Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung01095 Brassica carinata HOM05D004051 ORTHO05D004480 8.8e-37 156.4 75 100.0
BcaC09g50935 Brassica carinata HOM05D004051 ORTHO05D004480 4.8e-35 150.6 76 97.4
Sp7g21840 Schrenkiella parvula HOM05D004051 ORTHO05D004480 4.8e-35 150.6 75 96.0
Thhalv10026982m.g Eutrema salsugineum HOM05D004051 ORTHO05D004480 6.9e-34 146.7 75 93.3
BcaNung04081 Brassica carinata HOM05D004051 ORTHO05D004480 2.0e-33 145.2 76 94.7
BcaNung04241 Brassica carinata HOM05D004051 ORTHO05D004480 1.7e-32 142.1 76 92.1
C01p19120 Brassica napus HOM05D004051 ORTHO05D004480 8.5e-32 139.8 73 94.5
BolC1t01838H Brassica oleracea HOM05D004051 ORTHO05D004480 4.2e-31 137.5 71 94.4
A01p15190 Brassica napus HOM05D004051 ORTHO05D004480 3.6e-30 134.4 74 93.2
BraA01t01457Z Brassica rapa HOM05D004051 ORTHO05D004480 3.6e-30 134.4 74 93.2
CARHR231280 Cardamine hirsuta HOM05D004051 ORTHO05D004480 1.8e-29 132.1 77 85.7
C07p53180 Brassica napus HOM05D004051 ORTHO05D004480 3.0e-29 131.3 75 85.3
AL7G29460 Arabidopsis lyrata HOM05D004051 ORTHO05D004480 5.1e-29 130.6 77 84.4
A03p54820 Brassica napus HOM05D004051 ORTHO05D004480 5.1e-29 130.6 70 90.0
BraA03t14549Z Brassica rapa HOM05D004051 ORTHO05D004480 5.1e-29 130.6 70 90.0
AT4G23885 Arabidopsis thaliana HOM05D004051 ORTHO05D004480 1.3e-27 125.9 78 83.3
Aa31LG6G7140 Aethionema arabicum HOM05D004051 ORTHO05D004480 5.9e-25 117.1 75 80.0
Carub.0007s1723 Capsella rubella HOM05D004051 ORTHO05D004480 7.7e-25 116.7 75 76.0
THA.LOC104815090 Tarenaya hassleriana HOM05D004051 ORTHO05D004480 4.2e-23 110.9 85 68.2
Gohir.D12G237933 Gossypium hirsutum HOM05D004051 ORTHO05D004480 3.3e-20 101.3 80 62.5
Gorai.008G254600 Gossypium raimondii HOM05D004051 ORTHO05D004480 3.3e-20 101.3 80 62.5
Duzib205G1876 Durio zibethinus HOM05D004051 ORTHO05D004480 5.7e-20 100.5 80 62.5
Manes.02G009700 Manihot esculenta HOM05D004051 ORTHO05D004480 2.8e-19 98.2 80 63.8
Gohir.A12G236600 Gossypium hirsutum HOM05D004051 ORTHO05D004480 6.3e-19 97.1 80 60.0
Thecc.03G298400 Theobroma cacao HOM05D004051 ORTHO05D004480 4.1e-18 94.4 80 58.8
Sed0004965 Sechium edule HOM05D004051 ORTHO05D004480 9.1e-18 93.2 80 62.5
Psat7g025560 Pisum sativum HOM05D004051 ORTHO05D004480 1.2e-17 92.8 80 58.8
Potri.003G140300 Populus trichocarpa HOM05D004051 ORTHO05D004480 1.6e-17 92.4 81 61.7
Glyma.01G225400 Glycine max HOM05D004051 ORTHO05D004480 2.6e-17 91.7 81 59.3
Gohir.D12G237800 Gossypium hirsutum HOM05D004051 ORTHO05D004480 4.5e-17 90.9 75 60.0
HanXRQChr03g0083481 Helianthus annuus HOM05D004051 ORTHO05D004480 1.0e-16 89.7 81 54.3
Prupe.5G120400 Prunus persica HOM05D004051 ORTHO05D004480 1.0e-16 89.7 82 58.5
CSS0008906 Camellia sinensis var. sinensis HOM05D004051 ORTHO05D004480 1.7e-16 89.0 81 58.0
COL.COLO4_10706 Corchorus olitorius HOM05D004051 ORTHO05D004480 2.9e-16 88.2 76 60.5
Glyma.11G017600 Glycine max HOM05D004051 ORTHO05D004480 2.9e-16 88.2 77 57.1
arahy.Tifrunner.gnm1.ann1.T1KBZJ Arachis hypogaea HOM05D004051 ORTHO05D004480 5.0e-16 87.4 77 61.0
QL02p030350 Quercus lobata HOM05D004051 ORTHO05D004480 5.0e-16 87.4 79 57.0
Duzib084G0187 Durio zibethinus HOM05D000749 ORTHO05D005685 6.5e-16 87.0 75 57.3
TWI81G0780 Tripterygium wilfordii HOM05D004051 ORTHO05D004480 6.5e-16 87.0 80 61.2
CiPaw.11G121000 Carya illinoinensis HOM05D004051 ORTHO05D004480 8.5e-16 86.7 75 58.7
TWI15G0384 Tripterygium wilfordii HOM05D004051 ORTHO05D004480 1.1e-15 86.3 80 61.2
Dinv37531 Davidia involucrata HOM05D004051 ORTHO05D004480 1.5e-15 85.9 75 58.7
Lalb_Chr05g0224141 Lupinus albus HOM05D004051 ORTHO05D004480 1.9e-15 85.5 77 55.8
Phvul.002G298100 Phaseolus vulgaris HOM05D004051 ORTHO05D004480 1.9e-15 85.5 82 56.1
Actinidia22162 Actinidia chinensis HOM05D004051 ORTHO05D004480 3.2e-15 84.7 75 61.3
arahy.Tifrunner.gnm1.ann1.E0UY0G Arachis hypogaea HOM05D004051 ORTHO05D004480 4.2e-15 84.3 77 59.7
ECA240G0536 Erigeron canadensis HOM05D004051 ORTHO05D004480 5.5e-15 84.0 78 56.4
Medtr8g099465 Medicago truncatula HOM05D004051 ORTHO05D004480 5.5e-15 84.0 70 57.1
Oeu054023.1 Olea europaea HOM05D004051 ORTHO05D004480 5.5e-15 84.0 75 60.0
FvH4_5g04640 Fragaria vesca HOM05D004051 ORTHO05D004480 9.4e-15 83.2 73 58.9
FAN18G0508 Fragaria x ananassa HOM05D004051 ORTHO05D004480 9.4e-15 83.2 73 58.9
RcHm_v2.0_Chr7g0194731 Rosa chinensis HOM05D004051 ORTHO05D004480 9.4e-15 83.2 73 58.9
Atru.chr9.1978 Acer truncatum HOM05D004051 ORTHO05D004480 1.2e-14 82.8 73 58.9
Atru.chr9.1993 Acer truncatum HOM05D004051 ORTHO05D004480 1.2e-14 82.8 73 58.9
FAN08G0063 Fragaria x ananassa HOM05D004051 ORTHO05D004480 1.2e-14 82.8 73 58.9
Actinidia04200 Actinidia chinensis HOM05D004051 ORTHO05D004480 1.6e-14 82.4 81 55.6
DCAR_006488 Daucus carota HOM05D004051 ORTHO05D004480 1.6e-14 82.4 75 57.3
LjContig00312_ERROPOS870357g0027890 Lotus japonicus HOM05D004051 ORTHO05D004480 1.6e-14 82.4 80 53.8
TAR629G1304 Trochodendron aralioides HOM05D004051 ORTHO05D004480 1.6e-14 82.4 79 55.7
Dinv38829 Davidia involucrata HOM05D004051 ORTHO05D004480 2.1e-14 82.0 75 57.3
TPR.G25572 Trifolium pratense HOM05D004051 ORTHO05D004480 2.1e-14 82.0 74 55.4
Ciclev10023430m.g Citrus clementina HOM05D004051 ORTHO05D004480 2.7e-14 81.6 71 64.8
HanXRQChr13g0415281 Helianthus annuus HOM05D004051 ORTHO05D004480 2.7e-14 81.6 76 53.9
Lj4g0013283 Lotus japonicus HOM05D004051 ORTHO05D004480 2.7e-14 81.6 75 54.7
unitig_88.g27640 Utricularia gibba HOM05D004051 ORTHO05D004480 2.7e-14 81.6 78 51.3
MD06G1107300 Malus domestica HOM05D004051 ORTHO05D004480 4.7e-14 80.9 78 53.8
Nn1g01872 Nelumbo nucifera HOM05D004051 ORTHO05D004480 4.7e-14 80.9 79 54.4
CSS0023187 Camellia sinensis var. sinensis HOM05D004051 ORTHO05D004480 6.1e-14 80.5 75 57.3
PGR042G1109 Punica granatum HOM05D004051 ORTHO05D004480 6.1e-14 80.5 71 59.2
GSVIVG01019535001 Vitis vinifera HOM05D004051 ORTHO05D004480 6.1e-14 80.5 85 51.8
CDE09G0659 Ceratophyllum demersum HOM05D004051 ORTHO05D004480 8.0e-14 80.1 83 50.6
Migut.A00641 Erythranthe guttata HOM05D004051 ORTHO05D004480 8.0e-14 80.1 80 55.0
Solyc08g082390.3 Solanum lycopersicum HOM05D004051 ORTHO05D004480 1.0e-13 79.7 78 52.6
AUR62019374 Chenopodium quinoa HOM05D004051 ORTHO05D004480 1.4e-13 79.3 84 54.8
Hma1.2p1_1461F.1_g285050 Hydrangea macrophylla HOM05D004051 ORTHO05D004480 1.4e-13 79.3 77 55.8
Hma1.2p1_2808F.1_g328863 Hydrangea macrophylla HOM05D004051 ORTHO05D004480 1.4e-13 79.3 77 55.8
Oeu063517.1 Olea europaea HOM05D004051 ORTHO05D004480 1.4e-13 79.3 82 53.7
Sopen08g030650 Solanum pennellii HOM05D004051 ORTHO05D004480 1.4e-13 79.3 78 52.6
Atru.chr1.148 Acer truncatum HOM05D004051 ORTHO05D004480 1.8e-13 79.0 79 57.0
CiPaw.05G255100 Carya illinoinensis HOM05D004051 ORTHO05D004480 1.8e-13 79.0 79 55.7
EL10Ac5g12918 Beta vulgaris HOM05D004051 ORTHO05D004480 3.0e-13 78.2 75 56.0
Dinv29295 Davidia involucrata HOM05D004051 ORTHO05D004480 3.0e-13 78.2 83 53.0
Phvul.002G164300 Phaseolus vulgaris HOM05D004051 ORTHO05D004480 3.0e-13 78.2 77 50.6
Ah.07g197450 Amaranthus hybridus HOM05D004051 ORTHO05D004480 4.0e-13 77.8 76 57.9
CDE02G2345 Ceratophyllum demersum HOM05D004051 ORTHO05D004480 5.2e-13 77.4 77 53.2
Solyc08g008330.3 Solanum lycopersicum HOM05D004051 ORTHO05D004480 5.2e-13 77.4 83 51.8
Sopen08g004210 Solanum pennellii HOM05D004051 ORTHO05D004480 5.2e-13 77.4 83 51.8
CiPaw.05G252200 Carya illinoinensis HOM05D004051 ORTHO05D004480 6.8e-13 77.0 79 54.4
CiPaw.05G255500 Carya illinoinensis HOM05D004051 ORTHO05D004480 8.8e-13 76.6 79 54.4
Hund04853 Selenicereus undatus HOM05D004051 ORTHO05D004480 8.8e-13 76.6 82 57.3
QL09p009613 Quercus lobata HOM05D004051 ORTHO05D004480 1.5e-12 75.9 81 54.3
arahy.Tifrunner.gnm1.ann1.ZDLG37 Arachis hypogaea HOM05D004051 ORTHO05D004480 2.0e-12 75.5 75 56.0
vmacro11468 Vaccinium macrocarpon HOM05D004051 ORTHO05D004480 2.0e-12 75.5 76 48.7
Rhsim09G0205000 Rhododendron simsii HOM05D004051 ORTHO05D004480 3.4e-12 74.7 79 54.4
Sed0015186 Sechium edule HOM05D004051 ORTHO05D004480 3.4e-12 74.7 66 59.1
SGA_v2.0_scaffold96G29014 Striga asiatica HOM05D004051 ORTHO05D004480 3.4e-12 74.7 80 50.0
ClCG01G001670 Citrullus lanatus HOM05D004051 ORTHO05D004480 5.7e-12 73.9 85 49.4
Cc08_g16090 Coffea canephora HOM05D004051 ORTHO05D004480 5.7e-12 73.9 77 55.8
Gohir.D08G104000 Gossypium hirsutum HOM05D004051 ORTHO05D004480 5.7e-12 73.9 91 48.4
Gorai.004G111400 Gossypium raimondii HOM05D004051 ORTHO05D004480 5.7e-12 73.9 91 48.4
Sc13g0009750 Simmondsia chinensis HOM05D004051 ORTHO05D004480 5.7e-12 73.9 78 52.6
GSVIVG01038715001 Vitis vinifera HOM05D004051 ORTHO05D004480 5.7e-12 73.9 70 55.7
FvH4_7g31780 Fragaria vesca HOM05D004051 ORTHO05D004480 7.5e-12 73.6 76 51.3
FAN01G1391 Fragaria x ananassa HOM05D004051 ORTHO05D004480 7.5e-12 73.6 76 51.3
Manes.06G159300 Manihot esculenta HOM05D004051 ORTHO05D004480 7.5e-12 73.6 74 54.1
Nn3g19011 Nelumbo nucifera HOM05D004051 ORTHO05D004480 9.7e-12 73.2 74 54.1
PSO063G6907 Papaver somniferum HOM05D004051 ORTHO05D004480 9.7e-12 73.2 71 54.9
CANSAT21G2574 Cannabis sativa HOM05D004051 ORTHO05D004480 1.3e-11 72.8 74 52.7
Eucgr.E00869 Eucalyptus grandis HOM05D004051 ORTHO05D004480 1.3e-11 72.8 71 59.2
MD06G1107200 Malus domestica HOM05D004051 ORTHO05D004480 1.3e-11 72.8 73 49.3
Sed0007169 Sechium edule HOM05D004051 ORTHO05D004480 1.3e-11 72.8 84 51.2
FAN13G0943 Fragaria x ananassa HOM05D004051 ORTHO05D004480 1.7e-11 72.4 70 54.3
RcHm_v2.0_Chr1g0381011 Rosa chinensis HOM05D004051 ORTHO05D004480 1.7e-11 72.4 76 51.3
Thecc.03G195700 Theobroma cacao HOM05D004051 ORTHO05D004480 1.7e-11 72.4 89 50.6
Ca_17505_v3 Cicer arietinum L. HOM05D000749 ORTHO05D005685 2.2e-11 72.0 72 55.6
MD01G1219400 Malus domestica HOM05D004051 ORTHO05D004480 2.8e-11 71.6 74 51.4
PGSC0003DMG400012279 Solanum tuberosum HOM05D004051 ORTHO05D004480 2.8e-11 71.6 79 51.9
VMungo0251G1927 Vigna mungo HOM05D000749 ORTHO05D005685 2.8e-11 71.6 76 50.0
BcaNung01214 Brassica carinata HOM05D004051 ORTHO05D004480 3.7e-11 71.2 78 52.6
A02p40750 Brassica napus HOM05D004051 ORTHO05D004480 3.7e-11 71.2 82 50.0
FAN10G0142 Fragaria x ananassa HOM05D004051 ORTHO05D004480 3.7e-11 71.2 76 50.0
FAN18G2387 Fragaria x ananassa HOM05D004051 ORTHO05D004480 4.8e-11 70.9 67 55.2
Potri.012G011600 Populus trichocarpa HOM05D004051 ORTHO05D004480 4.8e-11 70.9 80 48.8
Gohir.A08G096024 Gossypium hirsutum HOM05D004051 ORTHO05D004480 6.3e-11 70.5 91 47.3
CARHR189350 Cardamine hirsuta HOM05D004051 ORTHO05D004480 8.3e-11 70.1 76 52.6
FAN10G1914 Fragaria x ananassa HOM05D004051 ORTHO05D004480 8.3e-11 70.1 88 44.3
Peaxi162Scf00102g01842 Petunia axillaris HOM05D004051 ORTHO05D004480 8.3e-11 70.1 79 46.8
Sabra03G0101300 Salix brachista HOM05D004051 ORTHO05D004480 8.3e-11 70.1 86 45.3
BcaNung01808 Brassica carinata HOM05D004051 ORTHO05D004480 1.1e-10 69.7 82 50.0
CsaV3_5G001830 Cucumis sativus L. HOM05D000749 ORTHO05D005685 1.1e-10 69.7 91 46.2
Sc01g0010310 Simmondsia chinensis HOM05D004051 ORTHO05D004480 1.1e-10 69.7 82 50.0
Haze_09066 Corylus avellana HOM05D004051 ORTHO05D004480 1.4e-10 69.3 60 58.3
Actinidia03163 Actinidia chinensis HOM05D004051 ORTHO05D004480 2.4e-10 68.6 81 49.4
Carub.0006s2191 Capsella rubella HOM05D004051 ORTHO05D004480 2.4e-10 68.6 76 52.6
SalBow1G7115 Salvia bowleyana HOM05D004051 ORTHO05D004480 2.4e-10 68.6 79 48.1
DCAR_010606 Daucus carota HOM05D004051 ORTHO05D004480 3.1e-10 68.2 73 53.4
Sp2g23150 Schrenkiella parvula HOM05D004051 ORTHO05D004480 3.1e-10 68.2 84 50.0
AL6G35560 Arabidopsis lyrata HOM05D004051 ORTHO05D004480 4.1e-10 67.8 79 53.2
AT5G24165 Arabidopsis thaliana HOM05D004051 ORTHO05D004480 4.1e-10 67.8 76 51.3
SalBow1G2120 Salvia bowleyana HOM05D004051 ORTHO05D004480 4.1e-10 67.8 79 48.1
Hund14219 Selenicereus undatus HOM05D004051 ORTHO05D004480 4.1e-10 67.8 71 54.9
PGSC0003DMG400005791 Solanum tuberosum HOM05D004051 ORTHO05D004480 4.1e-10 67.8 84 46.4
BcaB07g29898 Brassica carinata HOM05D004051 ORTHO05D004480 5.3e-10 67.4 87 48.3
Thhalv10005218m.g Eutrema salsugineum HOM05D004051 ORTHO05D004480 7.0e-10 67.0 87 48.3
AUR62010843 Chenopodium quinoa HOM05D004051 ORTHO05D004480 9.1e-10 66.6 70 54.3
PGR042G3499 Punica granatum HOM05D004051 ORTHO05D004480 9.1e-10 66.6 79 43.0
HPP92_020160 Vanilla planifolia HOM05D004051 ORTHO05D004480 1.2e-09 66.2 98 42.9
MELO3C005880.2 Cucumis melo HOM05D004051 ORTHO05D004480 2.7e-09 65.1 78 50.0
Hund11389 Selenicereus undatus HOM05D004051 ORTHO05D004480 2.7e-09 65.1 71 57.7
Ciclev10006352m.g Citrus clementina HOM05D004051 ORTHO05D004480 4.5e-09 64.3 75 49.3
ClCG01G000480 Citrullus lanatus HOM05D004051 ORTHO05D004480 5.9e-09 63.9 79 45.6
EL10Ac3g05304 Beta vulgaris HOM05D004051 ORTHO05D004480 1.0e-08 63.2 78 47.4
Ah.12g052570 Amaranthus hybridus HOM05D000749 ORTHO05D005685 1.7e-08 62.4 71 52.1
FAN03G1224 Fragaria x ananassa HOM05D004051 ORTHO05D004480 1.7e-08 62.4 71 46.5
THA.LOC104821369 Tarenaya hassleriana HOM05D004051 ORTHO05D004480 5.0e-08 60.8 84 41.7
HPP92_020177 Vanilla planifolia HOM05D004051 ORTHO05D004480 1.1e-07 59.7 95 41.1
Aa31LG11G3430 Aethionema arabicum HOM05D004051 ORTHO05D004480 2.5e-07 58.5 78 44.9
Lj2A167G43 Lonicera japonica HOM05D004051 ORTHO05D004480 7.2e-07 57.0 40 65.0
MBI06_g08462_MAGBIO Magnolia biondii HOM05D004051 ORTHO05D004480 7.2e-07 57.0 80 42.5
AagrBONN_evm.TU.Sc2ySwM_369.239 Anthoceros agrestis HOM05D004051 ORTHO05D004480 9.4e-07 56.6 73 46.6
AUR62006115 Chenopodium quinoa HOM05D004051 ORTHO05D004480 9.4e-07 56.6 28 89.3
A06p35000 Brassica napus HOM05D004051 ORTHO05D004480 1.2e-06 56.2 82 43.9
C07p43550 Brassica napus HOM05D004051 ORTHO05D004480 1.2e-06 56.2 82 43.9


User provided reference genes

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