Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung00891 Brassica carinata HOM05D004921 ORTHO05D006008 2.2e-45 185.3 94 100.0
C01p00710 Brassica napus HOM05D004921 ORTHO05D006008 9.3e-44 179.9 93 98.9
BolC1t00074H Brassica oleracea HOM05D004921 ORTHO05D006008 1.1e-41 172.9 93 97.8
Sp7g36200 Schrenkiella parvula HOM05D004921 ORTHO05D006008 2.2e-37 158.7 90 90.0
Thhalv10024641m.g Eutrema salsugineum HOM05D004921 ORTHO05D006008 3.8e-37 157.9 90 86.7
Aa31LG6G15580 Aethionema arabicum HOM05D004921 ORTHO05D006008 4.9e-37 157.5 90 88.9
AT4G39690 Arabidopsis thaliana HOM05D004921 ORTHO05D006008 4.6e-35 151.0 90 84.4
THA.LOC104807708 Tarenaya hassleriana HOM05D004921 ORTHO05D006008 6.0e-35 150.6 90 83.3
BcaC01g00311 Brassica carinata HOM05D004921 ORTHO05D006008 3.9e-34 147.9 90 83.3
A08p23440 Brassica napus HOM05D004921 ORTHO05D006008 3.9e-34 147.9 90 83.3
C03p78130 Brassica napus HOM05D004921 ORTHO05D006008 3.9e-34 147.9 90 83.3
BraA08t34298Z Brassica rapa HOM05D004921 ORTHO05D006008 3.9e-34 147.9 90 83.3
Carub.0007s0157 Capsella rubella HOM05D004921 ORTHO05D006008 1.1e-33 146.4 90 81.1
CARHR247030 Cardamine hirsuta HOM05D004921 ORTHO05D006008 1.1e-33 146.4 90 83.3
AL7G11890 Arabidopsis lyrata HOM05D004921 ORTHO05D006008 1.9e-33 145.6 90 83.3
BolC3t20076H Brassica oleracea HOM05D004921 ORTHO05D006008 3.3e-33 144.8 90 82.2
BcaB03g12266 Brassica carinata HOM05D004921 ORTHO05D006008 5.6e-33 144.1 90 82.2
Thecc.01G107800 Theobroma cacao HOM05D004921 ORTHO05D006008 1.3e-32 142.9 90 81.1
COL.COLO4_11048 Corchorus olitorius HOM05D004921 ORTHO05D006008 2.8e-32 141.7 90 80.0
Gohir.D11G225200 Gossypium hirsutum HOM05D004921 ORTHO05D006008 4.8e-32 141.0 90 81.1
Gorai.007G242500 Gossypium raimondii HOM05D004921 ORTHO05D006008 4.8e-32 141.0 90 81.1
BraA01t00066Z Brassica rapa HOM05D004921 ORTHO05D006008 6.2e-32 140.6 89 83.1
A01p00580 Brassica napus HOM05D004921 ORTHO05D006008 8.1e-32 140.2 87 85.1
Dinv21950 Davidia involucrata HOM05D004921 ORTHO05D006008 2.4e-31 138.7 90 78.9
Gohir.A11G198900 Gossypium hirsutum HOM05D004921 ORTHO05D006008 3.1e-31 138.3 90 80.0
Gohir.D12G094600 Gossypium hirsutum HOM05D004921 ORTHO05D006008 9.0e-31 136.7 90 78.9
Gorai.008G103200 Gossypium raimondii HOM05D004921 ORTHO05D006008 1.5e-30 136.0 90 78.9
PGR004G1500 Punica granatum HOM05D004921 ORTHO05D006008 1.5e-30 136.0 90 78.9
Ciclev10025222m.g Citrus clementina HOM05D004921 ORTHO05D006008 2.6e-30 135.2 90 76.7
Hma1.2p1_0070F.1_g037680 Hydrangea macrophylla HOM05D004921 ORTHO05D006008 2.6e-30 135.2 90 76.7
Gohir.A12G091122 Gossypium hirsutum HOM05D004921 ORTHO05D006008 3.4e-30 134.8 90 77.8
TAR381G0204 Trochodendron aralioides HOM05D004921 ORTHO05D006008 3.4e-30 134.8 90 77.8
CANSAT01G2911 Cannabis sativa HOM05D004921 ORTHO05D006008 4.5e-30 134.4 90 75.6
Atru.chr4.263 Acer truncatum HOM05D004921 ORTHO05D006008 9.9e-30 133.3 90 73.3
TAR381G1578 Trochodendron aralioides HOM05D004921 ORTHO05D006008 9.9e-30 133.3 90 76.7
Prupe.6G178900 Prunus persica HOM05D004921 ORTHO05D006008 1.3e-29 132.9 90 76.7
RcHm_v2.0_Chr2g0115541 Rosa chinensis HOM05D004921 ORTHO05D006008 1.3e-29 132.9 90 76.7
Duzib147G0642 Durio zibethinus HOM05D004921 ORTHO05D006008 1.7e-29 132.5 90 76.7
Actinidia36610 Actinidia chinensis HOM05D004921 ORTHO05D006008 3.8e-29 131.3 90 76.7
QL06p050536 Quercus lobata HOM05D004921 ORTHO05D006008 3.8e-29 131.3 90 74.4
Eucgr.I00377 Eucalyptus grandis HOM05D004921 ORTHO05D006008 4.9e-29 131.0 90 75.6
TWI53G0980 Tripterygium wilfordii HOM05D004921 ORTHO05D006008 4.9e-29 131.0 88 73.9
MD01G1023900 Malus domestica HOM05D004921 ORTHO05D006008 6.4e-29 130.6 90 73.3
Duzib187G0704 Durio zibethinus HOM05D004921 ORTHO05D006008 8.4e-29 130.2 90 75.6
CiPaw.03G138100 Carya illinoinensis HOM05D004921 ORTHO05D006008 1.9e-28 129.0 90 72.2
MBI05_g00773_MAGBIO Magnolia biondii HOM05D004921 ORTHO05D006008 1.9e-28 129.0 92 73.9
MBI05_g36740_MAGBIO Magnolia biondii HOM05D004921 ORTHO05D006008 1.9e-28 129.0 92 73.9
BcaNung05547 Brassica carinata HOM05D004921 ORTHO05D006008 3.2e-28 128.3 78 88.5
ECA246G4277 Erigeron canadensis HOM05D004921 ORTHO05D006008 4.2e-28 127.9 90 71.1
FvH4_1g21670 Fragaria vesca HOM05D004921 ORTHO05D006008 4.2e-28 127.9 90 71.1
Nn5g28998 Nelumbo nucifera HOM05D004921 ORTHO05D006008 4.2e-28 127.9 90 71.1
GSVIVG01022188001 Vitis vinifera HOM05D004921 ORTHO05D006008 4.2e-28 127.9 90 74.4
MSTRG.2547 Avicennia marina HOM05D004921 ORTHO05D006008 5.5e-28 127.5 90 70.0
HanXRQChr02g0041141 Helianthus annuus HOM05D004921 ORTHO05D006008 5.5e-28 127.5 90 68.9
Manes.12G138700 Manihot esculenta HOM05D004921 ORTHO05D006008 7.1e-28 127.1 90 71.1
Sc03g0002320 Simmondsia chinensis HOM05D004921 ORTHO05D006008 7.1e-28 127.1 90 68.9
Migut.H02393 Erythranthe guttata HOM05D004921 ORTHO05D006008 9.3e-28 126.7 90 70.0
Haze_24997 Corylus avellana HOM05D004921 ORTHO05D006008 1.2e-27 126.3 100 68.0
Potri.005G080200 Populus trichocarpa HOM05D004921 ORTHO05D006008 1.6e-27 125.9 90 70.0
Lj4A880G51 Lonicera japonica HOM05D004921 ORTHO05D006008 2.7e-27 125.2 92 73.9
Lsat_1_v5_gn_5_40701 Lactuca sativa HOM05D004921 ORTHO05D006008 3.5e-27 124.8 90 67.8
Glyma.05G181700 Glycine max HOM05D004921 ORTHO05D006008 6.0e-27 124.0 89 70.8
Sopen04g024290 Solanum pennellii HOM05D004921 ORTHO05D006008 6.0e-27 124.0 90 71.1
PSO133G0077 Papaver somniferum HOM05D004921 ORTHO05D006008 7.9e-27 123.6 90 66.7
PSO541G2636 Papaver somniferum HOM05D004921 ORTHO05D006008 7.9e-27 123.6 90 66.7
MSTRG.23325 Avicennia marina HOM05D004921 ORTHO05D006008 1.3e-26 122.9 90 67.8
Rhsim10G0156300 Rhododendron simsii HOM05D004921 ORTHO05D006008 2.3e-26 122.1 95 67.4
Potri.007G087100 Populus trichocarpa HOM05D004921 ORTHO05D006008 5.1e-26 120.9 90 66.7
TPR.G2186 Trifolium pratense HOM05D004921 ORTHO05D006008 5.1e-26 120.9 89 67.4
Lalb_Chr07g0184941 Lupinus albus HOM05D004921 ORTHO05D006008 6.7e-26 120.6 90 70.0
Psat7g053360 Pisum sativum HOM05D004921 ORTHO05D006008 6.7e-26 120.6 89 68.5
VMungo0251G2130 Vigna mungo HOM05D004921 ORTHO05D006008 6.7e-26 120.6 89 70.8
Glyma.08G139400 Glycine max HOM05D004921 ORTHO05D006008 8.7e-26 120.2 89 68.5
Aqoxy6G00539 Aquilegia oxysepala HOM05D004921 ORTHO05D006008 1.1e-25 119.8 90 70.0
FAN19G2080 Fragaria x ananassa HOM05D004921 ORTHO05D006008 1.1e-25 119.8 100 64.0
FAN26G3332 Fragaria x ananassa HOM05D004921 ORTHO05D006008 1.1e-25 119.8 100 64.0
FAN26G3387 Fragaria x ananassa HOM05D004921 ORTHO05D006008 1.1e-25 119.8 100 64.0
Lalb_Chr13g0296081 Lupinus albus HOM05D004921 ORTHO05D006008 1.5e-25 119.4 90 66.7
FAN28G0310 Fragaria x ananassa HOM05D004921 ORTHO05D006008 1.9e-25 119.0 100 64.0
Phvul.002G262700 Phaseolus vulgaris HOM05D004921 ORTHO05D006008 7.4e-25 117.1 89 68.5
Lj4g0017071 Lotus japonicus HOM05D004921 ORTHO05D006008 1.3e-24 116.3 89 68.5
AUR62003756 Chenopodium quinoa HOM05D004921 ORTHO05D006008 2.1e-24 115.5 90 62.2
arahy.Tifrunner.gnm1.ann1.WRB6NJ Arachis hypogaea HOM05D004921 ORTHO05D006008 2.8e-24 115.2 93 67.7
arahy.Tifrunner.gnm1.ann1.P05418 Arachis hypogaea HOM05D004921 ORTHO05D006008 3.7e-24 114.8 97 66.0
FAN23G2445 Fragaria x ananassa HOM05D004921 ORTHO05D006008 4.8e-24 114.4 116 55.2
Medtr8g091480 Medicago truncatula HOM05D004921 ORTHO05D006008 6.2e-24 114.0 89 66.3
CDE06G0766 Ceratophyllum demersum HOM05D004921 ORTHO05D006008 8.2e-24 113.6 90 65.6
AUR62002041 Chenopodium quinoa HOM05D004921 ORTHO05D006008 1.1e-23 113.2 90 61.1
Nitab4.5_0001095g0090 Nicotiana tabacum HOM05D004921 ORTHO05D006008 1.1e-23 113.2 90 67.8
CDE04G0927 Ceratophyllum demersum HOM05D004921 ORTHO05D006008 3.1e-23 111.7 92 65.2
MELO3C007782.2 Cucumis melo HOM05D004921 ORTHO05D006008 3.1e-23 111.7 90 62.2
SGA_v2.0_scaffold51G18730 Striga asiatica HOM05D004921 ORTHO05D006008 3.1e-23 111.7 95 62.1
Sed0006076 Sechium edule HOM05D004921 ORTHO05D006008 1.5e-22 109.4 90 62.2
Sabra05G0065800 Salix brachista HOM05D004921 ORTHO05D006008 2.6e-22 108.6 121 51.2
CsaV3_6G045720 Cucumis sativus L. HOM05D004921 ORTHO05D006008 3.4e-22 108.2 90 61.1
ClCG01G019030 Citrullus lanatus HOM05D004921 ORTHO05D006008 1.3e-21 106.3 92 58.7
Peaxi162Scf00204g00620 Petunia axillaris HOM05D004921 ORTHO05D006008 1.7e-21 105.9 92 60.9
HPP92_016473 Vanilla planifolia HOM05D004921 ORTHO05D006008 2.2e-21 105.5 90 62.2
ATR0661G561 Amborella trichopoda HOM05D004921 ORTHO05D006008 6.5e-21 104.0 88 62.5
DCAR_001020 Daucus carota HOM05D004921 ORTHO05D006008 8.4e-21 103.6 94 59.6
vmacro12934 Vaccinium macrocarpon HOM05D004921 ORTHO05D006008 1.1e-20 103.2 80 66.2
HPP92_027138 Vanilla planifolia HOM05D004921 ORTHO05D006008 1.1e-20 103.2 90 61.1
Dinv16320 Davidia involucrata HOM05D004921 ORTHO05D006008 3.2e-20 101.7 69 75.4
Zm00001eb431730 Zea mays HOM05D004921 ORTHO05D006008 9.3e-20 100.1 90 54.4
Ah.03g142660 Amaranthus hybridus HOM05D004921 ORTHO05D006008 2.7e-19 98.6 90 57.8
EL10Ac6g15063 Beta vulgaris HOM05D004921 ORTHO05D006008 3.9e-18 94.7 90 55.6
Cpa.g.sc82.56 Carica papaya HOM05D004921 ORTHO05D006008 8.7e-18 93.6 70 71.4
Cc07_g15680 Coffea canephora HOM05D004921 ORTHO05D006008 4.3e-17 91.3 65 70.8
Hund13647 Selenicereus undatus HOM05D004921 ORTHO05D006008 7.4e-17 90.5 90 53.3
SEGI_07937 Sequoiadendron giganteum HOM05D004921 ORTHO05D006008 1.6e-16 89.4 88 50.0
Sabra07G0072000 Salix brachista HOM05D004921 ORTHO05D006008 1.4e-15 86.3 110 46.4
MD15G1329400 Malus domestica HOM05D004921 ORTHO05D006008 4.1e-15 84.7 90 52.2
Mapoly0001s0396 Marchantia polymorpha HOM05D004921 ORTHO05D006008 4.5e-14 81.3 90 46.7
unitig_0.g2479 Utricularia gibba HOM05D004921 ORTHO05D006008 9.4e-12 73.6 92 46.7
AagrBONN_evm.TU.Sc2ySwM_344.1023 Anthoceros agrestis HOM05D004921 ORTHO05D006008 3.9e-10 68.2 90 41.1
Pp3c3_27510 Physcomitrium patens HOM05D004921 ORTHO05D006008 3.9e-10 68.2 90 37.8
SMO174G0199 Selaginella moellendorffii HOM05D004921 ORTHO05D006008 1.1e-09 66.6 90 38.9
SEGI_00052 Sequoiadendron giganteum HOM05D004921 ORTHO05D006008 1.8e-07 59.3 59 47.5
Cpa.g.sc82.58 Carica papaya HOM05D004921 ORTHO05D006008 2.4e-07 58.9 30 96.7
SMO197G0017 Selaginella moellendorffii HOM05D004921 ORTHO05D006008 9.1e-07 57.0 91 37.4


User provided reference genes

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