Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung01121 Brassica carinata HOM05D004169 ORTHO05D004942 4.1e-190 667.9 345 100.0
BcaC09g50903 Brassica carinata HOM05D004169 ORTHO05D004942 2.5e-147 525.8 413 70.9
BraA01t01487Z Brassica rapa HOM05D004169 ORTHO05D004942 9.6e-147 523.9 412 70.6
A01p15480 Brassica napus HOM05D004169 ORTHO05D004942 1.3e-146 523.5 412 70.9
C01p19380 Brassica napus HOM05D004169 ORTHO05D004942 1.8e-145 519.6 248 98.4
Sp7g22120 Schrenkiella parvula HOM05D004169 ORTHO05D004942 1.8e-145 519.6 413 68.5
BolC1t01866H Brassica oleracea HOM05D004169 ORTHO05D004942 5.3e-145 518.1 248 98.0
C07p53400 Brassica napus HOM05D004169 ORTHO05D004942 3.9e-140 501.9 250 94.4
BraA03t14568Z Brassica rapa HOM05D004169 ORTHO05D004942 3.9e-140 501.9 250 94.4
Thhalv10025308m.g Eutrema salsugineum HOM05D004169 ORTHO05D004942 3.9e-140 501.9 413 69.0
BolC7t45834H Brassica oleracea HOM05D004169 ORTHO05D004942 8.7e-140 500.7 250 94.0
A03p55080 Brassica napus HOM05D004169 ORTHO05D004942 3.3e-139 498.8 250 94.0
AL7G29130 Arabidopsis lyrata HOM05D004169 ORTHO05D004942 5.6e-139 498.0 248 92.7
AT4G24160 Arabidopsis thaliana HOM05D004169 ORTHO05D004942 9.6e-139 497.3 413 65.1
CARHR231560 Cardamine hirsuta HOM05D004169 ORTHO05D004942 1.1e-137 493.8 414 65.5
Carub.0007s1694 Capsella rubella HOM05D004169 ORTHO05D004942 6.7e-132 474.6 413 61.5
Aa31sc185G60 Aethionema arabicum HOM05D004169 ORTHO05D004942 4.5e-128 461.8 248 87.9
Atru.chr13.351 Acer truncatum HOM05D004169 ORTHO05D004942 2.9e-127 459.1 244 86.1
THA.LOC104806900 Tarenaya hassleriana HOM05D004169 ORTHO05D004942 3.8e-127 458.8 250 86.4
Manes.18G017100 Manihot esculenta HOM05D004169 ORTHO05D004942 1.1e-126 457.2 244 85.7
TAR628G0735 Trochodendron aralioides HOM05D004169 ORTHO05D004942 2.5e-126 456.1 244 84.4
Cpa.g.sc140.24 Carica papaya HOM05D004169 ORTHO05D004942 2.7e-125 452.6 242 84.3
Ciclev10001334m.g Citrus clementina HOM05D004169 ORTHO05D004942 3.6e-125 452.2 244 84.8
Nn5g29242 Nelumbo nucifera HOM05D004169 ORTHO05D004942 7.9e-125 451.1 274 77.0
Glyma.04G026500 Glycine max HOM05D004169 ORTHO05D004942 1.3e-124 450.3 244 83.6
PGR083G1299 Punica granatum HOM05D004169 ORTHO05D004942 1.8e-124 449.9 244 84.8
THA.LOC104804855 Tarenaya hassleriana HOM05D004169 ORTHO05D004942 3.9e-124 448.7 248 84.3
Lalb_Chr08g0246061 Lupinus albus HOM05D004169 ORTHO05D004942 5.1e-124 448.4 248 81.9
Potri.005G235200 Populus trichocarpa HOM05D004169 ORTHO05D004942 2.5e-123 446.0 248 82.7
Lj4C791T8 Lonicera japonica HOM05D004169 ORTHO05D004942 5.7e-123 444.9 244 82.4
Ca_02057_v3 Cicer arietinum L. HOM05D004169 ORTHO05D004942 1.6e-122 443.4 244 83.2
Sabra02G0021500 Salix brachista HOM05D004169 ORTHO05D004942 2.8e-122 442.6 244 82.8
Aqoxy6G02346 Aquilegia oxysepala HOM05D004169 ORTHO05D004942 4.8e-122 441.8 245 84.1
Atru.chr13.350 Acer truncatum HOM05D004169 ORTHO05D004942 6.3e-122 441.4 248 81.0
Hma1.2p1_1386F.1_g279800 Hydrangea macrophylla HOM05D004169 ORTHO05D004942 1.4e-121 440.3 244 81.6
VMungo1309G1829 Vigna mungo HOM05D004169 ORTHO05D004942 1.8e-121 439.9 244 83.2
GSVIVG01009830001 Vitis vinifera HOM05D004169 ORTHO05D004942 1.8e-121 439.9 244 82.0
MSTRG.1220 Avicennia marina HOM05D004169 ORTHO05D004942 3.1e-121 439.1 248 79.8
Os09g0520200 Oryza sativa ssp. japonica HOM05D004169 ORTHO05D004942 4.1e-121 438.7 244 80.7
MBI05_g16274_MAGBIO Magnolia biondii HOM05D004169 ORTHO05D004942 5.3e-121 438.3 249 79.9
Cc10_g02050 Coffea canephora HOM05D004169 ORTHO05D004942 1.5e-120 436.8 244 80.7
CsaV3_2G029300 Cucumis sativus L. HOM05D004169 ORTHO05D004942 2.0e-120 436.4 244 80.3
Potri.002G027300 Populus trichocarpa HOM05D004169 ORTHO05D004942 4.5e-120 435.3 244 82.4
Zm00001eb102970 Zea mays HOM05D004169 ORTHO05D004942 4.5e-120 435.3 244 81.6
ATR0149G003 Amborella trichopoda HOM05D004169 ORTHO05D004942 5.9e-120 434.9 245 82.0
CANSAT35G1895 Cannabis sativa HOM05D004169 ORTHO05D004942 7.7e-120 434.5 244 82.4
Medtr3g113160 Medicago truncatula HOM05D004169 ORTHO05D004942 1.3e-119 433.7 244 79.9
Oeu047750.1 Olea europaea HOM05D004169 ORTHO05D004942 2.9e-119 432.6 244 80.3
Phvul.009G014600 Phaseolus vulgaris HOM05D004169 ORTHO05D004942 2.9e-119 432.6 239 82.0
MELO3C010990.2 Cucumis melo HOM05D004169 ORTHO05D004942 6.5e-119 431.4 239 80.3
ClCG08G014480 Citrullus lanatus HOM05D004169 ORTHO05D004942 8.5e-119 431.0 244 79.5
Migut.C00795 Erythranthe guttata HOM05D004169 ORTHO05D004942 1.4e-118 430.3 248 80.2
CiPaw.07G153600 Carya illinoinensis HOM05D004169 ORTHO05D004942 1.9e-118 429.9 244 81.6
FAN20G1955 Fragaria x ananassa HOM05D004169 ORTHO05D004942 2.5e-118 429.5 268 73.5
Duzib093G0775 Durio zibethinus HOM05D004169 ORTHO05D004942 3.2e-118 429.1 245 80.4
FAN15G3243 Fragaria x ananassa HOM05D004169 ORTHO05D004942 3.2e-118 429.1 248 78.6
Hma1.2p1_0773F.1_g216220 Hydrangea macrophylla HOM05D004169 ORTHO05D004942 3.2e-118 429.1 245 80.4
TPR.G30291 Trifolium pratense HOM05D004169 ORTHO05D004942 3.2e-118 429.1 244 79.5
HPP92_014629 Vanilla planifolia HOM05D004169 ORTHO05D004942 3.2e-118 429.1 249 78.7
Cfa013911 Carpinus fangiana HOM05D004169 ORTHO05D004942 4.2e-118 428.7 244 81.6
RcHm_v2.0_Chr6g0302201 Rosa chinensis HOM05D004169 ORTHO05D004942 5.5e-118 428.3 244 79.5
Actinidia22490 Actinidia chinensis HOM05D004169 ORTHO05D004942 7.2e-118 427.9 244 81.1
Actinidia22492 Actinidia chinensis HOM05D004169 ORTHO05D004942 7.2e-118 427.9 244 81.1
QL02p010782 Quercus lobata HOM05D004169 ORTHO05D004942 7.2e-118 427.9 245 79.6
DCAR_013851 Daucus carota HOM05D004169 ORTHO05D004942 9.4e-118 427.6 244 80.3
Oeu030387.1 Olea europaea HOM05D004169 ORTHO05D004942 2.1e-117 426.4 248 80.2
Oeu030389.1 Olea europaea HOM05D004169 ORTHO05D004942 2.1e-117 426.4 248 80.2
Sed0010010 Sechium edule HOM05D004169 ORTHO05D004942 2.1e-117 426.4 244 79.1
Thecc.08G038200 Theobroma cacao HOM05D004169 ORTHO05D004942 2.7e-117 426.0 246 79.3
TWI56G0721 Tripterygium wilfordii HOM05D004169 ORTHO05D004942 2.7e-117 426.0 244 78.3
FvH4_2g39100 Fragaria vesca HOM05D004169 ORTHO05D004942 3.6e-117 425.6 248 77.8
EL10Ac1g00441 Beta vulgaris HOM05D004169 ORTHO05D004942 6.1e-117 424.9 244 80.3
Eucgr.F01623 Eucalyptus grandis HOM05D004169 ORTHO05D004942 1.0e-116 424.1 244 77.5
Hund26864 Selenicereus undatus HOM05D004169 ORTHO05D004942 1.4e-116 423.7 244 79.9
AUR62014419 Chenopodium quinoa HOM05D004169 ORTHO05D004942 2.3e-116 422.9 244 79.5
Prupe.1G370200 Prunus persica HOM05D004169 ORTHO05D004942 3.0e-116 422.5 244 79.1
unitig_37.g13009 Utricularia gibba HOM05D004169 ORTHO05D004942 3.0e-116 422.5 248 78.6
Duzib116G0263 Durio zibethinus HOM05D004169 ORTHO05D004942 3.9e-116 422.2 245 78.8
SGA_v2.0_scaffold17G08098 Striga asiatica HOM05D004169 ORTHO05D004942 5.1e-116 421.8 257 77.0
Lj1g0021833 Lotus japonicus HOM05D004169 ORTHO05D004942 8.8e-116 421.0 244 78.3
MSTRG.24262 Avicennia marina HOM05D004169 ORTHO05D004942 1.5e-115 420.2 248 78.2
Sc15g0002560 Simmondsia chinensis HOM05D004169 ORTHO05D004942 1.5e-115 420.2 244 80.3
ECA232G2227 Erigeron canadensis HOM05D004169 ORTHO05D004942 2.6e-115 419.5 233 79.8
Dinv39491 Davidia involucrata HOM05D004169 ORTHO05D004942 5.7e-115 418.3 244 78.7
TAR376G0386 Trochodendron aralioides HOM05D004169 ORTHO05D004942 7.4e-115 417.9 244 79.1
Medtr1g023340 Medicago truncatula HOM05D004169 ORTHO05D004942 2.2e-114 416.4 244 78.7
Sabra05G0181500 Salix brachista HOM05D004169 ORTHO05D004942 2.2e-114 416.4 248 79.4
TWI12G0121 Tripterygium wilfordii HOM05D004169 ORTHO05D004942 2.2e-114 416.4 244 76.6
Sc26g0003230 Simmondsia chinensis HOM05D004169 ORTHO05D004942 2.8e-114 416.0 233 82.4
Ah.05g171900 Amaranthus hybridus HOM05D004169 ORTHO05D004942 3.7e-114 415.6 244 77.0
CSS0042982 Camellia sinensis var. sinensis HOM05D004169 ORTHO05D004942 8.2e-114 414.5 244 76.2
CSS0046054 Camellia sinensis var. sinensis HOM05D004169 ORTHO05D004942 8.2e-114 414.5 244 76.2
BcaNung06401 Brassica carinata HOM05D004169 ORTHO05D004942 1.4e-113 413.7 233 84.5
Actinidia37978 Actinidia chinensis HOM05D004169 ORTHO05D004942 2.4e-113 412.9 244 77.5
AUR62019155 Chenopodium quinoa HOM05D004169 ORTHO05D004942 2.4e-113 412.9 248 77.4
Psat6g005200 Pisum sativum HOM05D004169 ORTHO05D004942 2.4e-113 412.9 244 77.9
HanXRQChr09g0269701 Helianthus annuus HOM05D004169 ORTHO05D004942 4.1e-113 412.1 239 77.0
PSO675G0784 Papaver somniferum HOM05D004169 ORTHO05D004942 4.1e-113 412.1 244 77.0
PSO541G3059 Papaver somniferum HOM05D004169 ORTHO05D004942 6.9e-113 411.4 244 76.6
Actinidia15392 Actinidia chinensis HOM05D004169 ORTHO05D004942 9.1e-113 411.0 244 77.0
MD08G1017500 Malus domestica HOM05D004169 ORTHO05D004942 9.1e-113 411.0 244 77.9
MD15G1016400 Malus domestica HOM05D004169 ORTHO05D004942 9.1e-113 411.0 244 77.9
vmacro04328 Vaccinium macrocarpon HOM05D004169 ORTHO05D004942 2.0e-112 409.8 244 76.2
Migut.N03135 Erythranthe guttata HOM05D004169 ORTHO05D004942 2.6e-112 409.5 248 76.2
vmacro21702 Vaccinium macrocarpon HOM05D004169 ORTHO05D004942 4.5e-112 408.7 244 74.6
TPR.G34338 Trifolium pratense HOM05D004169 ORTHO05D004942 5.9e-112 408.3 244 77.5
Haze_22591 Corylus avellana HOM05D004169 ORTHO05D004942 7.7e-112 407.9 268 73.5
Phvul.001G009400 Phaseolus vulgaris HOM05D004169 ORTHO05D004942 3.8e-111 405.6 239 76.6
Dinv31815 Davidia involucrata HOM05D004169 ORTHO05D004942 5.0e-111 405.2 244 75.4
Hund17227 Selenicereus undatus HOM05D004169 ORTHO05D004942 6.5e-111 404.8 243 76.5
Nitab4.5_0000352g0020 Nicotiana tabacum HOM05D004169 ORTHO05D004942 1.1e-110 404.1 248 75.4
Ca_13394_v3 Cicer arietinum L. HOM05D004169 ORTHO05D004942 1.9e-110 403.3 244 76.2
Glyma.14G216800 Glycine max HOM05D004169 ORTHO05D004942 1.9e-110 403.3 244 76.2
Lsat_1_v5_gn_4_116000 Lactuca sativa HOM05D004169 ORTHO05D004942 3.2e-110 402.5 242 74.0
VMungo0647G1986 Vigna mungo HOM05D004169 ORTHO05D004942 3.2e-110 402.5 244 75.8
unitig_8.g3381 Utricularia gibba HOM05D004169 ORTHO05D004942 7.2e-110 401.4 244 75.0
Gohir.A05G188120 Gossypium hirsutum HOM05D004169 ORTHO05D004942 1.2e-109 400.6 245 76.3
Glyma.17G255400 Glycine max HOM05D004169 ORTHO05D004942 2.7e-109 399.4 244 74.6
HanXRQChr05g0156291 Helianthus annuus HOM05D004169 ORTHO05D004942 2.7e-109 399.4 247 74.9
arahy.Tifrunner.gnm1.ann1.SD0DCP Arachis hypogaea HOM05D004169 ORTHO05D004942 6.1e-109 398.3 244 75.4
arahy.Tifrunner.gnm1.ann1.T5GNGC Arachis hypogaea HOM05D004169 ORTHO05D004942 6.1e-109 398.3 244 75.4
arahy.Tifrunner.gnm1.ann1.CMA0H9 Arachis hypogaea HOM05D004169 ORTHO05D004942 1.0e-108 397.5 281 66.5
Gorai.009G196500 Gossypium raimondii HOM05D004169 ORTHO05D004942 1.4e-108 397.1 245 75.9
Lj5g0006972 Lotus japonicus HOM05D004169 ORTHO05D004942 1.4e-108 397.1 244 75.8
DCAR_009941 Daucus carota HOM05D004169 ORTHO05D004942 3.0e-108 396.0 272 67.3
Lsat_1_v5_gn_5_26101 Lactuca sativa HOM05D004169 ORTHO05D004942 3.0e-108 396.0 247 73.3
Lalb_Chr22g0354451 Lupinus albus HOM05D004169 ORTHO05D004942 8.8e-108 394.4 247 73.7
arahy.Tifrunner.gnm1.ann1.3VK2QG Arachis hypogaea HOM05D004169 ORTHO05D004942 3.3e-107 392.5 294 63.6
ECA246G0823 Erigeron canadensis HOM05D004169 ORTHO05D004942 3.3e-107 392.5 239 74.1
Peaxi162Scf00186g00012 Petunia axillaris HOM05D004169 ORTHO05D004942 3.3e-107 392.5 248 73.4
Sopen07g015700 Solanum pennellii HOM05D004169 ORTHO05D004942 1.7e-106 390.2 244 72.5
Rhsim06G0026100 Rhododendron simsii HOM05D004169 ORTHO05D004942 7.0e-105 384.8 244 72.1
Rhsim07G0244700 Rhododendron simsii HOM05D004169 ORTHO05D004942 1.2e-104 384.0 297 63.3
CAN.G541.46 Capsicum annuum HOM05D004169 ORTHO05D004942 4.5e-104 382.1 244 73.0
Nitab4.5_0004368g0020 Nicotiana tabacum HOM05D004169 ORTHO05D004942 3.6e-101 372.5 244 72.5
Glyma.06G026500 Glycine max HOM05D004169 ORTHO05D004942 4.8e-98 362.1 218 78.0
SMO266G0010 Selaginella moellendorffii HOM05D004169 ORTHO05D004942 6.3e-98 361.7 240 67.5
AagrBONN_evm.TU.Sc2ySwM_362.1142 Anthoceros agrestis HOM05D004169 ORTHO05D004942 2.5e-94 349.7 239 64.0
Mapoly0037s0009 Marchantia polymorpha HOM05D004169 ORTHO05D004942 1.4e-92 344.0 231 66.7
SEGI_38743 Sequoiadendron giganteum HOM05D004169 ORTHO05D004942 3.0e-92 342.8 212 71.2
MD00G1162000 Malus domestica HOM05D004169 ORTHO05D004942 1.2e-91 340.9 244 69.3
Pp3c9_570 Physcomitrium patens HOM05D004169 ORTHO05D004942 1.0e-87 327.8 232 63.4
SalBow7G3670 Salvia bowleyana HOM05D004169 ORTHO05D004942 7.0e-81 305.1 163 83.4
Psat5g014480 Pisum sativum HOM05D004169 ORTHO05D004942 8.6e-79 298.1 171 79.5
Gorai.009G270900 Gossypium raimondii HOM05D004169 ORTHO05D004942 2.1e-77 293.5 278 54.0
CBR_g53937 Chara braunii HOM05D004169 ORTHO05D004942 8.9e-76 288.1 237 56.5
Gohir.D05G259151 Gossypium hirsutum HOM05D004169 ORTHO05D004942 2.0e-75 287.0 265 54.7
Solyc07g032180.3 Solanum lycopersicum HOM05D004169 ORTHO05D004942 2.9e-74 283.1 181 70.2
Sed0000348 Sechium edule HOM05D004169 ORTHO05D004942 1.8e-73 280.4 164 76.8
SGA_v2.0_scaffold92G28285 Striga asiatica HOM05D004169 ORTHO05D004942 2.3e-68 263.5 205 64.4
COL.COLO4_26191 Corchorus olitorius HOM05D004169 ORTHO05D004942 1.6e-61 240.7 151 73.5
Gohir.D05G191200 Gossypium hirsutum HOM05D004169 ORTHO05D004942 4.6e-56 222.6 138 73.9
Cre01.g000300 Chlamydomonas reinhardtii HOM05D004169 ORTHO05D004942 6.6e-47 192.2 250 41.6
CARHR269140 Cardamine hirsuta HOM05D004169 ORTHO05D004942 1.7e-42 177.6 85 92.9
DCAR_009944 Daucus carota HOM05D004169 ORTHO05D004942 1.5e-38 164.5 94 75.5
Lsat_1_v5_gn_9_64701 Lactuca sativa HOM05D004169 ORTHO05D004942 1.3e-37 161.4 89 78.7
PRCOL_00002006 Prasinoderma coloniale HOM05D004169 ORTHO05D004942 1.5e-30 137.9 227 34.8
Cfa027320 Carpinus fangiana HOM05D004169 ORTHO05D004942 2.5e-30 137.1 311 28.9
Haze_22590 Corylus avellana HOM05D004169 ORTHO05D002838 7.9e-24 115.5 60 85.0
TPR.G34370 Trifolium pratense HOM05D004169 ORTHO05D004942 9.6e-22 108.6 65 69.2
CARHR269150 Cardamine hirsuta HOM05D004169 ORTHO05D004942 3.1e-12 77.0 39 92.3
Pp3s30_380 Physcomitrium patens HOM05D000068 ORTHO05D020444 9.3e-09 65.5 258 24.4
Pp3s30_381 Physcomitrium patens HOM05D000068 ORTHO05D020444 9.3e-09 65.5 258 24.4
Lsat_1_v5_gn_3_21400 Lactuca sativa HOM05D004169 ORTHO05D004942 2.5e-06 57.4 37 70.3
SEGI_09765 Sequoiadendron giganteum HOM05D007239 ORTHO05D003473 7.4e-06 55.8 97 34.0


User provided reference genes

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