Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung00981 Brassica carinata HOM05D005411 ORTHO05D006463 2.8e-97 358.6 181 100.0
A01p14570 Brassica napus HOM05D005411 ORTHO05D006463 5.9e-47 191.4 155 72.3
BraA01t01399Z Brassica rapa HOM05D005411 ORTHO05D006463 5.9e-47 191.4 155 72.3
BcaC09g51012 Brassica carinata HOM05D005411 ORTHO05D006463 2.3e-46 189.5 155 71.6
BolC1t01733H Brassica oleracea HOM05D005411 ORTHO05D006463 2.3e-46 189.5 155 71.6
Carub.0007s1784 Capsella rubella HOM05D005411 ORTHO05D006463 2.0e-39 166.4 156 66.0
CARHR230670 Cardamine hirsuta HOM05D005411 ORTHO05D006463 2.0e-39 166.4 156 64.7
Thhalv10026496m.g Eutrema salsugineum HOM05D005411 ORTHO05D006463 5.9e-39 164.9 156 67.3
AL7G30140 Arabidopsis lyrata HOM05D005411 ORTHO05D006463 7.8e-39 164.5 156 64.7
AT4G23330 Arabidopsis thaliana HOM05D005411 ORTHO05D006463 4.3e-37 158.7 156 62.8
A03p54210 Brassica napus HOM05D005411 ORTHO05D006463 4.3e-37 158.7 158 62.7
BraA03t14482Z Brassica rapa HOM05D000022 ORTHO05D000071 3.6e-36 155.6 155 62.6
BcaNung03266 Brassica carinata HOM05D005411 ORTHO05D006463 1.8e-35 153.3 156 63.5
BcaC03g18356 Brassica carinata HOM05D005411 ORTHO05D006463 2.3e-35 152.9 156 60.9
C02p64340 Brassica napus HOM05D005411 ORTHO05D006463 2.3e-35 152.9 156 60.9
BcaNung01456 Brassica carinata HOM05D005411 ORTHO05D006463 1.2e-34 150.6 155 60.0
C07p52580 Brassica napus HOM05D000022 ORTHO05D000071 1.2e-34 150.6 155 60.0
BolC7t45755H Brassica oleracea HOM05D005411 ORTHO05D006463 1.2e-34 150.6 155 60.0
THA.LOC104814574 Tarenaya hassleriana HOM05D005411 ORTHO05D006463 1.4e-32 143.7 143 62.2
C01p18020 Brassica napus HOM05D005411 ORTHO05D006463 1.6e-28 130.2 119 65.5
Ciclev10022634m.g Citrus clementina HOM05D005411 ORTHO05D006463 1.3e-25 120.6 130 56.9
MD06G1084200 Malus domestica HOM05D005411 ORTHO05D006463 2.9e-25 119.4 144 52.8
Aa31LG9G10800 Aethionema arabicum HOM05D005411 ORTHO05D006463 6.4e-25 118.2 114 62.3
QL12p032900 Quercus lobata HOM05D005411 ORTHO05D006463 8.3e-25 117.9 132 57.6
Nitab4.5_0001615g0100 Nicotiana tabacum HOM05D005411 ORTHO05D006463 1.4e-24 117.1 142 50.0
CiPaw.11G134900 Carya illinoinensis HOM05D005411 ORTHO05D006463 1.9e-24 116.7 160 49.4
Nitab4.5_0013184g0010 Nicotiana tabacum HOM05D005411 ORTHO05D006463 1.9e-24 116.7 142 50.0
Actinidia02004 Actinidia chinensis HOM05D005411 ORTHO05D006463 2.4e-24 116.3 142 52.1
Hma1.2p1_0377F.1_g139300 Hydrangea macrophylla HOM05D005411 ORTHO05D006463 3.2e-24 115.9 135 54.8
Gohir.A03G016600 Gossypium hirsutum HOM05D005411 ORTHO05D006463 7.0e-24 114.8 149 49.7
Gorai.003G158500 Gossypium raimondii HOM05D005411 ORTHO05D006463 7.0e-24 114.8 157 48.4
Manes.02G019300 Manihot esculenta HOM05D005411 ORTHO05D006463 2.1e-23 113.2 155 48.4
PGSC0003DMG403012339 Solanum tuberosum HOM05D005411 ORTHO05D006463 2.1e-23 113.2 147 49.7
FvH4_5g02510 Fragaria vesca HOM05D005411 ORTHO05D006463 2.7e-23 112.8 123 57.7
PGR042G1580 Punica granatum HOM05D005411 ORTHO05D006463 2.7e-23 112.8 133 53.4
Peaxi162Scf00119g00941 Petunia axillaris HOM05D005411 ORTHO05D006463 3.5e-23 112.5 142 48.6
Eucgr.H02261 Eucalyptus grandis HOM05D005411 ORTHO05D006463 4.6e-23 112.1 155 49.0
GSVIVG01019751001 Vitis vinifera HOM05D005411 ORTHO05D006463 4.6e-23 112.1 127 55.9
Potri.001G103800 Populus trichocarpa HOM05D005411 ORTHO05D006463 6.0e-23 111.7 156 48.1
TWI60G1258 Tripterygium wilfordii HOM05D005411 ORTHO05D006463 6.0e-23 111.7 131 53.4
CSS0034062 Camellia sinensis var. sinensis HOM05D005411 ORTHO05D006463 1.0e-22 110.9 143 51.7
Cc08_g14780 Coffea canephora HOM05D005411 ORTHO05D006463 1.3e-22 110.5 155 45.8
Eucgr.L02732 Eucalyptus grandis HOM05D005411 ORTHO05D006463 1.3e-22 110.5 155 48.4
Oeu011043.2 Olea europaea HOM05D005411 ORTHO05D006463 1.3e-22 110.5 145 50.3
Solyc08g081130.4 Solanum lycopersicum HOM05D005411 ORTHO05D006463 1.3e-22 110.5 143 49.0
Sopen08g029430 Solanum pennellii HOM05D005411 ORTHO05D006463 1.3e-22 110.5 141 49.6
Migut.A00759 Erythranthe guttata HOM05D005411 ORTHO05D006463 1.7e-22 110.2 160 49.4
Dinv38942 Davidia involucrata HOM05D005411 ORTHO05D006463 2.3e-22 109.8 145 49.7
CAN.G774.50 Capsicum annuum HOM05D005411 ORTHO05D006463 3.0e-22 109.4 145 48.3
RcHm_v2.0_Chr7g0197541 Rosa chinensis HOM05D005411 ORTHO05D006463 5.1e-22 108.6 136 52.2
Actinidia14564 Actinidia chinensis HOM05D005411 ORTHO05D006463 6.6e-22 108.2 141 49.6
CANSAT78G0141 Cannabis sativa HOM05D005411 ORTHO05D006463 6.6e-22 108.2 148 50.7
Dinv38939 Davidia involucrata HOM05D005411 ORTHO05D006463 6.6e-22 108.2 130 51.5
ECA233G5385 Erigeron canadensis HOM05D005411 ORTHO05D006463 8.6e-22 107.8 143 49.7
Prupe.5G100600 Prunus persica HOM05D005411 ORTHO05D006463 1.5e-21 107.1 145 49.0
vmacro13959 Vaccinium macrocarpon HOM05D005411 ORTHO05D006463 1.9e-21 106.7 159 45.9
Lsat_1_v5_gn_6_6580 Lactuca sativa HOM05D005411 ORTHO05D006463 5.6e-21 105.1 127 52.0
PSO478G4730 Papaver somniferum HOM05D005411 ORTHO05D006463 5.6e-21 105.1 152 46.1
PSO782G3895 Papaver somniferum HOM05D005411 ORTHO05D006463 5.6e-21 105.1 152 46.1
BolC5t34770H Brassica oleracea HOM05D005411 ORTHO05D006463 1.2e-20 104.0 114 56.1
CsaV3_4G005950 Cucumis sativus L. HOM05D005411 ORTHO05D006463 1.2e-20 104.0 145 49.0
MD14G1105400 Malus domestica HOM05D005411 ORTHO05D006463 1.2e-20 104.0 143 49.0
MBI18_g42863_MAGBIO Magnolia biondii HOM05D005411 ORTHO05D006463 2.1e-20 103.2 156 45.5
ClCG07G008090 Citrullus lanatus HOM05D005411 ORTHO05D006463 2.8e-20 102.8 156 44.2
unitig_46.g18551 Utricularia gibba HOM05D005411 ORTHO05D006463 3.6e-20 102.4 159 45.3
Sed0017646 Sechium edule HOM05D005411 ORTHO05D006463 4.7e-20 102.1 131 50.4
vmacro11335 Vaccinium macrocarpon HOM05D005411 ORTHO05D006463 1.1e-19 100.9 167 43.7
vmacro22820 Vaccinium macrocarpon HOM05D005411 ORTHO05D006463 1.1e-19 100.9 167 43.7
MSTRG.25610 Avicennia marina HOM05D005411 ORTHO05D006463 1.8e-19 100.1 154 46.1
Nn1g01526 Nelumbo nucifera HOM05D005411 ORTHO05D006463 1.8e-19 100.1 143 45.5
BcaNung00977 Brassica carinata HOM05D005411 ORTHO05D006463 2.3e-19 99.8 80 70.0
Lalb_Chr09g0332851 Lupinus albus HOM05D005411 ORTHO05D006463 2.3e-19 99.8 142 45.8
HanXRQChr13g0394241 Helianthus annuus HOM05D005411 ORTHO05D006463 4.0e-19 99.0 125 50.4
Phvul.002G289800 Phaseolus vulgaris HOM05D005411 ORTHO05D006463 5.2e-19 98.6 125 48.8
SalBow4G3209 Salvia bowleyana HOM05D005411 ORTHO05D006463 5.2e-19 98.6 129 48.1
CiPaw.12G092800 Carya illinoinensis HOM05D005411 ORTHO05D006463 6.8e-19 98.2 123 52.0
Psat7g033000 Pisum sativum HOM05D005411 ORTHO05D006463 2.6e-18 96.3 127 47.2
Medtr8g098255 Medicago truncatula HOM05D005411 ORTHO05D006463 7.5e-18 94.7 122 47.5
Cfa012226 Carpinus fangiana HOM05D005411 ORTHO05D006463 9.9e-18 94.4 117 53.8
ATR0680G335 Amborella trichopoda HOM05D005411 ORTHO05D006463 2.2e-17 93.2 124 48.4
FAN04G3034 Fragaria x ananassa HOM05D005411 ORTHO05D006463 2.2e-17 93.2 108 54.6
BcaB05g22557 Brassica carinata HOM05D002513 ORTHO05D002720 2.9e-17 92.8 71 77.5
TPR.G12871 Trifolium pratense HOM05D005411 ORTHO05D006463 2.9e-17 92.8 118 47.5
Ca_17530_v3 Cicer arietinum L. HOM05D005411 ORTHO05D006463 4.9e-17 92.0 138 44.9
FAN13G2772 Fragaria x ananassa HOM05D005411 ORTHO05D006463 4.9e-17 92.0 108 53.7
SGA_v2.0_scaffold173G39183 Striga asiatica HOM05D005411 ORTHO05D006463 4.9e-17 92.0 129 45.7
FAN18G0348 Fragaria x ananassa HOM05D005411 ORTHO05D006463 2.4e-16 89.7 99 55.6
Lj8E221T1 Lonicera japonica HOM05D005411 ORTHO05D006463 2.4e-16 89.7 113 48.7
Rhsim07G0090400 Rhododendron simsii HOM05D005411 ORTHO05D006463 2.4e-16 89.7 130 47.7
FAN08G0497 Fragaria x ananassa HOM05D005411 ORTHO05D006463 7.1e-16 88.2 131 47.3
Duzib205G1808 Durio zibethinus HOM05D005411 ORTHO05D006463 9.2e-16 87.8 105 52.4
TAR374G0701 Trochodendron aralioides HOM05D005411 ORTHO05D006463 9.2e-16 87.8 131 46.6
Os07g0483400 Oryza sativa ssp. japonica HOM05D005411 ORTHO05D006463 1.2e-15 87.4 121 43.8
Lj4g0004308 Lotus japonicus HOM05D005411 ORTHO05D006463 2.7e-15 86.3 152 38.8
MELO3C016353.2 Cucumis melo HOM05D005411 ORTHO05D006463 3.5e-15 85.9 123 47.2
Aqoxy7G00317 Aquilegia oxysepala HOM05D005411 ORTHO05D006463 4.6e-15 85.5 106 49.1
Sabra01G0078400 Salix brachista HOM05D005411 ORTHO05D006463 6.0e-15 85.1 110 49.1
Thecc.03G279100 Theobroma cacao HOM05D005411 ORTHO05D006463 1.0e-14 84.3 119 47.1
arahy.Tifrunner.gnm1.ann1.FJ1DNZ Arachis hypogaea HOM05D005411 ORTHO05D006463 3.0e-14 82.8 118 44.9
arahy.Tifrunner.gnm1.ann1.P2DUDW Arachis hypogaea HOM05D005411 ORTHO05D006463 3.0e-14 82.8 118 44.9
Hund16039 Selenicereus undatus HOM05D005411 ORTHO05D006463 4.3e-13 79.0 100 45.0
VMungo0251G3187 Vigna mungo HOM05D005411 ORTHO05D006463 5.6e-13 78.6 102 47.1
SEGI_09083 Sequoiadendron giganteum HOM05D005411 ORTHO05D006463 7.3e-13 78.2 118 44.9
CDE11G0686 Ceratophyllum demersum HOM05D003133 ORTHO05D006463 9.6e-13 77.8 121 43.8
AUR62022799 Chenopodium quinoa HOM05D005411 ORTHO05D006463 9.6e-13 77.8 100 44.0
Glyma.05G208200 Glycine max HOM05D005411 ORTHO05D006463 1.2e-12 77.4 103 45.6
Zm00001eb104990 Zea mays HOM05D005411 ORTHO05D006463 2.6e-10 69.7 96 41.7
Gohir.D03G151300 Gossypium hirsutum HOM05D005411 ORTHO05D006463 3.4e-10 69.3 121 41.3
BcaB04g19162 Brassica carinata HOM05D005411 ORTHO05D006463 7.6e-10 68.2 48 79.2
AUR62012163 Chenopodium quinoa HOM05D005411 ORTHO05D006463 7.6e-10 68.2 126 35.7
Pp3c11_2200 Physcomitrium patens HOM05D005411 ORTHO05D006463 1.3e-09 67.4 132 37.9
BcaC01g04135 Brassica carinata HOM05D005411 ORTHO05D006463 2.9e-09 66.2 67 56.7
CDE09G0994 Ceratophyllum demersum HOM05D005411 ORTHO05D006463 3.2e-08 62.8 85 48.2
Hma1.2p1_0377F.1_g139290 Hydrangea macrophylla HOM05D005411 ORTHO05D006463 3.2e-08 62.8 64 59.4
Mapoly0008s0209 Marchantia polymorpha HOM05D005411 ORTHO05D006463 3.2e-08 62.8 131 35.1
C03p44770 Brassica napus HOM05D005411 ORTHO05D006463 9.3e-08 61.2 79 48.1
BolC3t16740H Brassica oleracea HOM05D005411 ORTHO05D006463 9.3e-08 61.2 79 48.1
Duzib084G0828 Durio zibethinus HOM05D005411 ORTHO05D006463 2.1e-07 60.1 81 46.9
EL10Ac2g04672 Beta vulgaris HOM05D005411 ORTHO05D006463 3.5e-07 59.3 88 39.8
Atru.chr9.2185 Acer truncatum HOM05D005411 ORTHO05D006463 1.3e-06 57.4 71 53.5
CSS0044618 Camellia sinensis var. sinensis HOM05D005411 ORTHO05D006463 1.3e-06 57.4 61 57.4
Sc01g0009600 Simmondsia chinensis HOM05D005411 ORTHO05D006463 1.3e-06 57.4 109 37.6
AagrBONN_evm.TU.Sc2ySwM_369.479 Anthoceros agrestis HOM05D005411 ORTHO05D006463 2.3e-06 56.6 95 38.9
Potri.003G127900 Populus trichocarpa HOM05D005411 ORTHO05D006463 3.9e-06 55.8 77 51.9
AL1G14860 Arabidopsis lyrata HOM05D005385 ORTHO05D006768 8.7e-06 54.7 60 61.7
AL8G12210 Arabidopsis lyrata HOM05D005411 ORTHO05D006463 8.7e-06 54.7 70 58.6


User provided reference genes

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