71.2
C03p08440 Brassica napus HOM05D002468 ORTHO05D005371 8.7e-64 248.4 145 90.3
Mapoly0189s0003 Marchantia polymorpha HOM05D002468 ORTHO05D005371 2.8e-62 243.4 237 52.3
arahy.Tifrunner.gnm1.ann1.1XR5VC Arachis hypogaea HOM05D002468 ORTHO05D005371 1.6e-57 227.6 189 61.9
Glyma.15G205533 Glycine max HOM05D002468 ORTHO05D005371 1.1e-53 214.9 154 68.8
HanXRQChr10g0304361 Helianthus annuus HOM05D002468 ORTHO05D005371 1.4e-53 214.5 116 86.2
CsaV3_1G031170 Cucumis sativus L. HOM05D002468 ORTHO05D005371 8.2e-38 162.2 162 53.1
BcaB01g05316 Brassica carinata HOM05D000877 ORTHO05D012137 1.1e-37 161.8 111 79.3
Glyma.08G007300 Glycine max HOM05D002468 ORTHO05D005371 5.3e-37 159.5 119 67.2
BolC3t13237H Brassica oleracea HOM05D000877 ORTHO05D012137 6.5e-35 152.5 81 93.8
CsaV3_1G031160 Cucumis sativus L. HOM05D002468 ORTHO05D005371 3.2e-26 123.6 80 71.2
SGA_v2.0_scaffold4G02418 Striga asiatica HOM05D002468 ORTHO05D051394 3.0e-24 117.1 102 59.8
SGA_v2.0_scaffold528G52739 Striga asiatica HOM05D002468 ORTHO05D051394 5.5e-18 96.3 108 50.9
SEGI_31132 Sequoiadendron giganteum HOM05D002468 ORTHO05D005371 8.0e-17 92.4 62 64.5
Pp3c3_15390 Physcomitrium patens HOM05D002468 ORTHO05D005371 3.7e-14 83.6 94 50.0
vmacro08874 Vaccinium macrocarpon HOM05D002468 ORTHO05D013153 8.8e-08 62.4 35 82.9
Lalb_Chr10g0091111 Lupinus albus HOM05D002468 ORTHO05D005371 4.4e-07 60.1 31 90.3


User provided reference genes

Program Settings