Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung01112 Brassica carinata HOM05D003990 ORTHO05D004925 9.7e-147 523.5 268 100.0
BolC1t01856H Brassica oleracea HOM05D003990 ORTHO05D004925 3.4e-139 498.4 267 94.0
BcaC09g50914 Brassica carinata HOM05D003990 ORTHO05D004925 9.8e-139 496.9 267 94.0
C01p19300 Brassica napus HOM05D003990 ORTHO05D004925 3.1e-137 491.9 267 93.3
BraA01t01479Z Brassica rapa HOM05D003990 ORTHO05D004925 9.1e-137 490.3 267 92.1
A01p15350 Brassica napus HOM05D003990 ORTHO05D004925 1.6e-136 489.6 267 91.8
A01p15340 Brassica napus HOM05D003990 ORTHO05D004925 1.3e-114 416.8 262 76.0
Thhalv10026820m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 4.9e-114 414.8 262 76.0
BolC1t01855H Brassica oleracea HOM05D003990 ORTHO05D004925 2.4e-113 412.5 262 75.2
AL7G29210 Arabidopsis lyrata HOM05D003990 ORTHO05D004925 1.6e-112 409.8 256 79.3
Carub.0007s1702 Capsella rubella HOM05D003990 ORTHO05D004925 1.7e-111 406.4 256 78.5
C01p19290 Brassica napus HOM05D003990 ORTHO05D004925 2.3e-111 406.0 262 74.4
Aa31LG6G7280 Aethionema arabicum HOM05D003990 ORTHO05D004925 6.2e-109 397.9 264 75.0
THA.LOC104815209 Tarenaya hassleriana HOM05D003990 ORTHO05D004925 1.3e-103 380.2 258 71.3
BraA01t01478Z Brassica rapa HOM05D003990 ORTHO05D004925 4.3e-102 375.2 262 69.8
BcaC09g50915 Brassica carinata HOM05D003990 ORTHO05D004925 6.2e-101 371.3 230 76.1
CARHR006280 Cardamine hirsuta HOM05D003990 ORTHO05D004925 1.4e-100 370.2 230 77.0
THA.LOC104813054 Tarenaya hassleriana HOM05D003990 ORTHO05D004925 2.1e-88 329.7 267 60.7
AL6G44800 Arabidopsis lyrata HOM05D003990 ORTHO05D004925 2.3e-87 326.2 257 59.9
Thhalv10029450m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 3.9e-87 325.5 259 60.2
Prupe.5G128500 Prunus persica HOM05D003990 ORTHO05D004925 5.1e-87 325.1 254 60.6
Carub.0006s2953 Capsella rubella HOM05D003990 ORTHO05D004925 6.6e-87 324.7 264 58.0
A09p28480 Brassica napus HOM05D003990 ORTHO05D004925 8.7e-87 324.3 257 60.3
FAN13G1570 Fragaria x ananassa HOM05D003990 ORTHO05D004925 8.7e-87 324.3 260 60.8
BcaB01g01511 Brassica carinata HOM05D003990 ORTHO05D004925 2.5e-86 322.8 257 59.9
BraA09t38413Z Brassica rapa HOM05D003990 ORTHO05D004925 2.5e-86 322.8 257 60.3
AT4G10750 Arabidopsis thaliana HOM05D003990 ORTHO05D004925 3.3e-86 322.4 257 59.5
BcaC04g21069 Brassica carinata HOM05D003990 ORTHO05D004925 1.3e-85 320.5 257 59.5
C09p36050 Brassica napus HOM05D003990 ORTHO05D004925 1.3e-85 320.5 257 59.5
BolC9t56444H Brassica oleracea HOM05D003990 ORTHO05D004925 1.3e-85 320.5 257 59.5
CARHR255860 Cardamine hirsuta HOM05D003990 ORTHO05D004925 1.3e-85 320.5 259 59.5
Sp6g06750 Schrenkiella parvula HOM05D003990 ORTHO05D004925 2.1e-85 319.7 257 59.1
RcHm_v2.0_Chr7g0186781 Rosa chinensis HOM05D003990 ORTHO05D004925 4.8e-85 318.5 251 61.0
CiPaw.12G078400 Carya illinoinensis HOM05D003990 ORTHO05D004925 1.1e-84 317.4 258 59.7
Aa31LG9G11320 Aethionema arabicum HOM05D003990 ORTHO05D004925 1.4e-84 317.0 253 59.3
Phvul.003G021600 Phaseolus vulgaris HOM05D003990 ORTHO05D004925 1.4e-84 317.0 255 60.8
TAR629G1984 Trochodendron aralioides HOM05D003990 ORTHO05D004925 1.8e-84 316.6 271 58.7
Thhalv10027122m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 6.9e-84 314.7 250 60.4
VMungo1215G2928 Vigna mungo HOM05D003990 ORTHO05D004925 6.9e-84 314.7 265 58.9
CAN.G792.28 Capsicum annuum HOM05D003990 ORTHO05D004925 1.2e-83 313.9 265 55.8
Haze_14077 Corylus avellana HOM05D003990 ORTHO05D004925 1.2e-83 313.9 260 57.7
Cfa011935 Carpinus fangiana HOM05D003990 ORTHO05D004925 1.5e-83 313.5 260 58.5
Lsat_1_v5_gn_3_13681 Lactuca sativa HOM05D003990 ORTHO05D004925 5.8e-83 311.6 268 57.1
QL02p029212 Quercus lobata HOM05D003990 ORTHO05D004925 9.9e-83 310.8 263 58.2
Medtr1g031790 Medicago truncatula HOM05D003990 ORTHO05D004925 2.2e-82 309.7 265 58.1
Manes.11G125600 Manihot esculenta HOM05D003990 ORTHO05D004925 3.8e-82 308.9 266 57.5
COL.COLO4_10785 Corchorus olitorius HOM05D003990 ORTHO05D004925 6.4e-82 308.1 266 56.0
Lj2g0026928 Lotus japonicus HOM05D003990 ORTHO05D004925 1.1e-81 307.4 272 56.2
Thecc.03G222400 Theobroma cacao HOM05D003990 ORTHO05D004925 1.4e-81 307.0 255 57.3
ECA246G0738 Erigeron canadensis HOM05D003273 ORTHO05D004023 2.4e-81 306.2 255 57.3
PGSC0003DMG400005851 Solanum tuberosum HOM05D003990 ORTHO05D004925 3.2e-81 305.8 265 54.3
Cpa.g.sc175.15 Carica papaya HOM05D003990 ORTHO05D004925 4.2e-81 305.4 253 57.7
Cc08_g16660 Coffea canephora HOM05D003990 ORTHO05D004925 4.2e-81 305.4 264 56.1
MD06G1117400 Malus domestica HOM05D003990 ORTHO05D004925 5.4e-81 305.1 253 57.3
Duzib205G1059 Durio zibethinus HOM05D003990 ORTHO05D004925 7.1e-81 304.7 264 55.7
Sopen08g004380 Solanum pennellii HOM05D003990 ORTHO05D004925 7.1e-81 304.7 265 54.0
TWI60G1311 Tripterygium wilfordii HOM05D003990 ORTHO05D004925 7.1e-81 304.7 261 57.9
Aqoxy7G00029 Aquilegia oxysepala HOM05D003990 ORTHO05D004925 9.3e-81 304.3 257 58.0
Gorai.003G075400 Gossypium raimondii HOM05D003990 ORTHO05D004925 1.2e-80 303.9 264 56.1
PSO384G4439 Papaver somniferum HOM05D003990 ORTHO05D004925 1.2e-80 303.9 270 55.2
Solyc08g008530.1 Solanum lycopersicum HOM05D003990 ORTHO05D004925 1.2e-80 303.9 265 53.6
Dinv38683 Davidia involucrata HOM05D003990 ORTHO05D001284 2.1e-80 303.1 264 56.1
Rhsim02G0251300 Rhododendron simsii HOM05D003990 ORTHO05D004925 2.1e-80 303.1 253 59.3
CSS0010282 Camellia sinensis var. sinensis HOM05D003990 ORTHO05D004925 4.6e-80 302.0 265 55.1
CSS0021441 Camellia sinensis var. sinensis HOM05D003990 ORTHO05D004925 4.6e-80 302.0 265 55.1
Sabra03G0105900 Salix brachista HOM05D003990 ORTHO05D004925 4.6e-80 302.0 263 55.5
TPR.G36963 Trifolium pratense HOM05D003990 ORTHO05D004925 6.0e-80 301.6 263 55.5
Gohir.A02G097800 Gossypium hirsutum HOM05D003990 ORTHO05D004925 7.9e-80 301.2 264 55.7
Eucgr.D01688 Eucalyptus grandis HOM05D003990 ORTHO05D004925 1.0e-79 300.8 261 57.1
PSO135G0880 Papaver somniferum HOM05D003990 ORTHO05D004925 1.0e-79 300.8 268 55.2
Nitab4.5_0001962g0040 Nicotiana tabacum HOM05D003990 ORTHO05D004925 1.3e-79 300.4 252 55.6
Oeu022039.1 Olea europaea HOM05D003990 ORTHO05D004925 1.3e-79 300.4 254 56.3
Potri.003G145700 Populus trichocarpa HOM05D003990 ORTHO05D004925 1.3e-79 300.4 263 55.9
Gohir.D03G086700 Gossypium hirsutum HOM05D003990 ORTHO05D004925 1.8e-79 300.1 264 55.3
HanXRQChr06g0166861 Helianthus annuus HOM05D003990 ORTHO05D004925 1.8e-79 300.1 258 56.6
Sc01g0010590 Simmondsia chinensis HOM05D003990 ORTHO05D004925 1.8e-79 300.1 266 54.9
Cfa011937 Carpinus fangiana HOM05D003990 ORTHO05D004925 5.1e-79 298.5 263 56.3
Atru.chr9.1910 Acer truncatum HOM05D003990 ORTHO05D004925 8.7e-79 297.7 262 55.0
Nitab4.5_0000673g0130 Nicotiana tabacum HOM05D003990 ORTHO05D004925 1.5e-78 297.0 252 54.4
Sed0016376 Sechium edule HOM05D003990 ORTHO05D004925 1.5e-78 297.0 251 55.8
CDE04G2232 Ceratophyllum demersum HOM05D003990 ORTHO05D004925 3.3e-78 295.8 263 55.1
CANSAT21G0847 Cannabis sativa HOM05D003990 ORTHO05D004925 4.3e-78 295.4 272 55.1
Hma1.2p1_0212F.1_g090230 Hydrangea macrophylla HOM05D003990 ORTHO05D004925 4.3e-78 295.4 262 56.5
Peaxi162Scf00102g01878 Petunia axillaris HOM05D003990 ORTHO05D000951 4.3e-78 295.4 262 56.1
Lalb_Chr17g0338551 Lupinus albus HOM05D003990 ORTHO05D004925 7.4e-78 294.7 268 54.1
CARHR006270 Cardamine hirsuta HOM05D003990 ORTHO05D004925 2.8e-77 292.7 228 61.4
CsaV3_3G000920 Cucumis sativus L. HOM05D003990 ORTHO05D004925 2.8e-77 292.7 253 54.2
DCAR_009092 Daucus carota HOM05D003990 ORTHO05D004925 4.8e-77 292.0 264 53.4
Ah.12g053140 Amaranthus hybridus HOM05D003990 ORTHO05D004925 6.2e-77 291.6 268 51.9
CiPaw.11G113600 Carya illinoinensis HOM05D003990 ORTHO05D004925 1.8e-76 290.0 262 56.5
Ciclev10020878m.g Citrus clementina HOM05D003990 ORTHO05D004925 1.8e-76 290.0 258 54.3
MELO3C013779.2 Cucumis melo HOM05D003990 ORTHO05D004925 6.9e-76 288.1 253 53.4
ATR0620G013 Amborella trichopoda HOM05D003990 ORTHO05D004925 1.2e-75 287.3 266 53.8
Duzib084G0313 Durio zibethinus HOM05D003990 ORTHO05D004925 1.5e-75 287.0 257 53.7
CARHR231480 Cardamine hirsuta HOM05D003990 ORTHO05D004925 2.0e-75 286.6 181 77.3
MBI12_g30966_MAGBIO Magnolia biondii HOM05D003990 ORTHO05D004925 2.6e-75 286.2 255 54.5
MSTRG.13719 Avicennia marina HOM05D003990 ORTHO05D004925 1.7e-74 283.5 262 52.7
Lj8A201T86 Lonicera japonica HOM05D003990 ORTHO05D004925 1.2e-72 277.3 233 55.8
Sc01g0010580 Simmondsia chinensis HOM05D003990 ORTHO05D004925 1.2e-72 277.3 268 52.6
COL.COLO4_10784 Corchorus olitorius HOM05D003990 ORTHO05D004925 1.6e-72 276.9 256 52.7
Oeu022040.1 Olea europaea HOM05D003990 ORTHO05D004925 1.6e-72 276.9 257 51.4
QL02p029171 Quercus lobata HOM05D003990 ORTHO05D004925 1.0e-71 274.2 262 53.4
AT4G24080 Arabidopsis thaliana HOM05D003990 ORTHO05D004925 5.1e-71 271.9 166 80.1
QL02p029158 Quercus lobata HOM05D003990 ORTHO05D004925 6.7e-71 271.6 263 53.6
Zm00001eb103220 Zea mays HOM05D003990 ORTHO05D004925 1.1e-70 270.8 275 48.7
Ah.12g053130 Amaranthus hybridus HOM05D003990 ORTHO05D004925 1.9e-70 270.0 263 51.0
HPP92_008886 Vanilla planifolia HOM05D003990 ORTHO05D004925 3.3e-70 269.2 261 52.1
Sp7g22040 Schrenkiella parvula HOM05D003990 ORTHO05D004925 1.3e-69 267.3 166 75.9
Os09g0529900 Oryza sativa ssp. japonica HOM05D003990 ORTHO05D004925 4.8e-69 265.4 274 50.4
arahy.Tifrunner.gnm1.ann1.LQZ0GD Arachis hypogaea HOM05D003990 ORTHO05D004925 1.1e-68 264.2 252 52.0
arahy.Tifrunner.gnm1.ann1.ZCAA4H Arachis hypogaea HOM05D003990 ORTHO05D004925 1.1e-68 264.2 252 52.0
FvH4_5g11021 Fragaria vesca HOM05D003990 ORTHO05D004925 1.8e-68 263.5 253 52.2
Nn1g00366 Nelumbo nucifera HOM05D003990 ORTHO05D004925 1.8e-68 263.5 265 50.9
AUR62019906 Chenopodium quinoa HOM05D003990 ORTHO05D004925 6.9e-68 261.5 257 49.8
AUR62007042 Chenopodium quinoa HOM05D003990 ORTHO05D004925 9.0e-68 261.2 251 51.4
Ca_12579_v3 Cicer arietinum L. HOM05D003990 ORTHO05D004925 9.0e-68 261.2 210 58.6
EL10Ac5g12452 Beta vulgaris HOM05D003990 ORTHO05D004925 4.5e-67 258.8 263 49.4
SEGI_30656 Sequoiadendron giganteum HOM05D003990 ORTHO05D004925 1.0e-63 247.7 263 46.8
AUR62019907 Chenopodium quinoa HOM05D003990 ORTHO05D004925 1.8e-63 246.9 217 54.4
arahy.Tifrunner.gnm1.ann1.3SR05H Arachis hypogaea HOM05D003990 ORTHO05D004925 3.0e-63 246.1 252 48.8
arahy.Tifrunner.gnm1.ann1.UPJ447 Arachis hypogaea HOM05D003990 ORTHO05D004925 3.0e-63 246.1 252 48.8
COL.COLO4_10783 Corchorus olitorius HOM05D003990 ORTHO05D004925 1.5e-62 243.8 231 52.8
Psat6g044760 Pisum sativum HOM05D003990 ORTHO05D004925 1.5e-62 243.8 216 53.7
arahy.Tifrunner.gnm1.ann1.IT3SMZ Arachis hypogaea HOM05D003990 ORTHO05D004925 5.7e-62 241.9 265 46.8
arahy.Tifrunner.gnm1.ann1.Y0R09G Arachis hypogaea HOM05D003990 ORTHO05D004925 5.7e-62 241.9 265 46.8
AagrBONN_evm.TU.Sc2ySwM_117.985 Anthoceros agrestis HOM05D003990 ORTHO05D004925 7.4e-62 241.5 254 47.6
AUR62007043 Chenopodium quinoa HOM05D003990 ORTHO05D004925 3.7e-61 239.2 218 53.2
Pp3c17_4700 Physcomitrium patens HOM05D003990 ORTHO05D004925 6.3e-61 238.4 261 44.4
Mapoly0141s0022 Marchantia polymorpha HOM05D003990 ORTHO05D004925 1.4e-60 237.3 253 49.0
Aa31LG6G7290 Aethionema arabicum HOM05D003990 ORTHO05D004925 6.9e-60 235.0 156 72.4
vmacro11510 Vaccinium macrocarpon HOM05D003990 ORTHO05D004925 6.9e-60 235.0 263 48.7
EL10Ac5g12450 Beta vulgaris HOM05D003990 ORTHO05D004925 2.6e-59 233.0 216 50.9
Glyma.07G166800 Glycine max HOM05D003990 ORTHO05D004925 2.6e-59 233.0 169 63.3
Sc16g0011220 Simmondsia chinensis HOM05D003990 ORTHO05D004925 6.5e-58 228.4 243 49.4
Migut.O00797 Erythranthe guttata HOM05D003990 ORTHO05D004925 4.2e-57 225.7 189 56.6
Haze_09152 Corylus avellana HOM05D003990 ORTHO05D004925 8.8e-55 218.0 215 53.0
arahy.Tifrunner.gnm1.ann1.UE00R2 Arachis hypogaea HOM05D003990 ORTHO05D004925 3.4e-51 206.1 264 46.2
arahy.Tifrunner.gnm1.ann1.E0UK9T Arachis hypogaea HOM05D003990 ORTHO05D004925 5.0e-50 202.2 259 43.6
arahy.Tifrunner.gnm1.ann1.VJUY72 Arachis hypogaea HOM05D003990 ORTHO05D004925 8.5e-50 201.4 259 42.9
Thecc.03G222500 Theobroma cacao HOM05D003990 ORTHO05D004925 3.3e-46 189.5 163 53.4
arahy.Tifrunner.gnm1.ann1.QV8INP Arachis hypogaea HOM05D003990 ORTHO05D004925 7.7e-43 178.3 267 43.1
unitig_52.g17196 Utricularia gibba HOM05D003990 ORTHO05D004925 7.7e-43 178.3 167 52.1
Zm00001eb207470 Zea mays HOM05D003990 ORTHO05D004925 9.4e-41 171.4 234 40.6
QL02p029191 Quercus lobata HOM05D003990 ORTHO05D004925 3.9e-39 166.0 402 31.1
CDE07G1159 Ceratophyllum demersum HOM05D003990 ORTHO05D004925 1.3e-37 161.0 254 39.8
Thhalv10027505m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 1.6e-35 154.1 109 73.4
Potri.001G084900 Populus trichocarpa HOM05D003990 ORTHO05D004925 2.2e-34 150.2 137 55.5
FAN18G2679 Fragaria x ananassa HOM05D003990 ORTHO05D004925 8.0e-32 141.7 109 63.3
PRCOL_00003301 Prasinoderma coloniale HOM05D003990 ORTHO05D004925 3.0e-31 139.8 237 38.0
Zm00001eb366680 Zea mays HOM05D003990 ORTHO05D004925 9.1e-28 128.3 234 35.0
CAN.G479.14 Capsicum annuum HOM05D003990 ORTHO05D004925 2.5e-25 120.2 113 52.2
AagrBONN_evm.TU.Sc2ySwM_228.2729 Anthoceros agrestis HOM05D003990 ORTHO05D004925 1.8e-23 114.0 219 33.3
Hma1.2p1_0440F.1_g153760 Hydrangea macrophylla HOM05D003990 ORTHO05D004925 3.0e-23 113.2 96 53.1
arahy.Tifrunner.gnm1.ann1.R8SYM2 Arachis hypogaea HOM05D003990 ORTHO05D004925 4.5e-19 99.4 115 45.2
Cre01.g015550 Chlamydomonas reinhardtii HOM05D003990 ORTHO05D004925 1.0e-18 98.2 189 34.9
Cfa021766 Carpinus fangiana HOM05D003990 ORTHO05D004925 1.1e-17 94.7 211 29.9
AT4G24070 Arabidopsis thaliana HOM05D003990 ORTHO05D004925 3.6e-16 89.7 62 69.4
FAN18G2309 Fragaria x ananassa HOM05D003990 ORTHO05D004925 4.7e-16 89.4 70 57.1
Haze_16436 Corylus avellana HOM05D003990 ORTHO05D004925 1.8e-15 87.4 180 33.3
Zm00001eb314200 Zea mays HOM05D003990 ORTHO05D004925 1.8e-15 87.4 216 27.3
Duzib068G0872 Durio zibethinus HOM05D003990 ORTHO05D004925 2.0e-11 73.9 86 46.5
arahy.Tifrunner.gnm1.ann1.S5BUNY Arachis hypogaea HOM05D003990 ORTHO05D004925 3.5e-11 73.2 65 50.8
unitig_52.g17197 Utricularia gibba HOM05D003990 ORTHO05D004925 1.2e-08 64.7 54 55.6
arahy.Tifrunner.gnm1.ann1.228U7D Arachis hypogaea HOM05D003990 ORTHO05D004925 3.6e-08 63.2 70 44.3
QL02p029160 Quercus lobata HOM05D003990 ORTHO05D004925 1.4e-07 61.2 77 45.5
AagrBONN_evm.TU.Sc2ySwM_344.3329 Anthoceros agrestis HOM05D003990 ORTHO05D071624 1.5e-06 57.8 276 24.6
Prupe.2G052300 Prunus persica HOM05D003990 ORTHO05D004925 2.6e-06 57.0 66 37.9


User provided reference genes

Program Settings