Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung00807 Brassica carinata HOM05D004496 ORTHO05D005513 2.8e-164 582.0 324 100.0
C07p51660 Brassica napus HOM05D004496 ORTHO05D005513 7.6e-162 573.9 324 96.0
A03p53360 Brassica napus HOM05D004496 ORTHO05D005513 2.5e-136 489.2 325 84.6
BcaNung01704 Brassica carinata HOM05D004496 ORTHO05D005513 2.0e-130 469.5 331 81.6
Sp7g20330 Schrenkiella parvula HOM05D004496 ORTHO05D005513 2.2e-124 449.5 336 77.7
A01p13560 Brassica napus HOM05D004496 ORTHO05D005513 1.2e-122 443.7 334 77.2
BcaC09g51153 Brassica carinata HOM05D004496 ORTHO05D005513 4.5e-122 441.8 336 76.8
C01p16430 Brassica napus HOM05D004496 ORTHO05D005513 4.5e-122 441.8 336 76.8
BolC1t01593H Brassica oleracea HOM05D004496 ORTHO05D005513 4.5e-122 441.8 336 76.8
BraA01t01298Z Brassica rapa HOM05D004496 ORTHO05D005513 7.7e-122 441.0 334 76.6
BcaNung03756 Brassica carinata HOM05D004496 ORTHO05D005513 5.2e-118 428.3 330 76.4
Thhalv10025698m.g Eutrema salsugineum HOM05D004496 ORTHO05D005513 2.0e-114 416.4 331 74.0
AL7G31460 Arabidopsis lyrata HOM05D004496 ORTHO05D005513 3.4e-109 399.1 338 73.7
CARHR229080 Cardamine hirsuta HOM05D004496 ORTHO05D005513 4.8e-108 395.2 339 72.6
Carub.0007s1912 Capsella rubella HOM05D004496 ORTHO05D005513 8.3e-108 394.4 344 73.3
Aa31LG6G4310 Aethionema arabicum HOM05D004496 ORTHO05D005513 9.1e-99 364.4 354 68.6
AT4G22190 Arabidopsis thaliana HOM05D004496 ORTHO05D005513 7.2e-96 354.8 340 68.2
BcaNung03755 Brassica carinata HOM05D004496 ORTHO05D005513 9.5e-80 301.2 243 76.1
THA.LOC104812981 Tarenaya hassleriana HOM05D004496 ORTHO05D005513 8.0e-79 298.1 359 59.1
THA.LOC104806318 Tarenaya hassleriana HOM05D004496 ORTHO05D005513 2.0e-77 293.5 357 58.3
Thhalv10028862m.g Eutrema salsugineum HOM05D004496 ORTHO05D005513 4.3e-72 275.8 302 54.6
THA.LOC104813445 Tarenaya hassleriana HOM05D004496 ORTHO05D005513 6.6e-65 251.9 353 55.8
Sp6g04650 Schrenkiella parvula HOM05D004496 ORTHO05D005513 3.8e-60 236.1 320 53.1
Duzib192G0344 Durio zibethinus HOM05D004496 ORTHO05D005513 2.7e-58 229.9 332 52.4
Cpa.g.sc3209.1 Carica papaya HOM05D004496 ORTHO05D005513 4.6e-58 229.2 351 52.7
BraA03t14400Z Brassica rapa HOM05D004496 ORTHO05D005513 3.0e-57 226.5 144 81.2
Ciclev10015792m.g Citrus clementina HOM05D004496 ORTHO05D005513 1.5e-56 224.2 357 45.4
Sabra11G0010200 Salix brachista HOM05D004496 ORTHO05D005513 3.3e-56 223.0 362 48.1
Sabra11G0008600 Salix brachista HOM05D004496 ORTHO05D005513 4.3e-56 222.6 362 48.1
Phvul.006G145400 Phaseolus vulgaris HOM05D004496 ORTHO05D005513 4.8e-55 219.2 280 52.9
CiPaw.09G098400 Carya illinoinensis HOM05D004496 ORTHO05D005513 1.1e-54 218.0 355 49.3
Nn1g03388 Nelumbo nucifera HOM05D004496 ORTHO05D005513 1.4e-54 217.6 330 50.9
Gohir.D05G176300 Gossypium hirsutum HOM05D004496 ORTHO05D005513 1.8e-54 217.2 353 47.9
MD10G1327300 Malus domestica HOM05D004496 ORTHO05D005513 1.8e-54 217.2 366 47.8
MSTRG.7183 Avicennia marina HOM05D004496 ORTHO05D005513 2.0e-53 213.8 352 46.3
Dinv13941 Davidia involucrata HOM05D004496 ORTHO05D005513 2.0e-53 213.8 311 51.8
Duzib235G0420 Durio zibethinus HOM05D004496 ORTHO05D005513 2.0e-53 213.8 343 51.9
Dinv20109 Davidia involucrata HOM05D004496 ORTHO05D005950 4.4e-53 212.6 295 51.2
Glyma.15G112200 Glycine max HOM05D004496 ORTHO05D005513 7.6e-53 211.8 282 55.0
Nitab4.5_0006125g0010 Nicotiana tabacum HOM05D004496 ORTHO05D005513 9.9e-53 211.5 364 44.5
Nn1g07279 Nelumbo nucifera HOM05D004496 ORTHO05D005513 1.3e-52 211.1 361 48.5
TAR624G0763 Trochodendron aralioides HOM05D001218 ORTHO05D003142 4.9e-52 209.1 319 52.4
CiPaw.10G074800 Carya illinoinensis HOM05D004496 ORTHO05D005513 8.4e-52 208.4 330 52.1
Gohir.A05G173300 Gossypium hirsutum HOM05D004496 ORTHO05D005513 8.4e-52 208.4 353 47.6
Psat1g175480 Pisum sativum HOM05D004496 ORTHO05D005513 8.4e-52 208.4 320 48.8
Thecc.06G228600 Theobroma cacao HOM05D004496 ORTHO05D005513 8.4e-52 208.4 360 47.5
TWI38G0464 Tripterygium wilfordii HOM05D004496 ORTHO05D005513 1.1e-51 208.0 345 47.0
Prupe.4G014700 Prunus persica HOM05D004496 ORTHO05D005513 5.4e-51 205.7 341 46.9
Ca_00696_v3 Cicer arietinum L. HOM05D004496 ORTHO05D005513 9.3e-51 204.9 336 48.5
Lj2P264T22 Lonicera japonica HOM05D004496 ORTHO05D005513 9.3e-51 204.9 324 47.2
Sabra11G0011700 Salix brachista HOM05D004496 ORTHO05D005513 9.3e-51 204.9 362 46.1
Lalb_Chr15g0087811 Lupinus albus HOM05D004496 ORTHO05D005513 1.2e-50 204.5 316 50.9
MSTRG.13128 Avicennia marina HOM05D004496 ORTHO05D005513 2.1e-50 203.8 353 44.5
Potri.011G015500 Populus trichocarpa HOM05D004496 ORTHO05D005513 2.1e-50 203.8 353 47.0
FAN25G1366 Fragaria x ananassa HOM05D004496 ORTHO05D005513 6.0e-50 202.2 331 45.9
CAN.G1014.49 Capsicum annuum HOM05D004496 ORTHO05D005513 1.0e-49 201.4 311 46.6
PGR042G2934 Punica granatum HOM05D004496 ORTHO05D005513 1.0e-49 201.4 330 50.0
Glyma.09G007852 Glycine max HOM05D004496 ORTHO05D005513 1.3e-49 201.1 280 53.6
PGSC0003DMG400016725 Solanum tuberosum HOM05D004496 ORTHO05D005513 8.7e-49 198.4 361 43.5
TAR627G0164 Trochodendron aralioides HOM05D004496 ORTHO05D005513 1.1e-48 198.0 330 48.8
SalBow8G1688 Salvia bowleyana HOM05D004496 ORTHO05D005513 1.9e-48 197.2 328 45.7
FvH4_3g01370 Fragaria vesca HOM05D004496 ORTHO05D005513 2.5e-48 196.8 330 46.4
Lj6g0013804 Lotus japonicus HOM05D004496 ORTHO05D005513 3.3e-48 196.4 280 53.6
Sopen02g025790 Solanum pennellii HOM05D004496 ORTHO05D005513 7.3e-48 195.3 345 44.3
TAR627G0966 Trochodendron aralioides HOM05D004496 ORTHO05D005513 2.1e-47 193.7 330 48.5
Lsat_1_v5_gn_7_14880 Lactuca sativa HOM05D004496 ORTHO05D005513 3.6e-47 193.0 323 47.4
Migut.M01368 Erythranthe guttata HOM05D004496 ORTHO05D005513 6.2e-47 192.2 331 45.0
Nitab4.5_0009517g0010 Nicotiana tabacum HOM05D004496 ORTHO05D005513 8.1e-47 191.8 369 42.8
ClCG01G021640 Citrullus lanatus HOM05D004496 ORTHO05D005513 1.1e-46 191.4 338 47.9
Solyc02g081150.1 Solanum lycopersicum HOM05D004496 ORTHO05D005513 1.4e-46 191.0 359 42.9
Lalb_Chr18g0056781 Lupinus albus HOM05D004496 ORTHO05D005513 5.3e-46 189.1 308 48.7
Rhsim13G0149900 Rhododendron simsii HOM05D004496 ORTHO05D005513 5.3e-46 189.1 334 47.0
Manes.16G002700 Manihot esculenta HOM05D004496 ORTHO05D005513 6.9e-46 188.7 334 47.6
Phvul.003G081900 Phaseolus vulgaris HOM05D004496 ORTHO05D005513 1.2e-45 188.0 322 44.1
Sed0021394 Sechium edule HOM05D004496 ORTHO05D005513 1.2e-45 188.0 301 43.9
MD05G1352700 Malus domestica HOM05D004496 ORTHO05D005513 2.0e-45 187.2 351 49.6
vmacro03662 Vaccinium macrocarpon HOM05D004496 ORTHO05D005513 5.8e-45 185.7 358 42.2
TWI38G0680 Tripterygium wilfordii HOM05D004496 ORTHO05D005513 7.6e-45 185.3 365 43.8
Medtr2g024980 Medicago truncatula HOM05D004496 ORTHO05D005513 1.3e-44 184.5 349 44.7
CANSAT56G2524 Cannabis sativa HOM05D004496 ORTHO05D005513 1.7e-44 184.1 396 44.7
Actinidia26886 Actinidia chinensis HOM05D004496 ORTHO05D005513 2.2e-44 183.7 308 49.4
RcHm_v2.0_Chr5g0001991 Rosa chinensis HOM05D004496 ORTHO05D005513 2.2e-44 183.7 340 47.6
Peaxi162Scf00708g00013 Petunia axillaris HOM05D004496 ORTHO05D005513 2.9e-44 183.3 312 46.5
Haze_06861 Corylus avellana HOM05D004496 ORTHO05D005513 4.9e-44 182.6 353 46.2
Potri.004G003900 Populus trichocarpa HOM05D004496 ORTHO05D005513 4.9e-44 182.6 366 42.1
Atru.chr10.2286 Acer truncatum HOM05D004496 ORTHO05D005513 1.1e-43 181.4 294 49.3
Aa31LG9G9910 Aethionema arabicum HOM05D004496 ORTHO05D005950 1.1e-43 181.4 235 50.2
EL10Ac8g20132 Beta vulgaris HOM05D004496 ORTHO05D005513 5.4e-43 179.1 313 46.3
Migut.H01591 Erythranthe guttata HOM05D004496 ORTHO05D005513 7.1e-43 178.7 338 44.7
CSS0046352 Camellia sinensis var. sinensis HOM05D004496 ORTHO05D005513 9.3e-43 178.3 261 47.9
Cfa000158 Carpinus fangiana HOM05D004496 ORTHO05D005513 1.2e-42 177.9 351 45.3
Hma1.2p1_0298F.1_g117440 Hydrangea macrophylla HOM05D004496 ORTHO05D005513 1.2e-42 177.9 357 46.5
Aqoxy1G03511 Aquilegia oxysepala HOM05D004496 ORTHO05D005513 1.6e-42 177.6 357 42.9
arahy.Tifrunner.gnm1.ann1.EH65IB Arachis hypogaea HOM05D004496 ORTHO05D005513 2.1e-42 177.2 337 45.4
arahy.Tifrunner.gnm1.ann1.SI7QTZ Arachis hypogaea HOM05D004496 ORTHO05D005513 4.6e-42 176.0 338 45.6
Nitab4.5_0000005g0040 Nicotiana tabacum HOM05D004496 ORTHO05D005513 6.0e-42 175.6 333 42.3
GSVIVG01004818001 Vitis vinifera HOM05D004496 ORTHO05D005513 7.9e-42 175.3 237 50.6
TWI63G1509 Tripterygium wilfordii HOM05D004496 ORTHO05D005513 1.8e-41 174.1 360 45.0
MELO3C007420.2 Cucumis melo HOM05D004496 ORTHO05D005513 6.7e-41 172.2 331 46.2
Nitab4.5_0005882g0010 Nicotiana tabacum HOM05D004496 ORTHO05D005513 6.7e-41 172.2 330 42.4
VMungo1215G0904 Vigna mungo HOM05D004496 ORTHO05D005513 1.9e-40 170.6 316 42.7
Sabra04G0002100 Salix brachista HOM05D004496 ORTHO05D005513 2.5e-40 170.2 342 41.2
Potri.006G270100 Populus trichocarpa HOM05D004496 ORTHO05D005513 5.6e-40 169.1 295 46.4
CsaV3_6G048690 Cucumis sativus L. HOM05D004496 ORTHO05D005513 9.6e-40 168.3 328 43.6
Gohir.D06G157600 Gossypium hirsutum HOM05D004496 ORTHO05D005513 3.7e-39 166.4 295 46.8
TAR626G0621 Trochodendron aralioides HOM05D004496 ORTHO05D005513 3.7e-39 166.4 328 50.6
Actinidia02342 Actinidia chinensis HOM05D004496 ORTHO05D005513 4.8e-39 166.0 305 46.9
Gorai.009G181700 Gossypium raimondii HOM05D004496 ORTHO05D005513 4.8e-39 166.0 264 50.0
Gorai.010G184200 Gossypium raimondii HOM05D004496 ORTHO05D005513 4.8e-39 166.0 295 46.8
Ah.09g234500 Amaranthus hybridus HOM05D004496 ORTHO05D005950 1.4e-38 164.5 275 50.2
Lsat_1_v5_gn_4_61701 Lactuca sativa HOM05D004496 ORTHO05D005513 3.1e-38 163.3 347 44.7
HanXRQChr15g0470781 Helianthus annuus HOM05D004496 ORTHO05D005513 5.3e-38 162.5 306 48.0
Oeu007154.1 Olea europaea HOM05D004496 ORTHO05D005513 5.3e-38 162.5 303 46.9
CDE04G1983 Ceratophyllum demersum HOM05D004496 ORTHO05D005513 9.0e-38 161.8 299 40.1
PGR004G2243 Punica granatum HOM05D004496 ORTHO05D005513 2.6e-37 160.2 323 39.0
Manes.17G027100 Manihot esculenta HOM05D004496 ORTHO05D005513 7.6e-37 158.7 282 46.8
QL05p071740 Quercus lobata HOM05D004496 ORTHO05D005513 7.6e-37 158.7 362 42.8
Sc17g0007590 Simmondsia chinensis HOM05D004496 ORTHO05D005513 8.4e-36 155.2 317 44.5
ATR0059G030 Amborella trichopoda HOM05D004496 ORTHO05D005513 3.2e-35 153.3 358 40.8
Peaxi162Scf00294g00097 Petunia axillaris HOM05D004496 ORTHO05D005513 3.2e-35 153.3 269 43.5
Sed0016463 Sechium edule HOM05D004496 ORTHO05D005513 5.5e-35 152.5 263 50.6
MBI19_g19808_MAGBIO Magnolia biondii HOM05D004496 ORTHO05D005513 1.6e-34 151.0 340 43.2
PSO210G3984 Papaver somniferum HOM05D004496 ORTHO05D005513 2.1e-34 150.6 384 37.5
Potri.006G282500 Populus trichocarpa HOM05D004496 ORTHO05D005513 2.7e-34 150.2 359 40.9
Gohir.A06G151400 Gossypium hirsutum HOM05D004496 ORTHO05D005513 6.0e-34 149.1 250 52.4
Potri.006G282000 Populus trichocarpa HOM05D004496 ORTHO05D005513 6.0e-34 149.1 358 41.1
HPP92_023384 Vanilla planifolia HOM05D004496 ORTHO05D005513 3.0e-33 146.7 328 38.7
Glyma.07G263700 Glycine max HOM05D004496 ORTHO05D005513 1.5e-32 144.4 296 39.9
ECA236G1118 Erigeron canadensis HOM05D004496 ORTHO05D005513 2.5e-32 143.7 311 39.5
PSO832G0430 Papaver somniferum HOM05D004496 ORTHO05D005513 4.3e-32 142.9 396 37.1
unitig_26.g9398 Utricularia gibba HOM05D004496 ORTHO05D005513 2.8e-31 140.2 309 37.2
COL.COLO4_31834 Corchorus olitorius HOM05D004496 ORTHO05D005513 5.3e-30 136.0 162 53.7
CDE07G1551 Ceratophyllum demersum HOM05D004496 ORTHO05D005513 8.4e-28 128.6 256 35.9
unitig_749.g13622 Utricularia gibba HOM05D004496 ORTHO05D005513 8.4e-28 128.6 269 39.8
Lj4g0028181 Lotus japonicus HOM05D004496 ORTHO05D005513 2.5e-27 127.1 280 40.4
SGA_v2.0_scaffold89G27486 Striga asiatica HOM05D004496 ORTHO05D005513 2.7e-26 123.6 370 36.8
Eucgr.D01366 Eucalyptus grandis HOM05D004496 ORTHO05D005513 2.3e-25 120.6 146 51.4
Psat4g004280 Pisum sativum HOM05D004496 ORTHO05D005513 2.3e-25 120.6 215 43.7
DCAR_002205 Daucus carota HOM05D004496 ORTHO05D005513 3.9e-25 119.8 343 33.2
Lj1P1236T60 Lonicera japonica HOM05D004496 ORTHO05D005513 1.9e-24 117.5 149 50.3
Nn1g01506 Nelumbo nucifera HOM05D004496 ORTHO05D005513 7.4e-24 115.5 134 49.3
Potri.006G283300 Populus trichocarpa HOM05D004496 ORTHO05D005513 8.2e-23 112.1 292 41.8
Medtr4g132690 Medicago truncatula HOM05D004496 ORTHO05D005513 1.8e-22 110.9 295 32.5
Zm00001eb112850 Zea mays HOM05D004496 ORTHO05D005513 1.5e-21 107.8 358 34.6
TPR.G37047 Trifolium pratense HOM05D004496 ORTHO05D005513 2.2e-20 104.0 230 41.7
Oeu003154.1 Olea europaea HOM05D004496 ORTHO05D005513 2.9e-20 103.6 293 34.1
Nn2g15240 Nelumbo nucifera HOM05D004496 ORTHO05D005513 6.5e-20 102.4 258 40.3
Ca_21060_v3 Cicer arietinum L. HOM05D004496 ORTHO05D005513 1.9e-19 100.9 247 37.2
Zm00001eb169380 Zea mays HOM05D004496 ORTHO05D005513 4.2e-19 99.8 349 38.1
Nn1g06547 Nelumbo nucifera HOM05D004496 ORTHO05D005513 1.1e-16 91.7 102 52.0
Nn3g21624 Nelumbo nucifera HOM05D004496 ORTHO05D005513 7.4e-16 89.0 268 40.7
HPP92_008063 Vanilla planifolia HOM05D004496 ORTHO05D005513 9.7e-16 88.6 143 45.5
SGA_v2.0_scaffold4G01894 Striga asiatica HOM05D004496 ORTHO05D005513 3.1e-14 83.6 346 33.5
Os11g0497350 Oryza sativa ssp. japonica HOM05D004496 ORTHO05D005513 2.6e-08 63.9 336 32.7
unitig_748.g7579 Utricularia gibba HOM05D004496 ORTHO05D005513 4.8e-07 59.7 74 54.1


User provided reference genes

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