Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung01050 Brassica carinata HOM05D007942 ORTHO05D010045 5.6e-43 177.2 87 100.0
A01p14720 Brassica napus HOM05D007942 ORTHO05D010045 7.3e-35 150.2 88 86.4
BraA01t01411Z Brassica rapa HOM05D007942 ORTHO05D010045 7.3e-35 150.2 88 86.4
BcaC09g50992 Brassica carinata HOM05D007942 ORTHO05D010045 2.1e-34 148.7 87 83.9
C01p18220 Brassica napus HOM05D007942 ORTHO05D010045 5.2e-33 144.1 88 83.0
BolC1t01748H Brassica oleracea HOM05D007942 ORTHO05D010045 5.2e-33 144.1 88 83.0
Thhalv10026690m.g Eutrema salsugineum HOM05D007942 ORTHO05D010045 4.4e-32 141.0 87 78.2
AT4G23493 Arabidopsis thaliana HOM05D007942 ORTHO05D010045 1.6e-29 132.5 88 76.1
CARHR230820 Cardamine hirsuta HOM05D007942 ORTHO05D010045 3.5e-29 131.3 88 75.0
AL7G29970 Arabidopsis lyrata HOM05D007942 ORTHO05D010045 4.6e-29 131.0 88 75.0
Carub.0007s1768 Capsella rubella HOM05D007942 ORTHO05D010045 3.9e-28 127.9 87 71.3
BcaB03g11761 Brassica carinata HOM05D007942 ORTHO05D010045 1.1e-27 126.3 87 70.1
BcaB03g11762 Brassica carinata HOM05D007942 ORTHO05D010045 1.1e-27 126.3 87 70.1
A08p16150 Brassica napus HOM05D007942 ORTHO05D010045 9.5e-27 123.2 88 70.5
BcaC01g00815 Brassica carinata HOM05D007942 ORTHO05D010045 1.2e-26 122.9 85 69.4
C03p84680 Brassica napus HOM05D007942 ORTHO05D010045 6.2e-26 120.6 86 69.8
BolC3t20755H Brassica oleracea HOM05D007942 ORTHO05D010045 6.2e-26 120.6 86 69.8
Aa31LG6G6680 Aethionema arabicum HOM05D007942 ORTHO05D010045 1.1e-25 119.8 85 70.6
THA.LOC104814669 Tarenaya hassleriana HOM05D007942 ORTHO05D010045 8.9e-17 90.1 90 54.4
Nitab4.5_0002282g0090 Nicotiana tabacum HOM05D007942 ORTHO05D010045 5.4e-14 80.9 79 58.2
Nitab4.5_0000769g0190 Nicotiana tabacum HOM05D007942 ORTHO05D010045 2.7e-13 78.6 85 49.4
Sopen08g029790 Solanum pennellii HOM05D007942 ORTHO05D010045 3.5e-13 78.2 85 45.9
MD06G1089100 Malus domestica HOM05D007942 ORTHO05D010045 1.0e-12 76.6 76 51.3
Ciclev10023096m.g Citrus clementina HOM05D007942 ORTHO05D010045 1.3e-12 76.3 76 52.6
Solyc08g081455.1 Solanum lycopersicum HOM05D007942 ORTHO05D010045 1.3e-12 76.3 76 52.6
PGSC0003DMG400012189 Solanum tuberosum HOM05D007942 ORTHO05D010045 1.7e-12 75.9 76 53.9
Peaxi162Scf00074g01832 Petunia axillaris HOM05D007942 ORTHO05D010045 3.9e-12 74.7 62 54.8
Gorai.004G139100 Gossypium raimondii HOM05D007942 ORTHO05D010045 1.5e-11 72.8 78 47.4
Gohir.A08G115301 Gossypium hirsutum HOM05D007942 ORTHO05D010045 3.3e-11 71.6 76 48.7
AUR62010730 Chenopodium quinoa HOM05D007942 ORTHO05D010045 4.3e-11 71.2 75 44.0
SGA_v2.0_scaffold111G31481 Striga asiatica HOM05D007942 ORTHO05D010045 5.6e-11 70.9 80 43.8
CAN.G532.20 Capsicum annuum HOM05D007942 ORTHO05D010045 9.6e-11 70.1 64 54.7
Psat2g183000 Pisum sativum HOM05D007942 ORTHO05D010045 2.8e-10 68.6 80 42.5
Hund11441 Selenicereus undatus HOM05D007942 ORTHO05D010045 3.6e-10 68.2 74 45.9
Glyma.01G221800 Glycine max HOM05D007942 ORTHO05D010045 8.1e-10 67.0 76 46.1
Thecc.03G284800 Theobroma cacao HOM05D007942 ORTHO05D010045 8.1e-10 67.0 77 45.5
Lsat_1_v5_gn_6_85240 Lactuca sativa HOM05D007942 ORTHO05D010045 1.4e-09 66.2 75 42.7
TWI81G0525 Tripterygium wilfordii HOM05D007942 ORTHO05D010045 1.4e-09 66.2 80 45.0
Lsat_1_v5_gn_6_85200 Lactuca sativa HOM05D007942 ORTHO05D010045 1.8e-09 65.9 60 46.7
Cc03_g15820 Coffea canephora HOM05D007942 ORTHO05D010045 2.4e-09 65.5 85 42.4
Cc08_g15120 Coffea canephora HOM05D007942 ORTHO05D010045 2.4e-09 65.5 85 42.4
DCAR_004614 Daucus carota HOM05D007942 ORTHO05D010045 2.4e-09 65.5 60 53.3
HanXRQChr13g0415991 Helianthus annuus HOM05D007942 ORTHO05D010045 3.1e-09 65.1 61 45.9
Manes.02G018400 Manihot esculenta HOM05D007942 ORTHO05D010045 3.1e-09 65.1 76 44.7
ClCG01G002420 Citrullus lanatus HOM05D007942 ORTHO05D010045 4.0e-09 64.7 75 42.7
Medtr5g010040 Medicago truncatula HOM05D007942 ORTHO05D010045 1.2e-08 63.2 77 41.6
GSVIVG01019402001 Vitis vinifera HOM05D007942 ORTHO05D010045 1.2e-08 63.2 77 44.2
ECA240G3258 Erigeron canadensis HOM05D007942 ORTHO05D010045 1.5e-08 62.8 61 44.3
Migut.E01201 Erythranthe guttata HOM05D007942 ORTHO05D010045 1.5e-08 62.8 84 40.5
Prupe.5G105000 Prunus persica HOM05D007942 ORTHO05D010045 3.4e-08 61.6 81 39.5
TPR.G6630 Trifolium pratense HOM05D007942 ORTHO05D010045 4.4e-08 61.2 78 46.2
Eucgr.E00650 Eucalyptus grandis HOM05D007942 ORTHO05D010045 7.6e-08 60.5 73 46.6
Lalb_Chr05g0211711 Lupinus albus HOM05D007942 ORTHO05D010045 9.9e-08 60.1 80 41.2
SalBow8G0610 Salvia bowleyana HOM05D007942 ORTHO05D010045 9.9e-08 60.1 79 41.8
Ah.07g196590 Amaranthus hybridus HOM05D007942 ORTHO05D010045 1.3e-07 59.7 71 36.6
MELO3C005703.2 Cucumis melo HOM05D007942 ORTHO05D010045 2.2e-07 58.9 75 40.0
Potri.003G131550 Populus trichocarpa HOM05D007942 ORTHO05D010045 2.2e-07 58.9 77 39.0
RcHm_v2.0_Chr7g0196851 Rosa chinensis HOM05D007942 ORTHO05D010045 2.2e-07 58.9 78 42.3
Atru.chr9.2136 Acer truncatum HOM05D007942 ORTHO05D010045 2.9e-07 58.5 77 40.3
Haze_08827 Corylus avellana HOM05D007942 ORTHO05D010045 2.9e-07 58.5 80 42.5
Ca_24542_v3 Cicer arietinum L. HOM05D007942 ORTHO05D010045 4.9e-07 57.8 80 40.0
vmacro13966 Vaccinium macrocarpon HOM05D007942 ORTHO05D010045 6.4e-07 57.4 61 44.3
Dinv37608 Davidia involucrata HOM05D007942 ORTHO05D010045 1.4e-06 56.2 62 43.5
Duzib205G1349 Durio zibethinus HOM05D007942 ORTHO05D010045 1.9e-06 55.8 63 44.4
EL10Ac5g12820 Beta vulgaris HOM05D007942 ORTHO05D010045 3.2e-06 55.1 64 40.6
Cpa.g.sc180.26 Carica papaya HOM05D007942 ORTHO05D010045 4.2e-06 54.7 77 35.1
CsaV3_5G002530 Cucumis sativus L. HOM05D007942 ORTHO05D010045 9.3e-06 53.5 51 47.1


User provided reference genes

Program Settings