Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung00838 Brassica carinata HOM05D005932 ORTHO05D006213 1.2e-77 293.1 145 100.0
BcaNung00840 Brassica carinata HOM05D005932 ORTHO05D006213 1.2e-77 293.1 145 100.0
BolC7t45634H Brassica oleracea HOM05D005932 ORTHO05D006213 2.6e-77 292.0 145 99.3
BraA03t14366Z Brassica rapa HOM05D005932 ORTHO05D006213 1.2e-71 273.1 145 94.5
A03p52900 Brassica napus HOM05D005932 ORTHO05D006213 2.4e-67 258.8 146 91.8
BcaC06g30675 Brassica carinata HOM05D005932 ORTHO05D006213 1.4e-62 243.0 143 86.0
C07p51350 Brassica napus HOM05D005932 ORTHO05D006213 1.4e-62 243.0 133 91.0
Sp7g19900 Schrenkiella parvula HOM05D005932 ORTHO05D006213 6.2e-55 217.6 150 77.3
CARHR228470 Cardamine hirsuta HOM05D005932 ORTHO05D006213 3.0e-49 198.7 146 72.6
Thhalv10026499m.g Eutrema salsugineum HOM05D005932 ORTHO05D006213 1.6e-42 176.4 149 64.4
A01p13050 Brassica napus HOM05D005932 ORTHO05D006213 3.5e-42 175.3 147 66.7
BraA01t01247Z Brassica rapa HOM05D005932 ORTHO05D006213 3.5e-42 175.3 147 66.7
AL7G32200 Arabidopsis lyrata HOM05D005932 ORTHO05D006213 1.3e-39 166.8 149 64.4
AT4G21740 Arabidopsis thaliana HOM05D005932 ORTHO05D006213 5.8e-37 157.9 147 63.3
BcaC09g51211 Brassica carinata HOM05D005932 ORTHO05D006213 9.6e-32 140.6 147 58.5
C01p15720 Brassica napus HOM05D005932 ORTHO05D006213 9.6e-32 140.6 147 58.5
BolC1t01525H Brassica oleracea HOM05D005932 ORTHO05D006213 9.6e-32 140.6 147 58.5
AL7G31630 Arabidopsis lyrata HOM05D005932 ORTHO05D006213 2.1e-31 139.4 150 56.7
Carub.0007s1967 Capsella rubella HOM05D005932 ORTHO05D006213 3.1e-30 135.6 140 60.7
Aa31LG6G3710 Aethionema arabicum HOM05D005932 ORTHO05D006213 9.0e-30 134.0 137 56.9
BcaNung02241 Brassica carinata HOM05D006296 ORTHO05D007777 1.1e-19 100.5 56 87.5
THA.LOC104806292 Tarenaya hassleriana HOM05D001059 ORTHO05D000873 4.2e-19 98.6 115 53.0
Atru.chr10.845 Acer truncatum HOM05D005932 ORTHO05D006213 2.6e-13 79.3 104 47.1
Gohir.D10G004200 Gossypium hirsutum HOM05D005932 ORTHO05D006213 5.9e-13 78.2 129 41.1
COL.COLO4_26835 Corchorus olitorius HOM05D005932 ORTHO05D006213 1.0e-12 77.4 137 39.4
Gohir.A10G004200 Gossypium hirsutum HOM05D005932 ORTHO05D006213 1.3e-12 77.0 129 40.3
Duzib235G1239 Durio zibethinus HOM05D005932 ORTHO05D006213 1.7e-12 76.6 127 40.9
Gorai.011G004600 Gossypium raimondii HOM05D005932 ORTHO05D006213 1.7e-12 76.6 129 40.3
Rhsim02G0161400 Rhododendron simsii HOM05D005932 ORTHO05D006213 1.7e-12 76.6 116 40.5
Thecc.06G002100 Theobroma cacao HOM05D005932 ORTHO05D006213 6.5e-12 74.7 126 38.9
Manes.14G123400 Manihot esculenta HOM05D005932 ORTHO05D006213 8.5e-12 74.3 129 38.0
PGSC0003DMG400011812 Solanum tuberosum HOM05D005932 ORTHO05D006213 8.5e-12 74.3 134 35.1
MD10G1253000 Malus domestica HOM05D005932 ORTHO05D006213 1.4e-11 73.6 132 39.4
Solyc02g024010.1 Solanum lycopersicum HOM05D005932 ORTHO05D006213 1.4e-11 73.6 131 35.9
Sed0022461 Sechium edule HOM05D005932 ORTHO05D006213 5.5e-11 71.6 136 36.8
Hma1.2p1_0067F.1_g037010 Hydrangea macrophylla HOM05D005932 ORTHO05D006213 7.2e-11 71.2 111 39.6
Sopen02g006750 Solanum pennellii HOM05D005932 ORTHO05D006213 7.2e-11 71.2 126 37.3
Sed0018131 Sechium edule HOM05D005932 ORTHO05D006213 9.4e-11 70.9 113 36.3
CiPaw.09G141700 Carya illinoinensis HOM05D005932 ORTHO05D006213 1.2e-10 70.5 131 39.7
Cfa000817 Carpinus fangiana HOM05D005932 ORTHO05D006213 2.1e-10 69.7 119 38.7
TAR626G0301 Trochodendron aralioides HOM05D005932 ORTHO05D006213 2.1e-10 69.7 139 38.1
Haze_05823 Corylus avellana HOM05D005932 ORTHO05D006213 2.7e-10 69.3 119 39.5
DCAR_003852 Daucus carota HOM05D005932 ORTHO05D006213 2.7e-10 69.3 127 39.4
MSTRG.13271 Avicennia marina HOM05D005932 ORTHO05D006213 3.6e-10 68.9 111 36.0
ClCG03G006250 Citrullus lanatus HOM05D005932 ORTHO05D006213 3.6e-10 68.9 127 37.0
Glyma.05G166000 Glycine max HOM05D005932 ORTHO05D006213 3.6e-10 68.9 125 37.6
CANSAT35G0096 Cannabis sativa HOM05D005932 ORTHO05D006213 4.6e-10 68.6 140 32.9
Migut.M01897 Erythranthe guttata HOM05D005932 ORTHO05D006213 4.6e-10 68.6 131 39.7
Gohir.A03G081000 Gossypium hirsutum HOM05D005932 ORTHO05D006213 4.6e-10 68.6 119 42.9
MELO3C007074.2 Cucumis melo HOM05D005932 ORTHO05D006213 6.1e-10 68.2 127 34.6
Manes.06G068200 Manihot esculenta HOM05D005932 ORTHO05D006213 1.4e-09 67.0 123 38.2
Thhalv10009012m.g Eutrema salsugineum HOM05D012212 ORTHO05D006213 1.8e-09 66.6 138 32.6
Eucgr.D00169 Eucalyptus grandis HOM05D005932 ORTHO05D006213 3.0e-09 65.9 107 38.3
Glyma.08G124100 Glycine max HOM05D005932 ORTHO05D006213 3.0e-09 65.9 127 35.4
Sed0024512 Sechium edule HOM05D005932 ORTHO05D006213 3.0e-09 65.9 123 40.7
Eucgr.D00155 Eucalyptus grandis HOM05D005932 ORTHO05D006213 6.7e-09 64.7 116 38.8
Psat7g064920 Pisum sativum HOM05D005932 ORTHO05D006213 6.7e-09 64.7 129 35.7
SGA_v2.0_scaffold223G42865 Striga asiatica HOM05D005932 ORTHO05D006213 6.7e-09 64.7 110 40.0
VMungo0251G2717 Vigna mungo HOM05D005932 ORTHO05D006213 6.7e-09 64.7 116 37.1
CiPaw.10G109100 Carya illinoinensis HOM05D005932 ORTHO05D006213 8.8e-09 64.3 134 38.1
Medtr8g088330 Medicago truncatula HOM05D005932 ORTHO05D006213 8.8e-09 64.3 128 35.2
Peaxi162Scf00395g00004 Petunia axillaris HOM05D005932 ORTHO05D006213 8.8e-09 64.3 125 40.0
Prupe.4G090500 Prunus persica HOM05D005932 ORTHO05D006213 8.8e-09 64.3 122 39.3
Ca_17852_v3 Cicer arietinum L. HOM05D005932 ORTHO05D006213 1.1e-08 63.9 131 35.1
Manes.05G115000 Manihot esculenta HOM05D005932 ORTHO05D006213 1.1e-08 63.9 120 35.0
ClCG01G025150 Citrullus lanatus HOM05D005932 ORTHO05D006213 1.5e-08 63.5 132 34.1
Migut.H01328 Erythranthe guttata HOM05D005932 ORTHO05D006213 2.0e-08 63.2 107 43.0
Nitab4.5_0005178g0030 Nicotiana tabacum HOM05D005932 ORTHO05D006213 2.0e-08 63.2 130 37.7
MSTRG.16291 Avicennia marina HOM05D005932 ORTHO05D006213 2.5e-08 62.8 122 37.7
Duzib192G0542 Durio zibethinus HOM05D005932 ORTHO05D006213 2.5e-08 62.8 119 38.7
Gohir.D02G103800 Gossypium hirsutum HOM05D005932 ORTHO05D006213 2.5e-08 62.8 117 39.3
unitig_92.g28172 Utricularia gibba HOM05D005932 ORTHO05D006213 2.5e-08 62.8 104 40.4
CsaV3_1G037320 Cucumis sativus L. HOM05D005932 ORTHO05D006213 3.3e-08 62.4 134 33.6
PGR083G0615 Punica granatum HOM05D005932 ORTHO05D006213 3.3e-08 62.4 122 32.0
RcHm_v2.0_Chr5g0016051 Rosa chinensis HOM05D005932 ORTHO05D006213 3.3e-08 62.4 139 35.3
Sabra11G0088800 Salix brachista HOM05D005932 ORTHO05D006213 3.3e-08 62.4 149 30.9
Nn3g20198 Nelumbo nucifera HOM05D005932 ORTHO05D006213 4.3e-08 62.0 108 38.9
TWI15G0856 Tripterygium wilfordii HOM05D005932 ORTHO05D006213 4.3e-08 62.0 111 35.1
TPR.G6729 Trifolium pratense HOM05D005932 ORTHO05D006213 5.7e-08 61.6 125 36.8
THA.LOC104798624 Tarenaya hassleriana HOM05D012212 ORTHO05D006213 7.4e-08 61.2 142 33.8
Phvul.002G246500 Phaseolus vulgaris HOM05D005932 ORTHO05D006213 9.7e-08 60.8 116 34.5
Sp1g26360 Schrenkiella parvula HOM05D012212 ORTHO05D006213 9.7e-08 60.8 144 32.6
Gorai.005G117900 Gossypium raimondii HOM05D005932 ORTHO05D006213 1.3e-07 60.5 117 38.5
Lalb_Chr07g0185951 Lupinus albus HOM05D005932 ORTHO05D006213 1.3e-07 60.5 111 36.0
unitig_37.g12073 Utricularia gibba HOM05D005932 ORTHO05D006213 1.3e-07 60.5 110 37.3
VMungo0540G1966 Vigna mungo HOM05D005932 ORTHO05D006213 1.3e-07 60.5 121 30.6
AL1G44550 Arabidopsis lyrata HOM05D012212 ORTHO05D006213 1.7e-07 60.1 148 32.4
BcaB07g32663 Brassica carinata HOM05D012212 ORTHO05D006213 2.2e-07 59.7 119 37.0
BcaB07g32687 Brassica carinata HOM05D012212 ORTHO05D006213 2.2e-07 59.7 144 33.3
C05p29520 Brassica napus HOM05D012212 ORTHO05D006213 2.2e-07 59.7 144 33.3
BolC5t31682H Brassica oleracea HOM05D012212 ORTHO05D006213 2.2e-07 59.7 144 33.3
Nitab4.5_0004734g0050 Nicotiana tabacum HOM05D005932 ORTHO05D006213 2.2e-07 59.7 128 36.7
Lj4g0014090 Lotus japonicus HOM05D005932 ORTHO05D006213 2.8e-07 59.3 127 37.0
FAN21G2441 Fragaria x ananassa HOM05D005932 ORTHO05D006213 3.7e-07 58.9 111 37.8
MD05G1272900 Malus domestica HOM05D005932 ORTHO05D006213 3.7e-07 58.9 121 38.8
CSS0012768 Camellia sinensis var. sinensis HOM05D005932 ORTHO05D006213 4.8e-07 58.5 120 33.3
SGA_v2.0_scaffold1G00270 Striga asiatica HOM05D005932 ORTHO05D006213 6.3e-07 58.2 108 39.8
CsaV3_6G052360 Cucumis sativus L. HOM05D005932 ORTHO05D006213 8.2e-07 57.8 107 32.7
Dinv10792 Davidia involucrata HOM05D005932 ORTHO05D006213 1.4e-06 57.0 107 37.4
A09p35930 Brassica napus HOM05D012212 ORTHO05D006213 1.8e-06 56.6 142 32.4
Lj2P330T27 Lonicera japonica HOM05D005932 ORTHO05D006213 2.4e-06 56.2 112 35.7
Lsat_1_v5_gn_2_93200 Lactuca sativa HOM05D005932 ORTHO05D006213 4.1e-06 55.5 107 33.6
Medtr2g030220 Medicago truncatula HOM05D005932 ORTHO05D006213 4.1e-06 55.5 134 35.1
FAN11G2171 Fragaria x ananassa HOM05D005932 ORTHO05D006213 6.9e-06 54.7 115 37.4
TWI38G2281 Tripterygium wilfordii HOM05D005932 ORTHO05D006213 6.9e-06 54.7 118 37.3
FvH4_3g10110 Fragaria vesca HOM05D005932 ORTHO05D006213 9.1e-06 54.3 114 36.0


User provided reference genes

Program Settings