Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung01113 Brassica carinata HOM05D006904 ORTHO05D008439 1.6e-164 582.8 317 100.0
BcaC09g50912 Brassica carinata HOM05D006904 ORTHO05D008439 5.0e-150 534.6 317 92.4
BolC1t01857H Brassica oleracea HOM05D000458 ORTHO05D000951 6.5e-150 534.3 316 92.4
C01p19310 Brassica napus HOM05D000458 ORTHO05D000951 1.9e-149 532.7 316 92.1
BraA01t01480Z Brassica rapa HOM05D006904 ORTHO05D008439 7.2e-149 530.8 317 91.8
A01p15360 Brassica napus HOM05D000458 ORTHO05D000951 1.2e-148 530.0 316 91.5
Thhalv10025762m.g Eutrema salsugineum HOM05D006904 ORTHO05D008439 2.0e-143 512.7 319 87.1
Sp7g22050 Schrenkiella parvula HOM05D006904 ORTHO05D008439 1.3e-134 483.4 313 84.3
AL7G29200 Arabidopsis lyrata HOM05D006904 ORTHO05D008439 1.2e-132 476.9 313 83.1
Carub.0007s1701 Capsella rubella HOM05D006904 ORTHO05D008439 4.9e-129 464.9 313 81.5
AT4G24090 Arabidopsis thaliana HOM05D006904 ORTHO05D008439 4.1e-128 461.8 313 80.8
Aa31LG6G7300 Aethionema arabicum HOM05D006904 ORTHO05D008439 9.2e-112 407.5 315 72.1
THA.LOC104813055 Tarenaya hassleriana HOM05D006904 ORTHO05D008439 1.2e-106 390.6 319 69.3
COL.COLO4_10787 Corchorus olitorius HOM05D006904 ORTHO05D008439 6.4e-81 305.1 316 57.6
MD14G1125000 Malus domestica HOM05D006904 ORTHO05D008439 1.6e-79 300.4 317 57.4
CARHR231490 Cardamine hirsuta HOM05D006904 ORTHO05D008439 6.7e-78 295.0 186 83.9
MD06G1117600 Malus domestica HOM05D006904 ORTHO05D008439 6.7e-78 295.0 302 58.6
Gohir.A12G239500 Gossypium hirsutum HOM05D006904 ORTHO05D008439 2.8e-76 289.7 319 55.5
Thecc.03G222200 Theobroma cacao HOM05D006904 ORTHO05D008439 3.7e-76 289.3 308 56.8
Gohir.D12G240700 Gossypium hirsutum HOM05D006904 ORTHO05D008439 4.8e-76 288.9 319 55.2
Gorai.008G257800 Gossypium raimondii HOM05D006904 ORTHO05D008439 4.8e-76 288.9 319 55.2
MSTRG.24864 Avicennia marina HOM05D006904 ORTHO05D008439 3.1e-75 286.2 253 61.3
Nitab4.5_0004251g0070 Nicotiana tabacum HOM05D006904 ORTHO05D008439 5.3e-75 285.4 279 55.9
RcHm_v2.0_Chr7g0186801 Rosa chinensis HOM05D006904 ORTHO05D008439 5.3e-75 285.4 279 58.8
Potri.001G084500 Populus trichocarpa HOM05D006904 ORTHO05D008439 1.2e-74 284.3 250 62.8
Sopen08g031220 Solanum pennellii HOM05D006904 ORTHO05D008439 2.9e-73 279.6 258 58.5
TWI81G0826 Tripterygium wilfordii HOM05D006904 ORTHO05D008439 3.8e-73 279.3 256 57.4
Ah.12g053150 Amaranthus hybridus HOM05D006904 ORTHO05D008439 4.9e-73 278.9 308 53.6
Cfa011933 Carpinus fangiana HOM05D006904 ORTHO05D008439 4.9e-73 278.9 257 59.9
Solyc08g083010.3 Solanum lycopersicum HOM05D006904 ORTHO05D008439 6.5e-73 278.5 258 58.5
PGSC0003DMG400012243 Solanum tuberosum HOM05D006904 ORTHO05D008439 1.9e-72 276.9 247 59.1
Haze_09157 Corylus avellana HOM05D006904 ORTHO05D008439 4.2e-72 275.8 315 52.4
CAN.G567.78 Capsicum annuum HOM05D006904 ORTHO05D008439 7.1e-72 275.0 259 57.5
Haze_09163 Corylus avellana HOM05D006904 ORTHO05D008439 7.1e-72 275.0 257 59.1
Atru.chr9.1900 Acer truncatum HOM05D006904 ORTHO05D008439 1.2e-71 274.2 242 63.2
EL10Ac5g12440 Beta vulgaris HOM05D006904 ORTHO05D008439 2.1e-71 273.5 262 56.9
PSO675G2501 Papaver somniferum HOM05D006904 ORTHO05D008439 2.1e-71 273.5 257 58.0
Ciclev10021179m.g Citrus clementina HOM05D006904 ORTHO05D008439 2.7e-71 273.1 276 55.8
Aqoxy5G04256 Aquilegia oxysepala HOM05D006904 ORTHO05D008439 3.5e-71 272.7 254 58.7
FAN04G1837 Fragaria x ananassa HOM05D006904 ORTHO05D008439 6.0e-71 271.9 259 59.1
arahy.Tifrunner.gnm1.ann1.U3Q9D7 Arachis hypogaea HOM05D006904 ORTHO05D008439 1.0e-70 271.2 311 52.7
Lj2g0027548 Lotus japonicus HOM05D006904 ORTHO05D008439 1.5e-69 267.3 302 54.6
FvH4_5g11010 Fragaria vesca HOM05D006904 ORTHO05D008439 3.3e-69 266.2 259 58.7
FAN18G2239 Fragaria x ananassa HOM05D006904 ORTHO05D008439 3.3e-69 266.2 259 58.7
Oeu010740.1 Olea europaea HOM05D006904 ORTHO05D008439 5.7e-69 265.4 238 59.2
FAN13G1638 Fragaria x ananassa HOM05D006904 ORTHO05D008439 9.6e-69 264.6 261 57.5
MBI04_g44912_MAGBIO Magnolia biondii HOM05D006904 ORTHO05D008439 1.3e-68 264.2 297 54.5
PSO541G0496 Papaver somniferum HOM05D006904 ORTHO05D008439 2.8e-68 263.1 256 56.2
Sc01g0010610 Simmondsia chinensis HOM05D006904 ORTHO05D008439 3.7e-68 262.7 304 51.3
Migut.A01096 Erythranthe guttata HOM05D006904 ORTHO05D008439 1.1e-67 261.2 256 54.7
QL02p029228 Quercus lobata HOM05D006904 ORTHO05D008439 1.8e-67 260.4 294 52.0
Prupe.5G128700 Prunus persica HOM05D006904 ORTHO05D008439 2.4e-67 260.0 257 58.8
Sabra01G0061300 Salix brachista HOM05D006904 ORTHO05D008439 3.1e-67 259.6 293 52.6
Actinidia04169 Actinidia chinensis HOM05D006904 ORTHO05D008439 5.3e-67 258.8 313 47.3
Rhsim02G0251400 Rhododendron simsii HOM05D006904 ORTHO05D008439 6.9e-67 258.5 300 52.7
vmacro11509 Vaccinium macrocarpon HOM05D006904 ORTHO05D008439 6.9e-67 258.5 312 50.6
Duzib205G0314 Durio zibethinus HOM05D006904 ORTHO05D008439 1.2e-66 257.7 316 53.8
Peaxi162Scf00074g00356 Petunia axillaris HOM05D006904 ORTHO05D008439 1.2e-66 257.7 252 56.0
arahy.Tifrunner.gnm1.ann1.NJ37M5 Arachis hypogaea HOM05D006904 ORTHO05D008439 2.0e-66 256.9 329 50.2
TAR629G0561 Trochodendron aralioides HOM05D006904 ORTHO05D008439 2.0e-66 256.9 324 50.0
AUR62007044 Chenopodium quinoa HOM05D006904 ORTHO05D008439 5.9e-66 255.4 266 54.1
MBI04_g21743_MAGBIO Magnolia biondii HOM05D006904 ORTHO05D008439 5.9e-66 255.4 239 60.7
Dinv02287 Davidia involucrata HOM05D006904 ORTHO05D008439 2.9e-65 253.1 314 48.4
Eucgr.E01035 Eucalyptus grandis HOM05D006904 ORTHO05D008439 3.8e-65 252.7 289 50.5
ECA233G3570 Erigeron canadensis HOM05D006904 ORTHO05D008439 6.5e-65 251.9 244 55.7
Hma1.2p1_0456F.1_g156570 Hydrangea macrophylla HOM05D006904 ORTHO05D008439 6.5e-65 251.9 245 58.0
HanXRQChr07g0192161 Helianthus annuus HOM05D006904 ORTHO05D008439 1.4e-64 250.8 311 46.3
Ca_13963_v3 Cicer arietinum L. HOM05D006904 ORTHO05D008439 7.2e-64 248.4 280 54.6
CSS0028351 Camellia sinensis var. sinensis HOM05D006904 ORTHO05D008439 1.6e-63 247.3 260 53.5
Lj8A201G80 Lonicera japonica HOM05D006904 ORTHO05D008439 3.6e-63 246.1 241 55.2
SGA_v2.0_scaffold104G30265 Striga asiatica HOM05D006904 ORTHO05D008439 4.6e-63 245.7 263 54.0
Medtr3g005290 Medicago truncatula HOM05D006904 ORTHO05D008439 6.1e-63 245.4 262 52.3
Nitab4.5_0007063g0060 Nicotiana tabacum HOM05D006904 ORTHO05D008439 6.1e-63 245.4 306 49.3
ClCG10G000840 Citrullus lanatus HOM05D006904 ORTHO05D008439 3.0e-62 243.0 312 49.4
Psat1g000400 Pisum sativum HOM05D006904 ORTHO05D008439 3.0e-62 243.0 276 51.8
Glyma.09G286200 Glycine max HOM05D006904 ORTHO05D008439 6.7e-62 241.9 258 53.9
Hund11354 Selenicereus undatus HOM05D006904 ORTHO05D008439 4.3e-61 239.2 256 54.3
GSVIVG01019640001 Vitis vinifera HOM05D006904 ORTHO05D008439 5.7e-61 238.8 258 53.9
Cc08_g16680 Coffea canephora HOM05D006904 ORTHO05D008439 2.2e-60 236.9 299 48.5
CDE11G0025 Ceratophyllum demersum HOM05D006904 ORTHO05D008439 4.8e-60 235.7 298 49.7
CDE09G0165 Ceratophyllum demersum HOM05D006904 ORTHO05D008439 6.3e-60 235.3 302 47.4
DCAR_006536 Daucus carota HOM05D006904 ORTHO05D008439 1.8e-59 233.8 238 54.2
TPR.G25509 Trifolium pratense HOM05D006904 ORTHO05D008439 4.1e-59 232.6 246 53.7
Phvul.002G333700 Phaseolus vulgaris HOM05D006904 ORTHO05D008439 3.4e-58 229.6 258 52.3
VMungo1309G0432 Vigna mungo HOM05D006904 ORTHO05D008439 5.9e-58 228.8 258 52.7
Lsat_1_v5_gn_6_9180 Lactuca sativa HOM05D000482 ORTHO05D000349 2.5e-56 223.4 249 50.2
CANSAT21G0222 Cannabis sativa HOM05D006904 ORTHO05D008439 3.2e-56 223.0 303 46.9
CiPaw.12G078200 Carya illinoinensis HOM05D006904 ORTHO05D008439 1.0e-54 218.0 273 48.0
BcaC09g50913 Brassica carinata HOM05D006904 ORTHO05D008439 1.8e-54 217.2 138 85.5
ATR0620G017 Amborella trichopoda HOM05D006904 ORTHO05D008439 8.8e-54 214.9 266 48.1
Sed0025618 Sechium edule HOM05D006904 ORTHO05D008439 2.6e-53 213.4 232 54.3
unitig_88.g27646 Utricularia gibba HOM05D006904 ORTHO05D008439 1.3e-52 211.1 240 49.6
CsaV3_3G000910 Cucumis sativus L. HOM05D006904 ORTHO05D008439 3.7e-52 209.5 266 50.8
PGR042G3610 Punica granatum HOM05D006904 ORTHO05D008439 4.8e-52 209.1 254 50.0
MELO3C013778.2 Cucumis melo HOM05D006904 ORTHO05D008439 6.9e-51 205.3 266 50.0
SalBow8G2695 Salvia bowleyana HOM05D006904 ORTHO05D008439 2.6e-50 203.4 256 48.4
Haze_16434 Corylus avellana HOM05D006904 ORTHO05D008439 1.1e-48 198.0 199 56.8
AUR62019908 Chenopodium quinoa HOM05D006904 ORTHO05D008439 4.2e-48 196.1 258 46.9
HPP92_025869 Vanilla planifolia HOM05D006904 ORTHO05D008439 1.1e-43 181.4 245 45.7
Haze_14079 Corylus avellana HOM05D006904 ORTHO05D008439 4.5e-42 176.0 229 50.2
Manes.02G003600 Manihot esculenta HOM05D006904 ORTHO05D008439 2.9e-41 173.3 221 52.0
Os09g0529350 Oryza sativa ssp. japonica HOM05D006904 ORTHO05D008439 5.5e-40 169.1 182 50.5
Zm00001eb319140 Zea mays HOM05D006904 ORTHO05D008439 7.5e-37 158.7 245 39.6
Cpa.g.sc175.18 Carica papaya HOM05D006904 ORTHO05D008439 2.8e-36 156.8 149 63.8
Aqoxy5G04252 Aquilegia oxysepala HOM05D006904 ORTHO05D008439 4.7e-31 139.4 147 57.1
ECA246G4131 Erigeron canadensis HOM05D006904 ORTHO05D008439 1.0e-30 138.3 219 39.7
Pp3c9_20020 Physcomitrium patens HOM05D006904 ORTHO05D008439 3.4e-29 133.3 278 34.2
SEGI_29366 Sequoiadendron giganteum HOM05D006904 ORTHO05D008439 3.4e-29 133.3 247 35.6
HanXRQChr06g0166841 Helianthus annuus HOM05D006904 ORTHO05D008439 4.8e-28 129.4 189 40.7
Lsat_1_v5_gn_3_13720 Lactuca sativa HOM05D006904 ORTHO05D008439 1.4e-27 127.9 247 36.8
Nn5g30646 Nelumbo nucifera HOM05D006904 ORTHO05D008439 1.5e-24 117.9 116 57.8
Mapoly0033s0090 Marchantia polymorpha HOM05D006904 ORTHO05D008439 1.2e-23 114.8 297 33.0
SMO361G0353 Selaginella moellendorffii HOM05D006904 ORTHO05D008439 8.0e-23 112.1 139 42.4
AagrBONN_evm.TU.Sc2ySwM_228.3172 Anthoceros agrestis HOM05D006904 ORTHO05D008439 1.3e-20 104.8 296 29.7
MCO05G331 Micromonas commoda HOM05D006904 ORTHO05D008439 9.2e-19 98.6 264 34.1
Aa31LG6G7320 Aethionema arabicum HOM05D003846 ORTHO05D004726 2.7e-18 97.1 156 46.2
CBR_g70738 Chara braunii HOM05D006904 ORTHO05D008439 8.6e-17 92.0 289 29.1
QL02p029244 Quercus lobata HOM05D006904 ORTHO05D008439 1.4e-14 84.7 136 43.4
Cre02.g144850 Chlamydomonas reinhardtii HOM05D006904 ORTHO05D008439 2.4e-11 73.9 245 30.2
AUR62041665 Chenopodium quinoa HOM05D006904 ORTHO05D008439 5.0e-09 66.2 58 53.4


User provided reference genes

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