Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung00854 Brassica carinata HOM05D007380 ORTHO05D009269 1.2e-49 199.5 99 100.0
BcaNung00855 Brassica carinata HOM05D007380 ORTHO05D009269 1.9e-47 192.2 99 97.0
BolC7t45622H Brassica oleracea HOM05D007380 ORTHO05D009269 1.9e-47 192.2 99 97.0
C07p51220 Brassica napus HOM05D007380 ORTHO05D009269 7.2e-47 190.3 99 96.0
A03p52790 Brassica napus HOM05D007380 ORTHO05D009269 7.5e-44 180.3 99 91.9
BcaC06g30665 Brassica carinata HOM05D007380 ORTHO05D009269 2.8e-43 178.3 99 92.9
BraA03t14356Z Brassica rapa HOM05D007380 ORTHO05D009269 1.8e-42 175.6 99 89.9
Sp7g19570 Schrenkiella parvula HOM05D007380 ORTHO05D009269 1.3e-35 152.9 99 81.8
BcaNung02797 Brassica carinata HOM05D007380 ORTHO05D009269 1.7e-35 152.5 99 77.8
BcaC09g51221 Brassica carinata HOM05D007380 ORTHO05D009269 2.9e-32 141.7 101 74.3
C01p15370 Brassica napus HOM05D007380 ORTHO05D009269 5.0e-32 141.0 101 74.3
A01p12760 Brassica napus HOM05D007380 ORTHO05D009269 1.1e-31 139.8 103 71.8
BolC1t01491H Brassica oleracea HOM05D007380 ORTHO05D009269 1.1e-31 139.8 101 73.3
BraA01t01220Z Brassica rapa HOM05D007380 ORTHO05D009269 1.1e-31 139.8 103 71.8
Thhalv10026468m.g Eutrema salsugineum HOM05D007380 ORTHO05D009269 1.5e-31 139.4 103 73.8
AT4G21445 Arabidopsis thaliana HOM05D007380 ORTHO05D009269 9.5e-31 136.7 102 74.5
Carub.0007s1978 Capsella rubella HOM05D007380 ORTHO05D009269 2.8e-30 135.2 99 73.7
CARHR228120 Cardamine hirsuta HOM05D007380 ORTHO05D009269 8.9e-29 130.2 101 69.3
AL7G32620 Arabidopsis lyrata HOM05D007380 ORTHO05D009269 2.0e-17 92.4 55 85.5
Aa31LG6G3460 Aethionema arabicum HOM05D007380 ORTHO05D009269 3.5e-17 91.7 98 53.1
THA.LOC104812675 Tarenaya hassleriana HOM05D007380 ORTHO05D009269 1.4e-13 79.7 98 45.9
Rhsim02G0119200 Rhododendron simsii HOM05D007380 ORTHO05D009269 4.9e-11 71.2 55 69.1
Gohir.A06G123100 Gossypium hirsutum HOM05D007380 ORTHO05D009269 6.4e-11 70.9 87 43.7
PGR042G0893 Punica granatum HOM05D007380 ORTHO05D009269 1.4e-10 69.7 89 42.7
Gorai.010G149500 Gossypium raimondii HOM05D007380 ORTHO05D009269 2.4e-10 68.9 49 61.2
Haze_06587 Corylus avellana HOM05D007380 ORTHO05D009269 3.2e-10 68.6 56 62.5
MBI18_g27684_MAGBIO Magnolia biondii HOM05D007380 ORTHO05D009269 7.1e-10 67.4 101 41.6
Sabra04G0019200 Salix brachista HOM05D007380 ORTHO05D009269 9.2e-10 67.0 57 61.4
Duzib235G0816 Durio zibethinus HOM05D007380 ORTHO05D009269 1.2e-09 66.6 49 61.2
Gohir.D06G127800 Gossypium hirsutum HOM05D007380 ORTHO05D009269 1.2e-09 66.6 49 59.2
Manes.16G019900 Manihot esculenta HOM05D007380 ORTHO05D009269 1.2e-09 66.6 59 59.3
Potri.004G033400 Populus trichocarpa HOM05D007380 ORTHO05D009269 3.5e-09 65.1 57 59.6
Thecc.06G201000 Theobroma cacao HOM05D007380 ORTHO05D009269 3.5e-09 65.1 51 58.8
Cfa000344 Carpinus fangiana HOM05D007380 ORTHO05D009269 4.6e-09 64.7 52 57.7
PSO210G2614 Papaver somniferum HOM05D007380 ORTHO05D009269 6.0e-09 64.3 84 44.0
Atru.chr10.2021 Acer truncatum HOM05D007380 ORTHO05D009269 7.8e-09 63.9 48 62.5
FAN21G2116 Fragaria x ananassa HOM05D007380 ORTHO05D009269 7.8e-09 63.9 73 43.8
Potri.011G041800 Populus trichocarpa HOM05D007380 ORTHO05D009269 7.8e-09 63.9 48 64.6
QL05p081084 Quercus lobata HOM05D007380 ORTHO05D009269 7.8e-09 63.9 56 58.9
AUR62012486 Chenopodium quinoa HOM05D007380 ORTHO05D009269 1.3e-08 63.2 44 65.9
AUR62014709 Chenopodium quinoa HOM05D007380 ORTHO05D009269 1.3e-08 63.2 64 54.7
TWI63G1146 Tripterygium wilfordii HOM05D007380 ORTHO05D009269 1.7e-08 62.8 43 65.1
CSS0018060 Camellia sinensis var. sinensis HOM05D007380 ORTHO05D009269 2.3e-08 62.4 48 62.5
FvH4_3g03870 Fragaria vesca HOM05D007380 ORTHO05D009269 3.0e-08 62.0 73 42.5
Ciclev10017095m.g Citrus clementina HOM05D007380 ORTHO05D009269 3.9e-08 61.6 92 40.2
Cc00_g03040 Coffea canephora HOM05D007380 ORTHO05D009269 3.9e-08 61.6 77 49.4
TAR626G0266 Trochodendron aralioides HOM05D007380 ORTHO05D009269 3.9e-08 61.6 56 57.1
ECA236G0685 Erigeron canadensis HOM05D007380 ORTHO05D009269 6.6e-08 60.8 97 37.1
FvH4_3g03820 Fragaria vesca HOM05D007380 ORTHO05D009269 8.6e-08 60.5 56 51.8
Ah.14g088860 Amaranthus hybridus HOM05D007380 ORTHO05D009269 1.1e-07 60.1 50 52.0
EL10Ac8g20541 Beta vulgaris HOM05D007380 ORTHO05D009269 1.1e-07 60.1 50 56.0
CiPaw.10G117700 Carya illinoinensis HOM05D007380 ORTHO05D009269 1.1e-07 60.1 56 53.6
MD05G1326300 Malus domestica HOM05D007380 ORTHO05D009269 1.5e-07 59.7 62 53.2
RcHm_v2.0_Chr5g0006121 Rosa chinensis HOM05D007380 ORTHO05D009269 1.5e-07 59.7 47 53.2
TWI38G1816 Tripterygium wilfordii HOM05D007380 ORTHO05D009269 1.5e-07 59.7 77 41.6
Lalb_Chr15g0090121 Lupinus albus HOM05D007380 ORTHO05D009269 1.9e-07 59.3 40 62.5
GSVIVG01003660001 Vitis vinifera HOM05D007380 ORTHO05D009269 1.9e-07 59.3 56 55.4
Lj6g0018389 Lotus japonicus HOM05D007380 ORTHO05D009269 2.5e-07 58.9 39 64.1
PGSC0003DMG400011277 Solanum tuberosum HOM05D007380 ORTHO05D009269 2.5e-07 58.9 57 52.6
ATR0693G221 Amborella trichopoda HOM05D007380 ORTHO05D009269 3.3e-07 58.5 56 55.4
Glyma.15G067000 Glycine max HOM05D007380 ORTHO05D009269 3.3e-07 58.5 45 62.2
Hma1.2p1_1182F.1_g264770 Hydrangea macrophylla HOM05D007380 ORTHO05D009269 3.3e-07 58.5 84 39.3
TPR.G36752 Trifolium pratense HOM05D007380 ORTHO05D009269 3.3e-07 58.5 57 54.4
Prupe.4G035400 Prunus persica HOM05D007380 ORTHO05D009269 4.3e-07 58.2 56 51.8
Lsat_1_v5_gn_9_39840 Lactuca sativa HOM05D007380 ORTHO05D009269 5.6e-07 57.8 55 54.5
Peaxi162Scf00371g00913 Petunia axillaris HOM05D007380 ORTHO05D009269 5.6e-07 57.8 57 52.6
Psat1g208920 Pisum sativum HOM05D007380 ORTHO05D009269 5.6e-07 57.8 39 64.1
arahy.Tifrunner.gnm1.ann1.5E52J9 Arachis hypogaea HOM05D007380 ORTHO05D009269 7.3e-07 57.4 45 51.1
ClCG00G003830 Citrullus lanatus HOM05D007380 ORTHO05D009269 7.3e-07 57.4 41 58.5
ClCG01G022490 Citrullus lanatus HOM05D007380 ORTHO05D009269 7.3e-07 57.4 41 58.5
Actinidia11813 Actinidia chinensis HOM05D007380 ORTHO05D009269 9.5e-07 57.0 39 66.7
arahy.Tifrunner.gnm1.ann1.TYQ19L Arachis hypogaea HOM05D007380 ORTHO05D009269 9.5e-07 57.0 45 51.1
Medtr2g011720 Medicago truncatula HOM05D007380 ORTHO05D009269 9.5e-07 57.0 36 66.7
Actinidia24054 Actinidia chinensis HOM05D007380 ORTHO05D009269 1.2e-06 56.6 39 61.5
CDE04G1327 Ceratophyllum demersum HOM05D007380 ORTHO05D009269 1.2e-06 56.6 74 44.6
Lsat_1_v5_gn_7_20660 Lactuca sativa HOM05D007380 ORTHO05D009269 1.2e-06 56.6 55 52.7
VMungo0331G1388 Vigna mungo HOM05D007380 ORTHO05D009269 1.2e-06 56.6 86 43.0
Oeu027967.1 Olea europaea HOM05D007380 ORTHO05D009269 1.6e-06 56.2 56 55.4
Sopen10g001450 Solanum pennellii HOM05D007380 ORTHO05D009269 1.6e-06 56.2 35 68.6
Nitab4.5_0002222g0060 Nicotiana tabacum HOM05D007380 ORTHO05D009269 2.1e-06 55.8 32 75.0
Solyc10g005470.3 Solanum lycopersicum HOM05D007380 ORTHO05D009269 2.1e-06 55.8 57 49.1
CsaV3_6G049660 Cucumis sativus L. HOM05D007380 ORTHO05D009269 3.6e-06 55.1 41 53.7
CANSAT54G0392 Cannabis sativa HOM05D007380 ORTHO05D009269 4.7e-06 54.7 57 47.4
HanXRQChr05g0131131 Helianthus annuus HOM05D007380 ORTHO05D009269 4.7e-06 54.7 44 54.5
unitig_26.g9377 Utricularia gibba HOM05D007380 ORTHO05D009269 4.7e-06 54.7 88 38.6
Os04g0635700 Oryza sativa ssp. japonica HOM05D007380 ORTHO05D009269 6.2e-06 54.3 32 71.9
Aqoxy1G03898 Aquilegia oxysepala HOM05D004171 ORTHO05D004983 8.1e-06 53.9 62 48.4


User provided reference genes

Program Settings